These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1369 fasta sequence [GAACTCCCAAAACCTCTTCTGCGGCGGCCGCTTTCGTTAGTCATCGCCGGCCTTCCAAATGCCGTCCTCCCCGTGGATCCCCACCGCCGGCGCTCCGCCGCCGCGGGCAGCGCCGGCCGTGGTCTACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAGGAGCAGGAGCAGGCGCTTCCAACGCGCAGGAGTCCAGGCCCCGCGTTTCTCCGGCGGAGAACTCTGAAGTGGAAACCCGAGAGCATGAAGAGAAGGTCAACAAATATCAGGCTGTCCTTGCAGCTCGTTTGAAGGCCAAATACTTTTCTGGCAAGGCTTTTGGTAAAGGTACCAGTGCACTCCAATCTTATGACAATAGTATGGCATGGCATATTATGGTTTACAGAAGATTTGCTTGTTTGTTCAGGCAGTCAGATATCTGCCTGGTTAGATTATCTTTTTTTTTTTTTAAAAAAAACTTTGATATCTAATAGATCATTTCCTGCATGTTAGCTTAGAAGAAAGCTCAACTGTATGGTTCAACAATTGACATGGAATCTTCAAATGGTCTGAGTCATGATCCACTAAATCAACAAACACAATTAGTCTGTGTCATGTTTTGGCCTTGAGATGCAACCTGTCATTACTAAAAGATATTTATATTATTGAATCCAAGATATGCTAAGTTGACTATCCTAACAATCATCTCGAAGAAATGCATTAATATGCCTTCCTTACTTTGTAAGGATAGCCAGTGACCAGATGTGGTAGTAGAGTTTGCCTTTTTGTTTTCTTACTAATGAATTAACTTCAAGTGATAGTTTTTTTCCCCGTATTGACAATGATTTTTTTTTTAACGTTTCACCATTTGGTGGACAGAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAGACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGCCGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCCAAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTGTCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGATGAGGGTTGGGTAGTTACATTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAAACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCTGTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATTATTCCTCTAGGGGGATGTCTCCAACATTTTACCTGTCACCATAGTACTCAC] [+] EMBL AK110869 [GAACTCCCAAAACCTCTTCTGCGGCGGCCGCTTTCGTTAGTCATCGCCGGCCTTCCAAATGCCGTCCTCCCCGTGGATCCCCACCGCCGGCGCTCCGCCGCCGCGGGCAGCGCCGGCCGTGGTCTACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAGGAGCAGGAGCAGGCGCTTCCAACGCGCAGGAGTCCAGGCCCCGCGTTTCTCCGGCGGAGAACTCTGAAGTGGAAACCCGAGAGCATGAAGAGAAGGTCAACAAATATCAGGCTGTCCTTGCAGCTCGTTTGAAGGCCAAATACTTTTCTGGCAAGGCTTTTGGTAAAGGTACCAGTGCACTCCAATCTTATGACAATAGTATGGCATGGCATATTATGGTTTACAGAAGATTTGCTTGTTTGTTCAGGCAGTCAGATATCTGCCTGGTTAGATTATCTTTTTTTTTTTTTAAAAAAAACTTTGATATCTAATAGATCATTTCCTGCATGTTAGCTTAGAAGAAAGCTCAACTGTATGGTTCAACAATTGACATGGAATCTTCAAATGGTCTGAGTCATGATCCACTAAATCAACAAACACAATTAGTCTGTGTCATGTTTTGGCCTTGAGATGCAACCTGTCATTACTAAAAGATATTTATATTATTGAATCCAAGATATGCTAAGTTGACTATCCTAACAATCATCTCGAAGAAATGCATTAATATGCCTTCCTTACTTTGTAAGGATAGCCAGTGACCAGATGTGGTAGTAGAGTTTGCCTTTTTGTTTTCTTACTAATGAATTAACTTCAAGTGATAGTTTTTTTCCCCGTATTGACAATGATTTTTTTTTTAACGTTTCACCATTTGGTGGACAGAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAGACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGCCGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCCAAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTGTCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGATGAGGGTTGGGTAGTTACATTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAAACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCTGTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATTATTCCTCTAGGGGGATGTCTCCAACATTTTACCTGTCACCATAGTACTCAC] consensusID : consensus_2859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 761 fasta sequence [TCCAAATGCCGTCCTCCCCGTGGATCCCCACCGCCGGCGCTCCGCCGCCGCGGGCAGCGCCGGCCGTGGTCTACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAGGAGCAGGAGCAGGCGCTTCCAACGCGCAGGAGTCCAGGCCCCGCGTTTCTCCGGCGGAGAACTCTGAAGTGGAAACCCGAGAGCATGAAGAGAAGGTCAACAAATATCAGGCTGTCCTTGCAGCTCGTTTGAAGGCCAAATACTTTTCTGGCAAGGCTTTTGGTAAAGAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAGACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGCCGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCCAAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTGTCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGATGAGGGTTGGGTAGTTACTTTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAAACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCTGTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATTATTCCTCTAGGGGGATGTCTCCAACAT] [+] EMBL AK103460 [TCCAAATGCCGTCCTCCCCGTGGATCCCCACCGCCGGCGCTCCGCCGCCGCGGGCAGCGCCGGCCGTGGTCTACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAGGAGCAGGAGCAGGCGCTTCCAACGCGCAGGAGTCCAGGCCCCGCGTTTCTCCGGCGGAGAACTCTGAAGTGGAAACCCGAGAGCATGAAGAGAAGGTCAACAAATATCAGGCTGTCCTTGCAGCTCGTTTGAAGGCCAAATACTTTTCTGGCAAGGCTTTTGGTAAAGAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAGACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGCCGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCCAAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTGTCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGATGAGGGTTGGGTAGTTACTTTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAAACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCTGTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATTATTCCTCTAGGGGGATGTCTCCAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2859#0 