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Oryza sativa
cluster # 2845 cluster # 2845       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2845#0 length = 1213 sequences # 1  
consensus_2845#1 length = 978 sequences # 1  

consensusID : consensus_2845#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1213
fasta sequence
                              [ATCGCCTCGCCGCAACCGCGACCGCGCCGGCGAGCTGCACCGCCCCCGTCGAAGTTTCCCGCGGAGCTCGTCGTTCTCGAGCCTCTTCCGATGCTTTCTGCACGGCGAGCCGGCGCCGGCGGCGCCGCCGGGAAGACGTCGCATGCTCGCCCCTGCAACCCTGGTTACCCGCGGCGCTCGTCGGTCCCGATGACCGGCGGCGACGCGACTAGACCAGCCGTGGCGAGGGCGCTTCGCCTTCCGGGTAGTGGGGGAGGGGCGGGTTTCCAGCGGCGGGAGCCCCACCGATGGCTCCGTCCCTGCTCCTCCTCCCGGAGTGGAGATGGCGCCGCCGCCGTTCTCGCCTCGCGATCCGGGAGCAGCGACATGGGCCTCGGGGTTTCTTCTTTCTCGCCGTGCTCGCTTCCCCGCCGCGTCGACGCTCCTCGCCGGCGGCCAGTGTGGTGTTCGCCGGCTGCTCCTCCTCCTCCTCCTCCTCCTCGTGTGGAGGTGCAGAGCGTCCGGAAGAGGCGAATGAGCGAGGAATGGGAGGCGTTGAAGGCAGCCATCGCCGACATGTTCCGGCCCTTGCTGCGAAACCTAGCTGACATTTGCTCTCTCCGCAGCGCCTACGACTTCGAGGACTATCAAATCGGCATGCTCTTTGGTGCGTTTCTCGGATATGTCGGGTGCTACCAGCTGTGGAAGGCGGCTCCTTCCGTCTTCGTTGATGCTGCCCTTGCCTTTGTGTTTTACAAGCTCAGCGTTGTGTCCTCAGAGCTGCACCGGCAGCGCAAGACAAACAGCTTGATCACGCGGCTTAAATTCGGGACCATACTTATCATGGTTATGAAAGACATCAAGAAGAACTATGTACTCCTGGACATTATTAGAATGCCGGTTTTCTTCCTCTACATTTGTGCGTTCGTATTCGATGTTGCTGGTATGAAGAAGTATGCCAGGCGCTCACTTATTTCATTGTTTAATCTGCTGAAATCTAGAGGTGGCATACAAGAAATATATAGGATTATGTGGTATCCTGGTTATATATCTCCATATGATGATTCTGCTGACTGGTGATGCATTTGTGTGAGTGGTTCCCACTTAGGAGCTTGTTCTAGGAAGGATGGAGCTTGTTCTAGGAAGGATGCCCTCCCCTTCACAAAGTTTTGTAAAGTATAATAACGAATAAATAGCTATGAACGTATGGTGAGTCTCTACAAAAGAAACATTC]

