These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2833#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [CGGGCGCAGGCTGTCTGTGCTTTGTGTCGCATGATCGTGGTCGTCCGGTGCCCGGGATGGAGCAGGAGGGCACAGCACGGGGTCGGCTTGGCCGGCCATGGTGGCTCACGGGGGTAGCGGTTCAGCCGGGGCCAGGAAGGAGAAGGAAGCGGACGCACGACTACCTGCGGACAACCCCGCGCCTTGACGAGTCCTGCCAGCAAGCAAAACACGTAGCGGGAAACTTGTGGGGAAGTAGTGGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTGGCTTTGATATCAGTAGAGATTCCATCGAGGAACCCGTCATTTTGGCATCAAA] [+] EMBL BI802178 [CGGGCGCAGGCTGTCTGTGCTTTGTGTCGCATGATCGTGGTCGTCCGGTGCCCGGGATGGAGCAGGAGGGCACAGCACGGGGTCGGCTTGGCCGGCCATGGTGGCTCACGGGGGTAGCGGTTCAGCCGGGGCCAGGAAGGAGAAGGAAGCGGACGCACGACTACCTGCGGACAACCCCGCGCCTTGACGAGTCCTGCCAGCAAGCAAAACACGTAGCGGGAAACTTGTGGGGAAGTAGTGGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTGGCTTTGATATCAGTAGAGATTCCATCGAGGAACCCGTCATTTTGGCATCAAA] consensusID : consensus_2833#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [GACTACCTGCGACAACCCCGCGGCCTTGACGATCCCTTCCAGCAATGCAAACACGTAGCGTGAAACTTGTGGGGAAGTAGTGGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTTGCTTTGATATGCAGTAGAGATTCCATCGATGAATGCCGTCATTTTTGCATCTGTGCGAGGGTCTCCAGCTATAGTTTTTCTCTGCTTCCTCTGTGTTGCTCAGGTGGTTGTCTTGCTCGAGTGAATGTGTTGCTCAGGTGTTTGTTTTGCTCAAAAAAAAAAAAAAAAAAA] [+] EMBL CB000005 [GACTACCTGCGACAACCCCGCGGCCTTGACGATCCCTTCCAGCAATGCAAACACGTAGCGTGAAACTTGTGGGGAAGTAGTGGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTTGCTTTGATATGCAGTAGAGATTCCATCGATGAATGCCGTCATTTTTGCATCTGTGCGAGGGTCTCCAGCTATAGTTTTTCTCTGCTTCCTCTGTGTTGCTCAGGTGGTTGTCTTGCTCGAGTGAATGTGTTGCTCAGGTGTTTGTTTTGCTCAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2833#0 CGGGCGCAGGCTGTCTGTGCTTTGTGTCGCATGATCGTGGTCGTCCGGTGCCCGGGATGG 60 consensus_2833#1 ------------------------------------------------------------ consensus_2833#0 AGCAGGAGGGCACAGCACGGGGTCGGCTTGGCCGGCCATGGTGGCTCACGGGGGTAGCGG 120 consensus_2833#1 ------------------------------------------------------------ consensus_2833#0 TTCAGCCGGGGCCAGGAAGGAGAAGGAAGCGGACGCACGACTACCTGCGGACAACCCCGC 180 consensus_2833#1 --------------------------------------GACTACCTGCG-ACAACCCCGC 21 *********** ********** consensus_2833#0 G-CCTTGACGAGTCCTGCCAGCAAGCAAAACACGTAGCGGGAAACTTGTGGGGAAGTAGT 239 consensus_2833#1 GGCCTTGACGATCCCTTCCAGCAATGCAAACACGTAGCGTGAAACTTGTGGGGAAGTAGT 81 * ********* *** ******* ************ ******************** consensus_2833#0 GGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTGGCTTTGATAT-CAGTAGAG 298 consensus_2833#1 GGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTTGCTTTGATATGCAGTAGAG 141 **************************************** ********** ******** consensus_2833#0 ATTCCATCGAGGAAC-CCGTCATTTTGGCATCAAA------------------------- 332 consensus_2833#1 ATTCCATCGATGAATGCCGTCATTTTTGCATCTGTGCGAGGGTCTCCAGCTATAGTTTTT 201 ********** *** ********** ***** consensus_2833#0 ------------------------------------------------------------ consensus_2833#1 CTCTGCTTCCTCTGTGTTGCTCAGGTGGTTGTCTTGCTCGAGTGAATGTGTTGCTCAGGT 261 consensus_2833#0 -------------------------------- consensus_2833#1 GTTTGTTTTGCTCAAAAAAAAAAAAAAAAAAA 293 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||