cluster # 2859

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Oryza sativa
cluster # 2859 cluster # 2859 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2859#0 length = 1369 sequences # 1

consensus_2859#1 length = 761 sequences # 1

consensusID : consensus_2859#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1369
fasta sequence

                              [GAACTCCCAAAACCTCTTCTGCGGCGGCCGCTTTCGTTAGTCATCGCCGGCCTTCCAAATGCCGTCCTCCCCGTGGATCCCCACCGCCGGCGCTCCGCCGCCGCGGGCAGCGCCGGCCGTGGTCTACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAGGAGCAGGAGCAGGCGCTTCCAACGCGCAGGAGTCCAGGCCCCGCGTTTCTCCGGCGGAGAACTCTGAAGTGGAAACCCGAGAGCATGAAGAGAAGGTCAACAAATATCAGGCTGTCCTTGCAGCTCGTTTGAAGGCCAAATACTTTTCTGGCAAGGCTTTTGGTAAAGGTACCAGTGCACTCCAATCTTATGACAATAGTATGGCATGGCATATTATGGTTTACAGAAGATTTGCTTGTTTGTTCAGGCAGTCAGATATCTGCCTGGTTAGATTATCTTTTTTTTTTTTTAAAAAAAACTTTGATATCTAATAGATCATTTCCTGCATGTTAGCTTAGAAGAAAGCTCAACTGTATGGTTCAACAATTGACATGGAATCTTCAAATGGTCTGAGTCATGATCCACTAAATCAACAAACACAATTAGTCTGTGTCATGTTTTGGCCTTGAGATGCAACCTGTCATTACTAAAAGATATTTATATTATTGAATCCAAGATATGCTAAGTTGACTATCCTAACAATCATCTCGAAGAAATGCATTAATATGCCTTCCTTACTTTGTAAGGATAGCCAGTGACCAGATGTGGTAGTAGAGTTTGCCTTTTTGTTTTCTTACTAATGAATTAACTTCAAGTGATAGTTTTTTTCCCCGTATTGACAATGATTTTTTTTTTAACGTTTCACCATTTGGTGGACAGAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAGACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGCCGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCCAAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTGTCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGATGAGGGTTGGGTAGTTACATTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAAACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCTGTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATTATTCCTCTAGGGGGATGTCTCCAACATTTTACCTGTCACCATAGTACTCAC]

[+] EMBL AK110869             [GAACTCCCAAAACCTCTTCTGCGGCGGCCGCTTTCGTTAGTCATCGCCGGCCTTCCAAATGCCGTCCTCCCCGTGGATCCCCACCGCCGGCGCTCCGCCGCCGCGGGCAGCGCCGGCCGTGGTCTACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAGGAGCAGGAGCAGGCGCTTCCAACGCGCAGGAGTCCAGGCCCCGCGTTTCTCCGGCGGAGAACTCTGAAGTGGAAACCCGAGAGCATGAAGAGAAGGTCAACAAATATCAGGCTGTCCTTGCAGCTCGTTTGAAGGCCAAATACTTTTCTGGCAAGGCTTTTGGTAAAGGTACCAGTGCACTCCAATCTTATGACAATAGTATGGCATGGCATATTATGGTTTACAGAAGATTTGCTTGTTTGTTCAGGCAGTCAGATATCTGCCTGGTTAGATTATCTTTTTTTTTTTTTAAAAAAAACTTTGATATCTAATAGATCATTTCCTGCATGTTAGCTTAGAAGAAAGCTCAACTGTATGGTTCAACAATTGACATGGAATCTTCAAATGGTCTGAGTCATGATCCACTAAATCAACAAACACAATTAGTCTGTGTCATGTTTTGGCCTTGAGATGCAACCTGTCATTACTAAAAGATATTTATATTATTGAATCCAAGATATGCTAAGTTGACTATCCTAACAATCATCTCGAAGAAATGCATTAATATGCCTTCCTTACTTTGTAAGGATAGCCAGTGACCAGATGTGGTAGTAGAGTTTGCCTTTTTGTTTTCTTACTAATGAATTAACTTCAAGTGATAGTTTTTTTCCCCGTATTGACAATGATTTTTTTTTTAACGTTTCACCATTTGGTGGACAGAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAGACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGCCGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCCAAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTGTCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGATGAGGGTTGGGTAGTTACATTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAAACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCTGTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATTATTCCTCTAGGGGGATGTCTCCAACATTTTACCTGTCACCATAGTACTCAC]




