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Oryza sativa
cluster # 2841 cluster # 2841       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2841#0 length = 1085 sequences # 2  

consensusID : consensus_2841#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1085
fasta sequence
                              [GCATCTTCCCTAGCTTGCTAAGCTAGCTAGTCTTCTCCTTCCTTTCTCCTCTTCCTCCTCCTCCTCTTCTTCTCAATCTTGCTCAGCAAATCTTGTCGGGGAGAGAGAGAGAGAGATCAGCAAGGAGAAGAGGGAATTAAGCTAGATCGAGGTAGTCGTCGATCGATCGATTGAAGATGGGGAGAGGGAAGATTGCCATCAAGAGGATCGACAACACGATGAACCGGCAGGTGACCTTCTCGAAGCGGCGCGGCGGGCTGATGAAGAAGGCCCGGGAGCTGGCCATCCTCTGCGACGCCGACGTCGGCCTCATTGTCTTCTCCTGCACCGGCCGCCTCTACGACTTCTCCAGCTCAAGCATGAAATCAATAATAGAGCGGTACCAGGAGGCAGGAGAGGAGCATTGTCGGTTGCTGAACCCAATGTCAGAGGCTAAGTTTTGGCAGCGGGAGGTTACAACTTTGAGGCAGCAAGTGCAAAACTTACACCACAACAACAGGCAACTTTTGGGAGAGGAAATCTCCAACTTCACAGTTAGAGATCTGCAGCTTCTCCAGAACCAAGTTGAGATGAGCCTACATTCCATAAGAAATAAAAAGGATCAACTTTTGGCAGAGGAGATTCTAAAACTCAATGAAAAGGGGTCTCTTGTTCAAAAGGAGAACAGTGAACTTCGCAAGAAGTTCAACATTGCTCATCAACGCAACATAGAATTACACAAGAAGCTTAACTCTGGAGAAAGCACGTCAAGTGAGCAAGTTACCAGAAGCTCAAAGGATCCCGGAGAATCGAGTACACCCCGTGATTCACGTGTGTGTATTGACCTTGAATTGAGTCAAAAAGAAGTTGAAGATGAATAACACATGATCAAGTGTTAAAAACAACATGATGGCCAGTAACTTTTGCAGCATCACGCCTACTACAAGCGCAAGAAAAGCTAGCTACTACTGGAACAAGGGATCTTAATCATGTTTTGAAACTTAATTAGTAATATTTTAAAAAATCGTACTATACTAATCATGATGTGTAGCGTATTGCACCACTGAATTTATTACTGTAATTAACATGGTGAGTGTTAAAATATT]