GAACTCCCAAAACCTCTTCTGCGGCGGCCGCTTTCGTTAGTCATCGCCGGCCTTCCAAAT 60 consensus_2859#1 ------------------------------------------------------------ consensus_2859#0 GCCGTCCTCCCCGTGGATCCCCACCGCCGGCGCTCCGCCGCCGCGGGCAGCGCCGGCCGT 120 consensus_2859#1 ------------------------------------------------------------ consensus_2859#0 GGTCTACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAGGAGCAGGAGCAGGCGC 180 consensus_2859#1 ------------------------------------------------------------ consensus_2859#0 TTCCAACGCGCAGGAGTCCAGGCCCCGCGTTTCTCCGGCGGAGAACTCTGAAGTGGAAAC 240 consensus_2859#1 ------------------------------------------------------------ consensus_2859#0 CCGAGAGCATGAAGAGAAGGTCAACAAATATCAGGCTGTCCTTGCAGCTCGTTTGAAGGC 300 consensus_2859#1 ------------------------------------------------------------ consensus_2859#0 CAAATACTTTTCTGGCAAGGCTTTTGGTAAAGGTACCAGTGCACTCCAATCTTATGACAA 360 consensus_2859#1 ------------------------------------------------------------ consensus_2859#0 TAGTATGGCATGGCATATTATGGTTTACAGAAGATTTGCTTGTTTGTTCAGGCAGTCAGA 420 consensus_2859#1 ------------------------------------------------------------ consensus_2859#0 TATCTGCCTGGTTAGATTATCTTTTTTTTTTTTTAAAAAAAACTTTGATATCTAATAGAT 480 consensus_2859#1 ------------------------------------------------------------ consensus_2859#0 CATTTCCTGCATGTTAGCTTAGAAGAAAGCTCAACTGTATGGTTCAACAATTGACATGGA 540 consensus_2859#1 ------------------------------------------------------------ consensus_2859#0 ATCTTCAAATG--GTCTGAGTCATGATCCACTAAATCAACAAACACAATTAGTCTGTGTC 598 consensus_2859#1 ---TCCAAATGCCGTCCTCCCCGTGGATCCCCA---CCGCCGGCGCTCCGCCGCCGCGGG 54 * ****** *** * ** * * * * * * * * * * consensus_2859#0 ATGTTTTGGCCTTGAGATGCAACCTGTCATTACTAAAAGATATTTATATTATTGAATCCA 658 consensus_2859#1 CAGCGCCGGCCGTGGTCT---ACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAG 111 * **** ** * ** * * * * * * ** * consensus_2859#0 AGATATGCTAAGTTGACTATCCTAACAATCATCTCGAAGAAATGCATTAATATGCCTTCC 718 consensus_2859#1 GAGCAGG---AGCAGGCGCTTCCAACG-------CGCAGGAGTCCAG----GCCCCGCGT 157 * * ** * * * * *** ** ** * * ** ** consensus_2859#0 TTACTTTGTAAGGATAGCCAGTGACCAGATGTGGTAGTAGAGTTTGCCTTTTTGTTTTCT 778 consensus_2859#1 TTCTCCGGCGGAGAACTCTGAAGTGGAAACCCGAGAGCATGAAGAGAA------------ 205 ** * ** * * * * * ** * * consensus_2859#0 TACTAATGAATTAACTTCAAGTGATAGTTTTTTTCCCCGTATTGACAATGATTTTTTTTT 838 consensus_2859#1 ----GGTCAACAAATATCAGGCTGT--CCTTGCAGCTCGTTTGAAGGCCAAATACTTTTC 259 * ** ** *** * * ** * *** * * * * **** consensus_2859#0 TAACGTTTCACCATTTGGTGGACAGAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAG 898 consensus_2859#1 TGGCAA---GGCTTTTGGTAAA--GAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAG 314 * * * ****** * ************************************ consensus_2859#0 ACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGC 958 consensus_2859#1 ACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGC 374 ************************************************************ consensus_2859#0 CGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCC 1018 consensus_2859#1 CGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCC 434 ************************************************************ consensus_2859#0 AAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTG 1078 consensus_2859#1 AAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTG 494 ************************************************************ consensus_2859#0 TCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGA 1138 consensus_2859#1 TCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGA 554 ************************************************************ consensus_2859#0 TGAGGGTTGGGTAGTTACATTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAA 1198 consensus_2859#1 TGAGGGTTGGGTAGTTACTTTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAA 614 ****************** ***************************************** consensus_2859#0 ACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCT 1258 consensus_2859#1 ACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCT 674 ************************************************************ consensus_2859#0 GTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATT 1318 consensus_2859#1 GTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATT 734 ************************************************************ consensus_2859#0 ATTCCTCTAGGGGGATGTCTCCAACATTTTACCTGTCACCATAGTACTCAC 1369 consensus_2859#1 ATTCCTCTAGGGGGATGTCTCCAACAT------------------------ 761 *************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||