>consensus_2859#0
GAACTCCCAAAACCTCTTCTGCGGCGGCCGCTTTCGTTAGTCATCGCCGGCCTTCCAAAT
GCCGTCCTCCCCGTGGATCCCCACCGCCGGCGCTCCGCCGCCGCGGGCAGCGCCGGCCGT
GGTCTACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAGGAGCAGGAGCAGGCGC
TTCCAACGCGCAGGAGTCCAGGCCCCGCGTTTCTCCGGCGGAGAACTCTGAAGTGGAAAC
CCGAGAGCATGAAGAGAAGGTCAACAAATATCAGGCTGTCCTTGCAGCTCGTTTGAAGGC
CAAATACTTTTCTGGCAAGGCTTTTGGTAAAGGTACCAGTGCACTCCAATCTTATGACAA
TAGTATGGCATGGCATATTATGGTTTACAGAAGATTTGCTTGTTTGTTCAGGCAGTCAGA
TATCTGCCTGGTTAGATTATCTTTTTTTTTTTTTAAAAAAAACTTTGATATCTAATAGAT
CATTTCCTGCATGTTAGCTTAGAAGAAAGCTCAACTGTATGGTTCAACAATTGACATGGA
ATCTTCAAATGGTCTGAGTCATGATCCACTAAATCAACAAACACAATTAGTCTGTGTCAT
GTTTTGGCCTTGAGATGCAACCTGTCATTACTAAAAGATATTTATATTATTGAATCCAAG
ATATGCTAAGTTGACTATCCTAACAATCATCTCGAAGAAATGCATTAATATGCCTTCCTT
ACTTTGTAAGGATAGCCAGTGACCAGATGTGGTAGTAGAGTTTGCCTTTTTGTTTTCTTA
CTAATGAATTAACTTCAAGTGATAGTTTTTTTCCCCGTATTGACAATGATTTTTTTTTTA
ACGTTTCACCATTTGGTGGACAGAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAGAC
CATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGCCG
GGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCCAA
GCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTGTC
TGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGATG
AGGGTTGGGTAGTTACATTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAAAC
ATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCTGT
TGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATTAT
TCCTCTAGGGGGATGTCTCCAACATTTTACCTGTCACCATAGTACTCAC

consensusID : consensus_2859#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 761
fasta sequence

                              [TCCAAATGCCGTCCTCCCCGTGGATCCCCACCGCCGGCGCTCCGCCGCCGCGGGCAGCGCCGGCCGTGGTCTACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAGGAGCAGGAGCAGGCGCTTCCAACGCGCAGGAGTCCAGGCCCCGCGTTTCTCCGGCGGAGAACTCTGAAGTGGAAACCCGAGAGCATGAAGAGAAGGTCAACAAATATCAGGCTGTCCTTGCAGCTCGTTTGAAGGCCAAATACTTTTCTGGCAAGGCTTTTGGTAAAGAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAGACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGCCGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCCAAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTGTCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGATGAGGGTTGGGTAGTTACTTTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAAACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCTGTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATTATTCCTCTAGGGGGATGTCTCCAACAT]