[+] EMBL AK102989             [ATCGCCTCGCCGCAACCGCGACCGCGCCGGCGAGCTGCACCGCCCCCGTCGAAGTTTCCCGCGGAGCTCGTCGTTCTCGAGCCTCTTCCGATGCTTTCTGCACGGCGAGCCGGCGCCGGCGGCGCCGCCGGGAAGACGTCGCATGCTCGCCCCTGCAACCCTGGTTACCCGCGGCGCTCGTCGGTCCCGATGACCGGCGGCGACGCGACTAGACCAGCCGTGGCGAGGGCGCTTCGCCTTCCGGGTAGTGGGGGAGGGGCGGGTTTCCAGCGGCGGGAGCCCCACCGATGGCTCCGTCCCTGCTCCTCCTCCCGGAGTGGAGATGGCGCCGCCGCCGTTCTCGCCTCGCGATCCGGGAGCAGCGACATGGGCCTCGGGGTTTCTTCTTTCTCGCCGTGCTCGCTTCCCCGCCGCGTCGACGCTCCTCGCCGGCGGCCAGTGTGGTGTTCGCCGGCTGCTCCTCCTCCTCCTCCTCCTCCTCGTGTGGAGGTGCAGAGCGTCCGGAAGAGGCGAATGAGCGAGGAATGGGAGGCGTTGAAGGCAGCCATCGCCGACATGTTCCGGCCCTTGCTGCGAAACCTAGCTGACATTTGCTCTCTCCGCAGCGCCTACGACTTCGAGGACTATCAAATCGGCATGCTCTTTGGTGCGTTTCTCGGATATGTCGGGTGCTACCAGCTGTGGAAGGCGGCTCCTTCCGTCTTCGTTGATGCTGCCCTTGCCTTTGTGTTTTACAAGCTCAGCGTTGTGTCCTCAGAGCTGCACCGGCAGCGCAAGACAAACAGCTTGATCACGCGGCTTAAATTCGGGACCATACTTATCATGGTTATGAAAGACATCAAGAAGAACTATGTACTCCTGGACATTATTAGAATGCCGGTTTTCTTCCTCTACATTTGTGCGTTCGTATTCGATGTTGCTGGTATGAAGAAGTATGCCAGGCGCTCACTTATTTCATTGTTTAATCTGCTGAAATCTAGAGGTGGCATACAAGAAATATATAGGATTATGTGGTATCCTGGTTATATATCTCCATATGATGATTCTGCTGACTGGTGATGCATTTGTGTGAGTGGTTCCCACTTAGGAGCTTGTTCTAGGAAGGATGGAGCTTGTTCTAGGAAGGATGCCCTCCCCTTCACAAAGTTTTGTAAAGTATAATAACGAATAAATAGCTATGAACGTATGGTGAGTCTCTACAAAAGAAACATTC]


>consensus_2845#0 ATCGCCTCGCCGCAACCGCGACCGCGCCGGCGAGCTGCACCGCCCCCGTCGAAGTTTCCC GCGGAGCTCGTCGTTCTCGAGCCTCTTCCGATGCTTTCTGCACGGCGAGCCGGCGCCGGC GGCGCCGCCGGGAAGACGTCGCATGCTCGCCCCTGCAACCCTGGTTACCCGCGGCGCTCG TCGGTCCCGATGACCGGCGGCGACGCGACTAGACCAGCCGTGGCGAGGGCGCTTCGCCTT CCGGGTAGTGGGGGAGGGGCGGGTTTCCAGCGGCGGGAGCCCCACCGATGGCTCCGTCCC TGCTCCTCCTCCCGGAGTGGAGATGGCGCCGCCGCCGTTCTCGCCTCGCGATCCGGGAGC AGCGACATGGGCCTCGGGGTTTCTTCTTTCTCGCCGTGCTCGCTTCCCCGCCGCGTCGAC GCTCCTCGCCGGCGGCCAGTGTGGTGTTCGCCGGCTGCTCCTCCTCCTCCTCCTCCTCCT CGTGTGGAGGTGCAGAGCGTCCGGAAGAGGCGAATGAGCGAGGAATGGGAGGCGTTGAAG GCAGCCATCGCCGACATGTTCCGGCCCTTGCTGCGAAACCTAGCTGACATTTGCTCTCTC CGCAGCGCCTACGACTTCGAGGACTATCAAATCGGCATGCTCTTTGGTGCGTTTCTCGGA TATGTCGGGTGCTACCAGCTGTGGAAGGCGGCTCCTTCCGTCTTCGTTGATGCTGCCCTT GCCTTTGTGTTTTACAAGCTCAGCGTTGTGTCCTCAGAGCTGCACCGGCAGCGCAAGACA AACAGCTTGATCACGCGGCTTAAATTCGGGACCATACTTATCATGGTTATGAAAGACATC AAGAAGAACTATGTACTCCTGGACATTATTAGAATGCCGGTTTTCTTCCTCTACATTTGT GCGTTCGTATTCGATGTTGCTGGTATGAAGAAGTATGCCAGGCGCTCACTTATTTCATTG TTTAATCTGCTGAAATCTAGAGGTGGCATACAAGAAATATATAGGATTATGTGGTATCCT GGTTATATATCTCCATATGATGATTCTGCTGACTGGTGATGCATTTGTGTGAGTGGTTCC CACTTAGGAGCTTGTTCTAGGAAGGATGGAGCTTGTTCTAGGAAGGATGCCCTCCCCTTC ACAAAGTTTTGTAAAGTATAATAACGAATAAATAGCTATGAACGTATGGTGAGTCTCTAC AAAAGAAACATTC



