cluster # 2837

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Oryza sativa
cluster # 2837 cluster # 2837 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2837#0 length = 796 sequences # 1

consensus_2837#1 length = 417 sequences # 1

consensusID : consensus_2837#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 796
fasta sequence

                              [TCTCGCCCATCGCCGCCGCCTCCGCCGCCTCTGCCCCAGAACTGGAGTAGTTTCTGATTTGGGACTAAAAACTCTTCGTGTTTGTGTGATCGCTTGTGATTGTGGCACGGCAACCATTCTTATCATGTCCAGAAGATTAATTCCTTCTTCTTGTTGTTGGGAATAAATGGATAGATAGATTTACTTCTGAATTTGTCTCTGAAAGAGGGGGGCATATGGCTTCCTTATTTCGACGATCTTCGATCACCCACCACGCCACCTCAGCTGTGGCATCTGCAGCAGGTGCTCACCGTGCCTTCTCTCCAGCAATGGGAGGTGGCATTCGACCTGATCTTACAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAGGGCTCGTGCTGTCTGAATGCCTAAAGATTCTGCGCCGGGAGGGTGAACAGCAGAGTTGGGCTAAGCTGTGGTGCAAGCAGATTGCAGCCGTGGTGATTTTTGGGGTGCTGTTTAGGTCGGGAGAACCGGAGAAGCATGAACCAAATGCTAGTAGTTAATAATTAATTCTAAGAGGCTTATAACTAAGTTAAAAGCATGTGACTGTGGACTGTGGTGTTATGCTGACAAGCAATTTATGCTCTTTATCTTTCTTGGGAAGGGCGACATTTTGACAAGCAAAACATGATGATGCTGATTGTTTGTTTTGAGTTGGCACTTCTGAGTTCTAATTAAGATGCGTGTTGAACATGCGGCTACT]

[+] EMBL AK070929             [TCTCGCCCATCGCCGCCGCCTCCGCCGCCTCTGCCCCAGAACTGGAGTAGTTTCTGATTTGGGACTAAAAACTCTTCGTGTTTGTGTGATCGCTTGTGATTGTGGCACGGCAACCATTCTTATCATGTCCAGAAGATTAATTCCTTCTTCTTGTTGTTGGGAATAAATGGATAGATAGATTTACTTCTGAATTTGTCTCTGAAAGAGGGGGGCATATGGCTTCCTTATTTCGACGATCTTCGATCACCCACCACGCCACCTCAGCTGTGGCATCTGCAGCAGGTGCTCACCGTGCCTTCTCTCCAGCAATGGGAGGTGGCATTCGACCTGATCTTACAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAGGGCTCGTGCTGTCTGAATGCCTAAAGATTCTGCGCCGGGAGGGTGAACAGCAGAGTTGGGCTAAGCTGTGGTGCAAGCAGATTGCAGCCGTGGTGATTTTTGGGGTGCTGTTTAGGTCGGGAGAACCGGAGAAGCATGAACCAAATGCTAGTAGTTAATAATTAATTCTAAGAGGCTTATAACTAAGTTAAAAGCATGTGACTGTGGACTGTGGTGTTATGCTGACAAGCAATTTATGCTCTTTATCTTTCTTGGGAAGGGCGACATTTTGACAAGCAAAACATGATGATGCTGATTGTTTGTTTTGAGTTGGCACTTCTGAGTTCTAATTAAGATGCGTGTTGAACATGCGGCTACT]