[+] EMBL AK103460             [TCCAAATGCCGTCCTCCCCGTGGATCCCCACCGCCGGCGCTCCGCCGCCGCGGGCAGCGCCGGCCGTGGTCTACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAGGAGCAGGAGCAGGCGCTTCCAACGCGCAGGAGTCCAGGCCCCGCGTTTCTCCGGCGGAGAACTCTGAAGTGGAAACCCGAGAGCATGAAGAGAAGGTCAACAAATATCAGGCTGTCCTTGCAGCTCGTTTGAAGGCCAAATACTTTTCTGGCAAGGCTTTTGGTAAAGAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAGACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGCCGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCCAAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTGTCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGATGAGGGTTGGGTAGTTACTTTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAAACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCTGTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATTATTCCTCTAGGGGGATGTCTCCAACAT]




>consensus_2859#1
TCCAAATGCCGTCCTCCCCGTGGATCCCCACCGCCGGCGCTCCGCCGCCGCGGGCAGCGC
CGGCCGTGGTCTACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAGGAGCAGGAG
CAGGCGCTTCCAACGCGCAGGAGTCCAGGCCCCGCGTTTCTCCGGCGGAGAACTCTGAAG
TGGAAACCCGAGAGCATGAAGAGAAGGTCAACAAATATCAGGCTGTCCTTGCAGCTCGTT
TGAAGGCCAAATACTTTTCTGGCAAGGCTTTTGGTAAAGAAAATGTGTTTGAAGAAATGA
CTATCCAGTCTGAGACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATC
CAGCAAAATTTTGCCGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAA
ATGCCTCCTTTGCCAAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAAT
TAGCGGACAGTTTGTCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAA
TACCACCTAATGGATGAGGGTTGGGTAGTTACTTTATTAACTACATATGTTATCCTTAAA
CTAAATGAACTGAAACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTT
CTTCTTGTAGGCCTGTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATG
CTCATATTGAGATTATTCCTCTAGGGGGATGTCTCCAACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2859#0      GAACTCCCAAAACCTCTTCTGCGGCGGCCGCTTTCGTTAGTCATCGCCGGCCTTCCAAAT 60
consensus_2859#1      ------------------------------------------------------------
                                                                                  

consensus_2859#0      GCCGTCCTCCCCGTGGATCCCCACCGCCGGCGCTCCGCCGCCGCGGGCAGCGCCGGCCGT 120
consensus_2859#1      ------------------------------------------------------------
                                                                                  

consensus_2859#0      GGTCTACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAGGAGCAGGAGCAGGCGC 180
consensus_2859#1      ------------------------------------------------------------
                                                                                  

consensus_2859#0      TTCCAACGCGCAGGAGTCCAGGCCCCGCGTTTCTCCGGCGGAGAACTCTGAAGTGGAAAC 240
consensus_2859#1      ------------------------------------------------------------
                                                                                  

consensus_2859#0      CCGAGAGCATGAAGAGAAGGTCAACAAATATCAGGCTGTCCTTGCAGCTCGTTTGAAGGC 300
consensus_2859#1      ------------------------------------------------------------
                                                                                  

consensus_2859#0      CAAATACTTTTCTGGCAAGGCTTTTGGTAAAGGTACCAGTGCACTCCAATCTTATGACAA 360
consensus_2859#1      ------------------------------------------------------------
                                                                                  

consensus_2859#0      TAGTATGGCATGGCATATTATGGTTTACAGAAGATTTGCTTGTTTGTTCAGGCAGTCAGA 420
consensus_2859#1      ------------------------------------------------------------
                                                                                  

consensus_2859#0      TATCTGCCTGGTTAGATTATCTTTTTTTTTTTTTAAAAAAAACTTTGATATCTAATAGAT 480
consensus_2859#1      ------------------------------------------------------------
                                                                                  

consensus_2859#0      CATTTCCTGCATGTTAGCTTAGAAGAAAGCTCAACTGTATGGTTCAACAATTGACATGGA 540
consensus_2859#1      ------------------------------------------------------------
                                                                                  

consensus_2859#0      ATCTTCAAATG--GTCTGAGTCATGATCCACTAAATCAACAAACACAATTAGTCTGTGTC 598
consensus_2859#1      ---TCCAAATGCCGTCCTCCCCGTGGATCCCCA---CCGCCGGCGCTCCGCCGCCGCGGG 54
                         * ******  ***     * **   * * *   *  *   * *       * * *  