consensusID : consensus_2845#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 978
fasta sequence
                              [CAATTGTATAGTTTTGAGAAAATCCATGAAATGCCATCGACAAGCACTCTAATCCTAGAAATGCCATCGACAAAAGCAACTTCCCAGAAATACCATTGTACAAGCCTCTTTCTCCCAAAAATACCATCATAGTCAACTCTACACCGTTACAACCGTTATTTTTTTTGATAATGACCATTTTACCCTCAGTGCAGGATATACCAGTTTTCACGGTAAAAGAAAAAGAAAGATGAAACGGTGAAAATTTCTAACGCTAACCCTAAACCGAACCCAATCCAGGCGGCTCTCCCGGCGGCGGCGCGGCGGTCCACGGCGGCGGTGGTGCGGGGCTCGGCAACGGCGGCGAGGAGGTTGCAGGCGACGGCGAGGCGGCGGTCCACGGCGGCGGTGCGGCGGTCCACAGCGGTGGCGAGGGAGAGGCGGGTTTCCAGCGGGGTGCGGGGGCTCGGCGACGGCGGCGTGGCAGCGGTCCACAGCGGCGACGAGGAGGTTGCAGGCGGCGGCGAGGCTGTCCACAGCGGCGGTGGCGCGGGGCTCGGCGGCAGTCCACGGTGGCGGCGCGGCGGTCCACAGCGGAGGCGAGGGAGAGACGGGTTTCCAGCGGTGGGTTTCCAGCCTTCCTGGTAGTGGGGGAGAGGCGGGTTTCCAGCGGCGGAAGCCCCACCGATGGCTCCATCCCTGCTCCTCCTCCCAAAGAATAGCTACCGGACCTCGGAGTGGAGATGGCGCTGTCGCCGTTCTTGCCTCGCGACCCGGGAGCAGTGGACATTGGCCTCGGGGTTTTTTCTTTCTCGCTGTGCTCACTTCCCCACCGCATCGACGCTCCTCGCCGACGACCAGTGGTAGGTGAAGTTTCTTTTGGATTTCTCTTACGATGCAGAAATGCTGAGTTGCTGCATGTGCAGTGAGTCCGGAAGCGGCGAATGTGTGAAATTTTTTTTGAATCTGATTTCTGTGAATTTAATTCTGAAATGATTT]

