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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1069 fasta sequence
[CACACGTCTCCACCCTCTCTCCCCGCCGCCGTCGCGACTCGCGATCGCACGGTAAAATCGCCGCCGGTGGGCACACCGCCGCCGCGATGTCGCACGGCGACACCATCCCGCTCCACTCCTCGTCCGCGCAGTCGGACATGGACGAGATCGAGAGCCTCATCCACGCGGCGCCGCCCTCCGCGGCCGCGGTGCTCCCCGCGCGGCCGCCGTCGCCTCCGCGGGCCTCGATCCCCGTCTCCAGCTCGCCCCCCCTGCTGCCTCCTCCGGTGGCCGGGTCCAAGCCGCAGCTCCCCCCGTTCTCCTCCTCCTCCTCCGTGGCGTCGTCGTCGTCTCCGCCGCTCCCCTCCTCCGTCTCGGTCGCCATCGCCGGCGACGGGTTCGGCCCCCCGCCCAACACGCTCACCGAGCCCGTGTTGGACACCGTCAAGCGCGACCTCGCTCGCATCGTCAGCAACCTCAAGCTCGTCGTCTTCCCAAACCCTTTCCGTGAGGACCCCGGGAAGGCGCTGCGCGACTGGGATCTCTGGGGCCCTTTCTTCTTCATCGTCTTCCTCGGCCTCACCCTCTCCTGGTCAGCCTCCGTCAAGAAGTCTGAAGTGTTTGCTGTTGCTTTTGCTGTACTAGCTGCTGGTGCTATAATTCTCACATTGAATGTGCTGCTCCTGGGTGGGCGCATCAACTTCTTTCAGAGCCTGAGTCTTCTTGGATACTGCCTGTTCCCTTTGGATGTCGGAGCTTTGATTTGCATGCTGAAGGATAATGTACTACTGAAGATCATTGCAGTAGTGGTTACATTGGCCTGGAGCTCCTGGGCAGCATATCCATTCATGAGTGCTGCTGTTAACCCAAGGAGAAAGGCGTTGGCACTATATCCTGTCTTCCTTATGTACGTCTCTGTTGGGTTCCTCATCATCGCAATAGATTAAGGGCGGAATAGTCGCTATGCTACTAATCCTGAGTTTTGTTTCCCGTTTGAGCATCATAATTCATACAGAATTAGTTACACGTTCCTGTTGTCGTTGTTGCTGACTTTTAGTTCAGCTATGATTTTTTTTTCCTTTTCTATAAG]
[+] EMBL AK102974 [CACACGTCTCCACCCTCTCTCCCCGCCGCCGTCGCGACTCGCGATCGCACGGTAAAATCGCCGCCGGTGGGCACACCGCCGCCGCGATGTCGCACGGCGACACCATCCCGCTCCACTCCTCGTCCGCGCAGTCGGACATGGACGAGATCGAGAGCCTCATCCACGCGGCGCCGCCCTCCGCGGCCGCGGTGCTCCCCGCGCGGCCGCCGTCGCCTCCGCGGGCCTCGATCCCCGTCTCCAGCTCGCCCCCCCTGCTGCCTCCTCCGGTGGCCGGGTCCAAGCCGCAGCTCCCCCCGTTCTCCTCCTCCTCCTCCGTGGCGTCGTCGTCGTCTCCGCCGCTCCCCTCCTCCGTCTCGGTCGCCATCGCCGGCGACGGGTTCGGCCCCCCGCCCAACACGCTCACCGAGCCCGTGTTGGACACCGTCAAGCGCGACCTCGCTCGCATCGTCAGCAACCTCAAGCTCGTCGTCTTCCCAAACCCTTTCCGTGAGGACCCCGGGAAGGCGCTGCGCGACTGGGATCTCTGGGGCCCTTTCTTCTTCATCGTCTTCCTCGGCCTCACCCTCTCCTGGTCAGCCTCCGTCAAGAAGTCTGAAGTGTTTGCTGTTGCTTTTGCTGTACTAGCTGCTGGTGCTATAATTCTCACATTGAATGTGCTGCTCCTGGGTGGGCGCATCAACTTCTTTCAGAGCCTGAGTCTTCTTGGATACTGCCTGTTCCCTTTGGATGTCGGAGCTTTGATTTGCATGCTGAAGGATAATGTACTACTGAAGATCATTGCAGTAGTGGTTACATTGGCCTGGAGCTCCTGGGCAGCATATCCATTCATGAGTGCTGCTGTTAACCCAAGGAGAAAGGCGTTGGCACTATATCCTGTCTTCCTTATGTACGTCTCTGTTGGGTTCCTCATCATCGCAATAGATTAAGGGCGGAATAGTCGCTATGCTACTAATCCTGAGTTTTGTTTCCCGTTTGAGCATCATAATTCATACAGAATTAGTTACACGTTCCTGTTGTCGTTGTTGCTGACTTTTAGTTCAGCTATGATTTTTTTTTCCTTTTCTATAAG]