[+] EMBL AK102927             [GCATCTTCCCTAGCTTGCTAAGCTAGCTAGTCTTCTCCTTCCTTTCTCCTCTTCCTCCTCCTCCTCTTCTTCTCAATCTTGCTCAGCAAATCTTGTCGGGGAGAGAGAGAGAGAGATCAGCAAGGAGAAGAGGGAATTAAGCTAGATCGAGGTAGTCGTCGATCGATCGATTGAAGATGGGGAGAGGGAAGATTGCCATCAAGAGGATCGACAACACGATGAACCGGCAGGTGACCTTCTCGAAGCGGCGCGGCGGGCTGATGAAGAAGGCCCGGGAGCTGGCCATCCTCTGCGACGCCGACGTCGGCCTCATTGTCTTCTCCTGCACCGGCCGCCTCTACGACTTCTCCAGCTCAAGCATGAAATCAATAATAGAGCGGTACCAGGAGGCAGGAGAGGAGCATTGTCGGTTGCTGAACCCAATGTCAGAGGCTAAGTTTTGGCAGCGGGAGGTTACAACTTTGAGGCAGCAAGTGCAAAACTTACACCACAACAACAGGCAACTTTTGGGAGAGGAAATCTCCAACTTCACAGTTAGAGATCTGCAGCTTCTCCAGAACCAAGTTGAGATGAGCCTACATTCCATAAGAAATAAAAAGGATCAACTTTTGGCAGAGGAGATTCTAAAACTCAATGAAAAGGGGTCTCTTGTTCAAAAGGAGAACAGTGAACTTCGCAAGAAGTTCAACATTGCTCATCAACGCAACATAGAATTACACAAGAAGCTTAACTCTGGAGAAAGCACGTCAAGTGAGCAAGTTACCAGAAGCTCAAAGGATCCCGGAGAATCGAGTACACCCCGTGATTCACGTGTGTGTATTGACCTTGAATTGAGTCAAAAAGAAGTTGAAGATGAATAACACATGATCAAGTGTTAAAAACAACATGATGGCCAGTAACTTTTGCAGCATCACGCCTACTACAAGCGCAAGAAAAGCTAGCTACTACTGGAACAAGGGATCTTAATCATGTTTTGAAACTTAATTAGTAATATTTTAAAAAATCGTACTATACTAATCATGATGTGTAGCGTATTGCACCACTGAATTTATTACTGTAATTAACATGGTGAGTGTTAAAATATT]
[+] EMBL AY177695             [                                                                                                                                                                      TCGATTGAAGATGGGGAGAGGGAAGATTGCCATCAAGAGGATCGACAACACGATGAACCGGCAGGTGACCTTCTCGAAGCGGCGCGGCGGGCTGATGAAGAAGGCCCGGGAGCTGGCCATCCTCTGCGACGCCGACGTCGGCCTCATTGTCTTCTCCTGCACCGGCCGCCTCTACGACTTCTCCAGCTCAAGCATGAAATCAATAATAGAGCGGTACCAGGAGGCAGGAGAGGAGCATTGTCGGTTGCTGAACCCAATGTCAGAGGCTAAGTTTTGGCAGCGGGAGGTTACAACTTTGAGGCAGCAAGTGCAAAACTTACACCACAACAACAGGCAACTTTTGGGAGAGGAAATCTCCAACTTCACAGTTAGAGATCTGCAGCTTCTCCAGAACCAAGTTGAGATGAGCCTACATTCCATAAGAAATAAAAAGGATCAACTTTTGGCAGAGGAGATTCTAAAACTCAATGAAAAGGGGTCTCTTGTTCAAAAGGAGAACAGTGAACTTCGCAAGAAGTTCAACATTGCTCATCAACGCAACATAGAATTACACAAGAAGCTTAACTCTGGAGAAAGCACGTCAAGTGAGCAAGTTACCAGAAGCTCAAAGGATCCCGGAGAATCGAGTACACCCCGTGATTCACGTGTGTGTATTGACCTTGAATTGAGTCAAAAAGAAGTTGAAGATGAATAACACATGATCAAGTGTT AAAACAACATGATGGCCAGTAACTTTTGCAGCATCACGCCTACTAC AGCGC AG AAAGCTAGCTACTACTGGAAC AGGGATC TAATCA                                                                                                                    ]


>consensus_2841#0 GCATCTTCCCTAGCTTGCTAAGCTAGCTAGTCTTCTCCTTCCTTTCTCCTCTTCCTCCTC CTCCTCTTCTTCTCAATCTTGCTCAGCAAATCTTGTCGGGGAGAGAGAGAGAGAGATCAG CAAGGAGAAGAGGGAATTAAGCTAGATCGAGGTAGTCGTCGATCGATCGATTGAAGATGG GGAGAGGGAAGATTGCCATCAAGAGGATCGACAACACGATGAACCGGCAGGTGACCTTCT CGAAGCGGCGCGGCGGGCTGATGAAGAAGGCCCGGGAGCTGGCCATCCTCTGCGACGCCG ACGTCGGCCTCATTGTCTTCTCCTGCACCGGCCGCCTCTACGACTTCTCCAGCTCAAGCA TGAAATCAATAATAGAGCGGTACCAGGAGGCAGGAGAGGAGCATTGTCGGTTGCTGAACC CAATGTCAGAGGCTAAGTTTTGGCAGCGGGAGGTTACAACTTTGAGGCAGCAAGTGCAAA ACTTACACCACAACAACAGGCAACTTTTGGGAGAGGAAATCTCCAACTTCACAGTTAGAG ATCTGCAGCTTCTCCAGAACCAAGTTGAGATGAGCCTACATTCCATAAGAAATAAAAAGG ATCAACTTTTGGCAGAGGAGATTCTAAAACTCAATGAAAAGGGGTCTCTTGTTCAAAAGG AGAACAGTGAACTTCGCAAGAAGTTCAACATTGCTCATCAACGCAACATAGAATTACACA AGAAGCTTAACTCTGGAGAAAGCACGTCAAGTGAGCAAGTTACCAGAAGCTCAAAGGATC CCGGAGAATCGAGTACACCCCGTGATTCACGTGTGTGTATTGACCTTGAATTGAGTCAAA AAGAAGTTGAAGATGAATAACACATGATCAAGTGTTAAAAACAACATGATGGCCAGTAAC TTTTGCAGCATCACGCCTACTACAAGCGCAAGAAAAGCTAGCTACTACTGGAACAAGGGA TCTTAATCATGTTTTGAAACTTAATTAGTAATATTTTAAAAAATCGTACTATACTAATCA TGATGTGTAGCGTATTGCACCACTGAATTTATTACTGTAATTAACATGGTGAGTGTTAAA ATATT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)