[+] EMBL AK111256             [CAATTGTATAGTTTTGAGAAAATCCATGAAATGCCATCGACAAGCACTCTAATCCTAGAAATGCCATCGACAAAAGCAACTTCCCAGAAATACCATTGTACAAGCCTCTTTCTCCCAAAAATACCATCATAGTCAACTCTACACCGTTACAACCGTTATTTTTTTTGATAATGACCATTTTACCCTCAGTGCAGGATATACCAGTTTTCACGGTAAAAGAAAAAGAAAGATGAAACGGTGAAAATTTCTAACGCTAACCCTAAACCGAACCCAATCCAGGCGGCTCTCCCGGCGGCGGCGCGGCGGTCCACGGCGGCGGTGGTGCGGGGCTCGGCAACGGCGGCGAGGAGGTTGCAGGCGACGGCGAGGCGGCGGTCCACGGCGGCGGTGCGGCGGTCCACAGCGGTGGCGAGGGAGAGGCGGGTTTCCAGCGGGGTGCGGGGGCTCGGCGACGGCGGCGTGGCAGCGGTCCACAGCGGCGACGAGGAGGTTGCAGGCGGCGGCGAGGCTGTCCACAGCGGCGGTGGCGCGGGGCTCGGCGGCAGTCCACGGTGGCGGCGCGGCGGTCCACAGCGGAGGCGAGGGAGAGACGGGTTTCCAGCGGTGGGTTTCCAGCCTTCCTGGTAGTGGGGGAGAGGCGGGTTTCCAGCGGCGGAAGCCCCACCGATGGCTCCATCCCTGCTCCTCCTCCCAAAGAATAGCTACCGGACCTCGGAGTGGAGATGGCGCTGTCGCCGTTCTTGCCTCGCGACCCGGGAGCAGTGGACATTGGCCTCGGGGTTTTTTCTTTCTCGCTGTGCTCACTTCCCCACCGCATCGACGCTCCTCGCCGACGACCAGTGGTAGGTGAAGTTTCTTTTGGATTTCTCTTACGATGCAGAAATGCTGAGTTGCTGCATGTGCAGTGAGTCCGGAAGCGGCGAATGTGTGAAATTTTTTTTGAATCTGATTTCTGTGAATTTAATTCTGAAATGATTT]


>consensus_2845#1 CAATTGTATAGTTTTGAGAAAATCCATGAAATGCCATCGACAAGCACTCTAATCCTAGAA ATGCCATCGACAAAAGCAACTTCCCAGAAATACCATTGTACAAGCCTCTTTCTCCCAAAA ATACCATCATAGTCAACTCTACACCGTTACAACCGTTATTTTTTTTGATAATGACCATTT TACCCTCAGTGCAGGATATACCAGTTTTCACGGTAAAAGAAAAAGAAAGATGAAACGGTG AAAATTTCTAACGCTAACCCTAAACCGAACCCAATCCAGGCGGCTCTCCCGGCGGCGGCG CGGCGGTCCACGGCGGCGGTGGTGCGGGGCTCGGCAACGGCGGCGAGGAGGTTGCAGGCG ACGGCGAGGCGGCGGTCCACGGCGGCGGTGCGGCGGTCCACAGCGGTGGCGAGGGAGAGG CGGGTTTCCAGCGGGGTGCGGGGGCTCGGCGACGGCGGCGTGGCAGCGGTCCACAGCGGC GACGAGGAGGTTGCAGGCGGCGGCGAGGCTGTCCACAGCGGCGGTGGCGCGGGGCTCGGC GGCAGTCCACGGTGGCGGCGCGGCGGTCCACAGCGGAGGCGAGGGAGAGACGGGTTTCCA GCGGTGGGTTTCCAGCCTTCCTGGTAGTGGGGGAGAGGCGGGTTTCCAGCGGCGGAAGCC CCACCGATGGCTCCATCCCTGCTCCTCCTCCCAAAGAATAGCTACCGGACCTCGGAGTGG AGATGGCGCTGTCGCCGTTCTTGCCTCGCGACCCGGGAGCAGTGGACATTGGCCTCGGGG TTTTTTCTTTCTCGCTGTGCTCACTTCCCCACCGCATCGACGCTCCTCGCCGACGACCAG TGGTAGGTGAAGTTTCTTTTGGATTTCTCTTACGATGCAGAAATGCTGAGTTGCTGCATG TGCAGTGAGTCCGGAAGCGGCGAATGTGTGAAATTTTTTTTGAATCTGATTTCTGTGAAT TTAATTCTGAAATGATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2845#0      ATCGCCTCGCCGCAACCGCGACCGCGCCGGCGAGCTGCACCGCCCCCGTCGAAGTTTCCC 60
consensus_2845#1      -------------------------------CAATTGTATAGTTTTGA--GAAAATCCAT 27
                                                      *  ** *  *        ***  * *  