consensus_2859#0      ATGTTTTGGCCTTGAGATGCAACCTGTCATTACTAAAAGATATTTATATTATTGAATCCA 658
consensus_2859#1      CAGCGCCGGCCGTGGTCT---ACTCCTGGCTGTCGGAGCGCCACCCTGTCAAGGAGGCAG 111
                        *    **** **   *   **   *   *     *         * * *  **  *  

consensus_2859#0      AGATATGCTAAGTTGACTATCCTAACAATCATCTCGAAGAAATGCATTAATATGCCTTCC 718
consensus_2859#1      GAGCAGG---AGCAGGCGCTTCCAACG-------CGCAGGAGTCCAG----GCCCCGCGT 157
                          * *   **  * *  * * ***        ** ** * * **        **    

consensus_2859#0      TTACTTTGTAAGGATAGCCAGTGACCAGATGTGGTAGTAGAGTTTGCCTTTTTGTTTTCT 778
consensus_2859#1      TTCTCCGGCGGAGAACTCTGAAGTGGAAACCCGAGAGCATGAAGAGAA------------ 205
                      **     *    **   *    *   * *   *  ** *      *              

consensus_2859#0      TACTAATGAATTAACTTCAAGTGATAGTTTTTTTCCCCGTATTGACAATGATTTTTTTTT 838
consensus_2859#1      ----GGTCAACAAATATCAGGCTGT--CCTTGCAGCTCGTTTGAAGGCCAAATACTTTTC 259
                            * **  **  *** *   *    **    * *** *  *     * *  **** 

consensus_2859#0      TAACGTTTCACCATTTGGTGGACAGAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAG 898
consensus_2859#1      TGGCAA---GGCTTTTGGTAAA--GAAAATGTGTTTGAAGAAATGACTATCCAGTCTGAG 314
                      *  *       * ******  *  ************************************

consensus_2859#0      ACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGC 958
consensus_2859#1      ACCATTCTGTTAAGCAGGTGCCCGTTTTCAAGTTTATTTGCAGATCCAGCAAAATTTTGC 374
                      ************************************************************

consensus_2859#0      CGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCC 1018
consensus_2859#1      CGGGAGAAGAGCTGTACTAAAGAGGACATTTATCCATCTTTGACAAATGCCTCCTTTGCC 434
                      ************************************************************

consensus_2859#0      AAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTG 1078
consensus_2859#1      AAGCATAACCATTTATCTCTAGTTCGTGAAGACTCGTCGAAGTAATTAGCGGACAGTTTG 494
                      ************************************************************

consensus_2859#0      TCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGA 1138
consensus_2859#1      TCTGCAGAAAACTCTTAACACCTGCCAAGTGGCACCTGTCTATCAATACCACCTAATGGA 554
                      ************************************************************

consensus_2859#0      TGAGGGTTGGGTAGTTACATTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAA 1198
consensus_2859#1      TGAGGGTTGGGTAGTTACTTTATTAACTACATATGTTATCCTTAAACTAAATGAACTGAA 614
                      ****************** *****************************************

consensus_2859#0      ACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCT 1258
consensus_2859#1      ACATGTAAAATATCAACAGGCCTAATTTAACTTGAGAGTTTAGTTTCTTCTTGTAGGCCT 674
                      ************************************************************

consensus_2859#0      GTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATT 1318
consensus_2859#1      GTTGAGCATATAGATAGCTATGAACTTAACTCTATGCAAAACAATGCTCATATTGAGATT 734
                      ************************************************************

consensus_2859#0      ATTCCTCTAGGGGGATGTCTCCAACATTTTACCTGTCACCATAGTACTCAC 1369
consensus_2859#1      ATTCCTCTAGGGGGATGTCTCCAACAT------------------------ 761
                      ***************************