consensusID : consensus_2843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1043 fasta sequence
[CCGGCAGGCAGGTACGCACCCACCCGCAAATCCGCACCTCCCCACCCCAACTCTCCTCCCAAACCCAGCACGCACTCCCGCGAGATCTCTCTCCGCCGCGCCACCGACGCGCCAGATCCACCACCGCCACCGCCATGTCGCACAACCACGGCGACACGATCCCGCTCCACCCGTCGTCGGCGCAGTCCGACATGGACGAGATCGAGAGCCTCATCTACGCGGCGCCCTCCGCCACCGTCCTCCCGGCGCGGCCGCCGTCCCCGCCGCGCGCCTCCATCCCGGTCTCCACCTCCCCGGCCCCGCTCCCGGCCCCCGCCAAGCCCTCCCTCCCCGGCGCGTCCGTCCCCATCATCGTGCCCCAGGCGCCGCCCGCTTCCGTCTCCGTCCCCATCGCCTCCGACGGCTTCGGCCCCCCGCCCAACACGCTCACCGAGCCCGTGTGGGACACCGTCAAGTGCGACCTCGCCCGCATCGTCAGCAACCTCAAGCTCGTCGTCTTCCCCAACCCCTACCGCGAGGACCCCGGCAAGGCGCTCAGGGATTGGGATCTCTGGGGGCCCTTCTTCTTCATCGTTTTCCTCGGCCTCACACTCTCCTGGTCCGCCTCCGTCAAGAAGTCTGAAGTATTTGCTGTTGCATTCGCTGTCCTAGCAGCTGGGGCTATAATTCTTACGCTAAATGTCTTGCTTCTGGGTGGGCACATTATCTTCTTCCAGAGCCTCAGTCTTCTTGGCTACTGTCTGTTTCCTCTGGATGTTGGAGCTCTAGTTTGCATGCTGAAGGACAATGTCATACTAAAGATCATCGTAGTGACCGTCACATTGGCATGGAGTTCCTGGGCTGCATATCCATTCATGAGTGCTGCAGTTAACCCAAGGGGAAAGGCTCAGGCCCTGTATCCCGTCTTCCTCATGTATATTTCAGTTGGTTTCCTCATAATTGCCATAGACTAATGGTGGGCTGAACTTGTAGTCAATACCTAAACCGCTGAGATTTTCCTCATTGAACCACCAGAATACATACAGGTTTGGGCAGAGAATACG]
[+] EMBL AK108852 [CCGGCAGGCAGGTACGCACCCACCCGCAAATCCGCACCTCCCCACCCCAACTCTCCTCCCAAACCCAGCACGCACTCCCGCGAGATCTCTCTCCGCCGCGCCACCGACGCGCCAGATCCACCACCGCCACCGCCATGTCGCACAACCACGGCGACACGATCCCGCTCCACCCGTCGTCGGCGCAGTCCGACATGGACGAGATCGAGAGCCTCATCTACGCGGCGCCCTCCGCCACCGTCCTCCCGGCGCGGCCGCCGTCCCCGCCGCGCGCCTCCATCCCGGTCTCCACCTCCCCGGCCCCGCTCCCGGCCCCCGCCAAGCCCTCCCTCCCCGGCGCGTCCGTCCCCATCATCGTGCCCCAGGCGCCGCCCGCTTCCGTCTCCGTCCCCATCGCCTCCGACGGCTTCGGCCCCCCGCCCAACACGCTCACCGAGCCCGTGTGGGACACCGTCAAGTGCGACCTCGCCCGCATCGTCAGCAACCTCAAGCTCGTCGTCTTCCCCAACCCCTACCGCGAGGACCCCGGCAAGGCGCTCAGGGATTGGGATCTCTGGGGGCCCTTCTTCTTCATCGTTTTCCTCGGCCTCACACTCTCCTGGTCCGCCTCCGTCAAGAAGTCTGAAGTATTTGCTGTTGCATTCGCTGTCCTAGCAGCTGGGGCTATAATTCTTACGCTAAATGTCTTGCTTCTGGGTGGGCACATTATCTTCTTCCAGAGCCTCAGTCTTCTTGGCTACTGTCTGTTTCCTCTGGATGTTGGAGCTCTAGTTTGCATGCTGAAGGACAATGTCATACTAAAGATCATCGTAGTGACCGTCACATTGGCATGGAGTTCCTGGGCTGCATATCCATTCATGAGTGCTGCAGTTAACCCAAGGGGAAAGGCTCAGGCCCTGTATCCCGTCTTCCTCATGTATATTTCAGTTGGTTTCCTCATAATTGCCATAGACTAATGGTGGGCTGAACTTGTAGTCAATACCTAAACCGCTGAGATTTTCCTCATTGAACCACCAGAATACATACAGGTTTGGGCAGAGAATACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2843#0 --------------------------------CACACGTCTCCACCCTCTCTCCCCGCCG 28
consensus_2843#1 CCGGCAGGCAGGTACGCACCCACCCGCAAATCCGCACCTCCCCACCCCAACTCTCCTCC- 59
* *** ** ****** *** ** **
consensus_2843#0 CCGTCGCGACTCGCGATCGCACGGTAAAAT---------CGCCGCCGGTGGGCA------ 73
consensus_2843#1 CAAACCCAGCACGCACTCCCGCGAGATCTCTCTCCGCCGCGCCACCGACGCGCCAGATCC 119
* * * * *** ** * ** * **** *** * **
consensus_2843#0 --CACCGCCGCCGCGATGTCGCAC------GGCGACACCATCCCGCTCCACTCCTCGTCC 125
consensus_2843#1 ACCACCGCCACCGCCATGTCGCACAACCACGGCGACACGATCCCGCTCCACCCGTCGTCG 179
******* **** ********* ******** ************ * *****
consensus_2843#0 GCGCAGTCGGACATGGACGAGATCGAGAGCCTCATCCACGCGGCGCCGCCCTCCGCGGCC 185
consensus_2843#1 GCGCAGTCCGACATGGACGAGATCGAGAGCCTCATCTACGCGGCGCCCTCC------GCC 233
******** *************************** ********** ** ***
consensus_2843#0 GCGGTGCTCCCCGCGCGGCCGCCGTCGCCTCCGCGGGCCTCGATCCCCGTCTCCAGCTCG 245
consensus_2843#1 ACCGTCCTCCCGGCGCGGCCGCCGTCCCCGCCGCGCGCCTCCATCCCGGTCTCCACCTCC 293
* ** ***** ************** ** ***** ***** ***** ******* ***
consensus_2843#0 CCCCCCCTGCTGCCTCCTCCGGTGGCCGGGTCCAAGCCGCAGCTCCCCCCGTTCTCCTCC 305
consensus_2843#1 CCGGCCCCGCTCCCGGCCCCCG---------CCAAGCC----CTCCCTCC--CCGGCGCG 338
** *** *** ** * ** * ******* ***** ** * * *
consensus_2843#0 TCCTCCTCCGTGGCGTCGTCGTCGTCTCCGCCGCTCCCCTCCTCCGTCTCGGTCGCCATC 365
consensus_2843#1 TCCGTCCCCAT--CATCGT----GCCCCAGGCGCCGCCCGCTTCCGTCTCCGTCCCCATC 392
*** * ** * * **** * * * * *** *** * ******** *** *****
consensus_2843#0 GCCGGCGACGGGTTCGGCCCCCCGCCCAACACGCTCACCGAGCCCGTGTTGGACACCGTC 425
consensus_2843#1 GCCTCCGACGGCTTCGGCCCCCCGCCCAACACGCTCACCGAGCCCGTGTGGGACACCGTC 452
*** ****** ************************************* **********
consensus_2843#0 AAGCGCGACCTCGCTCGCATCGTCAGCAACCTCAAGCTCGTCGTCTTCCCAAACCCTTTC 485
consensus_2843#1 AAGTGCGACCTCGCCCGCATCGTCAGCAACCTCAAGCTCGTCGTCTTCCCCAACCCCTAC 512