consensus_2845#0      GCGGAGC--TCGTC--GTTCTCGAGCCTCTTCCGATGCTTTCTGCACGGCGAGCCGGCGC 116
consensus_2845#1      GAAATGCCATCGACAAGCACTCTAATC-CTAGAAATGCCATCGACAAAAGCAACT--TCC 84
                      *    **  *** *  *  *** *  * **    ****  **  **     * *     *

consensus_2845#0      CGGCGGCGCCGCCGGGAAGACGTCGCATGCTCGCCCCTGCAACCCTGGTTACCCGCGGCG 176
consensus_2845#1      CAGAAATACCATTGTACAAGCCTCTTTCTCCCAAAAATACCATCATAGTCAACTCTACAC 144
                      * *     **   *   *  * **     * *     * * * * * ** * *       

consensus_2845#0      CTCGTCGGTCCCGATGACCGGCGGCGACGCGACTAGACCAGCCGTGGCG-AGGGCGCTTC 235
consensus_2845#1      CGTTACAACCGTTATTTTTTTTGATAATG--ACCATTTTACCCTCAGTGCAGGATATACC 202
                      *    *   *   **       *   * *  ** *    * **   * * ***      *

consensus_2845#0      GCCTTCCGGGTAGTGGGGGAGGGGCGGGTTTCCAGCGGCGGGAGCCCCACCGATGGCTCC 295
consensus_2845#1      AGTTTTCA--CGGTAAAAGAAAAAGAAAGATGAAACGGTGAAAATTTC-----TAACGCT 255
                         ** *     **    **          *  * *** *  *    *     *  * * 

consensus_2845#0      GTCCCTGCTCCTCCTCCCGGAGTGGAGATGGCGCCGCCGCCGTTCTCGCCTCGCGATCCG 355
consensus_2845#1      AACCCTAAACCGAACCC---AATCCAGGCGGCTCTCCCGGCGGCGGCGCGGCGGTCCACG 312
                        ****   **    **   * *  **  *** *  *** **    ***  **     **

consensus_2845#0      GGAGCAGCGACATGGGCCTCGGGGTTTCTTCTTTCTCGCCGTGCTCGCTTCCC-CGCCGC 414
consensus_2845#1      GCGGCGGTGGTGCGGGGCTCGG-----CAACGGCGGCGAGGAGGTTGCAGGCGACGGCGA 367
                      *  ** * *    *** *****     *  *     **  * * * **   *  ** ** 

consensus_2845#0      GTCGACGCTCCTCGCCGGCGGCCAGTGTGGTGTTCGCCGGCTGCTCCTCCTCCTCCTCCT 474
consensus_2845#1      GGCGGCGGTCCACGGCGGCGG----TGCGGCGGTCCACAGCGGTGGCGAGGGAGAGGCGG 423
                      * ** ** *** ** ******    ** ** * **  * ** *   *          *  

consensus_2845#0      CCTCCTCGTGTGGAGGTGCAGAGCGTCCGGAAGAGGCGAATGAGCGAGGAATGGGAGGCG 534
consensus_2845#1      GTTTCCAGCG---GGGTGCGGGG-GCTCGGCGACGGCG----------GCGTGGCAGCGG 469
                        * *  * *    ***** * * *  ***    ****          *  *** **  *

consensus_2845#0      TTGAAGGCAGCCATCGCCGACATGTTCCGGCCCTTGCTGCGAAACCTAGCTGACATTTGC 594
consensus_2845#1      TCCACAGCGGCGA---CGAGGAGGTTGCAGGC--GGCGGCGAGGCT--GTCCACAGCGGC 522
                      *  *  ** ** *   *    * *** * * *   ** ****  *   *   ***   **