>consensus_2837#0
TCTCGCCCATCGCCGCCGCCTCCGCCGCCTCTGCCCCAGAACTGGAGTAGTTTCTGATTT
GGGACTAAAAACTCTTCGTGTTTGTGTGATCGCTTGTGATTGTGGCACGGCAACCATTCT
TATCATGTCCAGAAGATTAATTCCTTCTTCTTGTTGTTGGGAATAAATGGATAGATAGAT
TTACTTCTGAATTTGTCTCTGAAAGAGGGGGGCATATGGCTTCCTTATTTCGACGATCTT
CGATCACCCACCACGCCACCTCAGCTGTGGCATCTGCAGCAGGTGCTCACCGTGCCTTCT
CTCCAGCAATGGGAGGTGGCATTCGACCTGATCTTACAAACACTGAGATTGACAAGCTTC
TGCTCCAGAAATCTGCATTCAACAAGGCAGGCATATTTTCAGCGAGAGGTAAGATCACGC
ATGCCAATGTTGAGAAAGGGCTCGTGCTGTCTGAATGCCTAAAGATTCTGCGCCGGGAGG
GTGAACAGCAGAGTTGGGCTAAGCTGTGGTGCAAGCAGATTGCAGCCGTGGTGATTTTTG
GGGTGCTGTTTAGGTCGGGAGAACCGGAGAAGCATGAACCAAATGCTAGTAGTTAATAAT
TAATTCTAAGAGGCTTATAACTAAGTTAAAAGCATGTGACTGTGGACTGTGGTGTTATGC
TGACAAGCAATTTATGCTCTTTATCTTTCTTGGGAAGGGCGACATTTTGACAAGCAAAAC
ATGATGATGCTGATTGTTTGTTTTGAGTTGGCACTTCTGAGTTCTAATTAAGATGCGTGT
TGAACATGCGGCTACT

consensusID : consensus_2837#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [CATTCCGGCCGACCTCCTTCCTCCTATATATTCTAGGGTTTTCTGTCCCGGCGATCCGACTGTTCTCTCGCCCATCGCCGCCGCCTCCGCCGCCTCTGCCCCAGCTCTGAAAGAGGGGGGCATATGGCTTCCTTATTTCGACGATCTTCGATCACCCACCACGCCACCTCAGCTGTGGCATCTGCAGCAGGTGCTCACCGTGCCTTCTCTCCAGCAATGGGAGGTGGCATTCGACCTGATCTTACAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAGGGCTCGTGCTGTCTGAATGCCTAAAGATTCTGCGCCGGGAGGGTGAACAGCAGAGTTGGGCTAAGCTGTGG]

[+] EMBL AU069058             [CATTCCGGCCGACCTCCTTCCTCCTATATATTCTAGGGTTTTCTGTCCCGGCGATCCGACTGTTCTCTCGCCCATCGCCGCCGCCTCCGCCGCCTCTGCCCCAGCTCTGAAAGAGGGGGGCATATGGCTTCCTTATTTCGACGATCTTCGATCACCCACCACGCCACCTCAGCTGTGGCATCTGCAGCAGGTGCTCACCGTGCCTTCTCTCCAGCAATGGGAGGTGGCATTCGACCTGATCTTACAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAGGGCTCGTGCTGTCTGAATGCCTAAAGATTCTGCGCCGGGAGGGTGAACAGCAGAGTTGGGCTAAGCTGTGG]




>consensus_2837#1
CATTCCGGCCGACCTCCTTCCTCCTATATATTCTAGGGTTTTCTGTCCCGGCGATCCGAC
TGTTCTCTCGCCCATCGCCGCCGCCTCCGCCGCCTCTGCCCCAGCTCTGAAAGAGGGGGG
CATATGGCTTCCTTATTTCGACGATCTTCGATCACCCACCACGCCACCTCAGCTGTGGCA
TCTGCAGCAGGTGCTCACCGTGCCTTCTCTCCAGCAATGGGAGGTGGCATTCGACCTGAT
CTTACAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGGCAGGC
ATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAGGGCTCGTGCTGTCT
GAATGCCTAAAGATTCTGCGCCGGGAGGGTGAACAGCAGAGTTGGGCTAAGCTGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2837#0      TCTCGCCCATCGCCGCCGCCTCCGCCGCCTCTGCCCCAGAACTGGAGTAGTTTCTGATTT 60
consensus_2837#1      ------------------------------------------------------------
                                                                                  