*** ********** *********************************** ***** * *
consensus_2843#0 CGTGAGGACCCCGGGAAGGCGCTGCGCGACTGGGATCTCTGGGGCCCTTTCTTCTTCATC 545
consensus_2843#1 CGCGAGGACCCCGGCAAGGCGCTCAGGGATTGGGATCTCTGGGGGCCCTTCTTCTTCATC 572
** *********** ******** * ** ************** ** ************
consensus_2843#0 GTCTTCCTCGGCCTCACCCTCTCCTGGTCAGCCTCCGTCAAGAAGTCTGAAGTGTTTGCT 605
consensus_2843#1 GTTTTCCTCGGCCTCACACTCTCCTGGTCCGCCTCCGTCAAGAAGTCTGAAGTATTTGCT 632
** ************** *********** *********************** ******
consensus_2843#0 GTTGCTTTTGCTGTACTAGCTGCTGGTGCTATAATTCTCACATTGAATGTGCTGCTCCTG 665
consensus_2843#1 GTTGCATTCGCTGTCCTAGCAGCTGGGGCTATAATTCTTACGCTAAATGTCTTGCTTCTG 692
***** ** ***** ***** ***** *********** ** * ***** **** ***
consensus_2843#0 GGTGGGCGCATCAACTTCTTTCAGAGCCTGAGTCTTCTTGGATACTGCCTGTTCCCTTTG 725
consensus_2843#1 GGTGGGCACATTATCTTCTTCCAGAGCCTCAGTCTTCTTGGCTACTGTCTGTTTCCTCTG 752
******* *** * ****** ******** *********** ***** ***** *** **
consensus_2843#0 GATGTCGGAGCTTTGATTTGCATGCTGAAGGATAATGTACTACTGAAGATCATTGCAGTA 785
consensus_2843#1 GATGTTGGAGCTCTAGTTTGCATGCTGAAGGACAATGTCATACTAAAGATCATCGTAGTG 812
***** ****** * **************** ***** **** ******** * ***
consensus_2843#0 GTGGTTACATTGGCCTGGAGCTCCTGGGCAGCATATCCATTCATGAGTGCTGCTGTTAAC 845
consensus_2843#1 ACCGTCACATTGGCATGGAGTTCCTGGGCTGCATATCCATTCATGAGTGCTGCAGTTAAC 872
** ******** ***** ******** *********************** ******
consensus_2843#0 CCAAGGAGAAAGGCGTTGGCACTATATCCTGTCTTCCTTATGTACGTCTCTGTTGGGTTC 905
consensus_2843#1 CCAAGGGGAAAGGCTCAGGCCCTGTATCCCGTCTTCCTCATGTATATTTCAGTTGGTTTC 932
****** ******* *** ** ***** ******** ***** * ** ***** ***
consensus_2843#0 CTCATCATCGCAATAGATTAAGGGCGGAATAGTCGCTATGCTA----CTAATCCTGAGTT 961
consensus_2843#1 CTCATAATTGCCATAGACTAATGGTGGGCTGAACTTGTAGTCAATACCTAAACCGCTGAG 992
***** ** ** ***** *** ** ** * * * * **** ** *
consensus_2843#0 TTGTTTCCCGTTTGAGCATCATAATTCATACAGAATTAGTTACACGTTCCTGTTGTCGTT 1021
consensus_2843#1 ATTTTCCTCATTGAACCACCAGAATACATACAGGTTTGGGCAGAGAATACG--------- 1043
* ** * * ** * ** ** *** ******* ** * * * * *
consensus_2843#0 GTTGCTGACTTTTAGTTCAGCTATGATTTTTTTTTCCTTTTCTATAAG 1069
consensus_2843#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||