consensus_2845#0      TCTCTCCGCAGCGCCTACGACTTCGAGGACTATCAAATCGGCATGCTCTTTGGTGCGTTT 654
consensus_2845#1      GGTGGCGCGGGGCTCGGCGGCAGTCCACGGTGGCGGCGCGGC--GGTCCACAGCGGAGGC 580
                        *  *    *   *  ** *         *  *    ****  * **    * *     

consensus_2845#0      CTCGGATATGTCGGGTGCTACCAGCTGTGGAAGGCGGCTCCTTCCGTCTTCGTTGATGCT 714
consensus_2845#1      GAGGGAGA-GACGGGT--TTCCAGCGGTGGGTTTCCAGCCTTCCTGGTAGTGGGGGAGAG 637
                         *** * * *****  * ***** ****    *    * * * *     *  *  *  

consensus_2845#0      GCCCTTGCCTTTGTGTTTTACAAGCTCAGCGTTGTGTCCTCAGAGCTGCACCGGCAGCGC 774
consensus_2845#1      GC---GGGTTTCCAGCGGCGGAAGCCCCAC-CGATGGCTCCATCCCTGCTCCTCCTCCCA 693
                      **    *  **   *      **** *  *    ** *  **   **** **  *  *  

consensus_2845#0      AAGACAAACAGCTTGATCACGCGGCTTAAATTCGGGACCATACTTATCATGGTTATGAAA 834
consensus_2845#1      AAGAATAGCTACCGGACCTCGGAGTGGAGAT--GGCGCTGTCGCCGTTCTTGCCTCGCGA 751
                      ****  * *  *  ** * **  *   * **  **  *  *     *  * *    *  *

consensus_2845#0      GACATCAAGAA-GAACTATGTACTCCTGGACATTATTAGAATGCCGGTTTTCTTCCTCTA 893
consensus_2845#1      CCCGGGAGCAGTGGACATTGGCCTCGGGGTTTTTTCTTTCTCGCTGTGCTCACTTCCCCA 811
                        *   *  *  * **  **  ***  **   **  *     ** *   *   * * * *

consensus_2845#0      CATTTGTGCGTTCGTATTCGATGTTGCTGGTATGAAGAAGTATGCCAGGCGCTCACTTAT 953
consensus_2845#1      C-----CGCATCGACGCTCC---TCGCCGACGACCAGTGGTAGGTGAAGTTTCTTTTGGA 863
                      *      ** *      **    * ** *      **  *** *  * *       *   

consensus_2845#0      TTCATTGTTTAATCTGCTGAAATCTAGAGGTGGCATACAAGAAATATATAGGATTATGTG 1013
consensus_2845#1      TTTCTCTTACGAT--GCAGAAATGCTGAGTTGCTGCATGTGCAGTGAGTCCGG--AAGCG 919
                      **  *  *   **  ** *****   *** **    *   * * *   *  *   * * *

consensus_2845#0      GTATCCTGGTTATATATCTCCATATGATGATTCTGCTGACTGGTGATGCATTTGTGTGAG 1073
consensus_2845#1      GCGAATGTGTGAAATTTTTTT------TGAATCTGATTTCTGTGAATTTAATTCTG-AAA 972
                      *       ** * ** * *        *** **** *  ***   **  * ** **  * 

consensus_2845#0      TGGTTCCCACTTAGGAGCTTGTTCTAGGAAGGATGGAGCTTGTTCTAGGAAGGATGCCCT 1133
consensus_2845#1      TGATTT------------------------------------------------------ 978
                      ** **                                                       

consensus_2845#0      CCCCTTCACAAAGTTTTGTAAAGTATAATAACGAATAAATAGCTATGAACGTATGGTGAG 1193
consensus_2845#1      ------------------------------------------------------------
                                                                                  

consensus_2845#0      TCTCTACAAAAGAAACATTC 1213
consensus_2845#1      --------------------
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)