consensus_2837#0      GGGACTAAAAACTCTTCGTGTTTGTGTGATCGCTTGTGATTGTGGCACGGCAACCATTCT 120
consensus_2837#1      ---------------------CATTCCGGCCGACCTCCTTCCTCCTATATATTCTAGGGT 39
                                              *  *  **       *  *   *      * *   *

consensus_2837#0      TATCATGTCCAGAAGATTAATTCCTTCTTCTTGTTGTTGGGAATAAATGGATAGATAGAT 180
consensus_2837#1      TTTC-TGTCCCGGCGATCCGACTGTTCTCTCGCCCATCGCCGCCGCCTCCGCCG------ 92
                      * ** ***** *  ***       ****        * *        *     *      

consensus_2837#0      TTACTTCTGAATTTGTCTCTGAAAGAGGGGGGCATATGGCTTCCTTATTTCGACGATCTT 240
consensus_2837#1      ---CCTCTGC-CCCAGCTCTGAAAGAGGGGGGCATATGGCTTCCTTATTTCGACGATCTT 148
                         * ****       ********************************************

consensus_2837#0      CGATCACCCACCACGCCACCTCAGCTGTGGCATCTGCAGCAGGTGCTCACCGTGCCTTCT 300
consensus_2837#1      CGATCACCCACCACGCCACCTCAGCTGTGGCATCTGCAGCAGGTGCTCACCGTGCCTTCT 208
                      ************************************************************

consensus_2837#0      CTCCAGCAATGGGAGGTGGCATTCGACCTGATCTTACAAACACTGAGATTGACAAGCTTC 360
consensus_2837#1      CTCCAGCAATGGGAGGTGGCATTCGACCTGATCTTACAAACACTGAGATTGACAAGCTTC 268
                      ************************************************************

consensus_2837#0      TGCTCCAGAAATCTGCATTCAACAAGGCAGGCATATTTTCAGCGAGAGGTAAGATCACGC 420
consensus_2837#1      TGCTCCAGAAATCTGCATTCAACAAGGCAGGCATATTTTCAGCGAGAGGTAAGATCACGC 328
                      ************************************************************

consensus_2837#0      ATGCCAATGTTGAGAAAGGGCTCGTGCTGTCTGAATGCCTAAAGATTCTGCGCCGGGAGG 480
consensus_2837#1      ATGCCAATGTTGAGAAAGGGCTCGTGCTGTCTGAATGCCTAAAGATTCTGCGCCGGGAGG 388
                      ************************************************************

consensus_2837#0      GTGAACAGCAGAGTTGGGCTAAGCTGTGGTGCAAGCAGATTGCAGCCGTGGTGATTTTTG 540
consensus_2837#1      GTGAACAGCAGAGTTGGGCTAAGCTGTGG------------------------------- 417
                      *****************************                               

consensus_2837#0      GGGTGCTGTTTAGGTCGGGAGAACCGGAGAAGCATGAACCAAATGCTAGTAGTTAATAAT 600
consensus_2837#1      ------------------------------------------------------------
                                                                                  

consensus_2837#0      TAATTCTAAGAGGCTTATAACTAAGTTAAAAGCATGTGACTGTGGACTGTGGTGTTATGC 660
consensus_2837#1      ------------------------------------------------------------
                                                                                  

consensus_2837#0      TGACAAGCAATTTATGCTCTTTATCTTTCTTGGGAAGGGCGACATTTTGACAAGCAAAAC 720
consensus_2837#1      ------------------------------------------------------------
                                                                                  

consensus_2837#0      ATGATGATGCTGATTGTTTGTTTTGAGTTGGCACTTCTGAGTTCTAATTAAGATGCGTGT 780
consensus_2837#1      ------------------------------------------------------------
                                                                                  

consensus_2837#0      TGAACATGCGGCTACT 796
consensus_2837#1      ----------------