cluster # 2862

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Oryza sativa
cluster # 2862 cluster # 2862 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2862#0 length = 664 sequences # 1

consensus_2862#1 length = 510 sequences # 1

consensusID : consensus_2862#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [NGGACGAGACAAGGGGATGGAGTTGAAGTAGATCCCAATCTTGTGGCGAGAAGCAAAGGAAGTTGCATCATGATTTTGGGCATTGTTGGAGATGCCGATTGGATAGGCCGACGCTGCAGGTTTCTCTGACTGGTTTGAATCCTACTCGGGAAAAACTGACCTAACGAAGGTCTTGGTGGCGTTCGAGTGACCGAACAAGATGGAAGTGATCTTGAACCTCATCGACTGGTTAGAACCTAAGACGGAGAAGGAGAGTTTGCCGAAGTTGTCGGTGAGGAAGTCAAAGCAGCTGAATCGAAACGCTTACCCTGGGCGATAGACAAATCCAACGACTCATGAAGTTGAATCCATCGCTCTTGTTGATGAAACACTTGACACAACCCCTACACGCACGCCAGCTATGGATTTTTTTTGATTGGCAATAAATTTATGGGACTGTCTACAACTCAGTCGACAGAAAATAGGTGTTCCAATCTGTCGTATTTTGTAGCCACAAGATCTGAATCAAACAGCCTCAGATTTTTAACAACAAAAAATAAAAAAAAACATAGCAAGCTAAATCTGAAAGGCTATTCATGGCCCATTTCTTTTGAGCCCAAATCCAGTCGATACTATGAGGGCATAAATCCAAAACAAAGNCCAAATNCAAACCATGGCCCAAATA]

[+] EMBL CA764299             [NGGACGAGACAAGGGGATGGAGTTGAAGTAGATCCCAATCTTGTGGCGAGAAGCAAAGGAAGTTGCATCATGATTTTGGGCATTGTTGGAGATGCCGATTGGATAGGCCGACGCTGCAGGTTTCTCTGACTGGTTTGAATCCTACTCGGGAAAAACTGACCTAACGAAGGTCTTGGTGGCGTTCGAGTGACCGAACAAGATGGAAGTGATCTTGAACCTCATCGACTGGTTAGAACCTAAGACGGAGAAGGAGAGTTTGCCGAAGTTGTCGGTGAGGAAGTCAAAGCAGCTGAATCGAAACGCTTACCCTGGGCGATAGACAAATCCAACGACTCATGAAGTTGAATCCATCGCTCTTGTTGATGAAACACTTGACACAACCCCTACACGCACGCCAGCTATGGATTTTTTTTGATTGGCAATAAATTTATGGGACTGTCTACAACTCAGTCGACAGAAAATAGGTGTTCCAATCTGTCGTATTTTGTAGCCACAAGATCTGAATCAAACAGCCTCAGATTTTTAACAACAAAAAATAAAAAAAAACATAGCAAGCTAAATCTGAAAGGCTATTCATGGCCCATTTCTTTTGAGCCCAAATCCAGTCGATACTATGAGGGCATAAATCCAAAACAAAGNCCAAATNCAAACCATGGCCCAAATA]




>consensus_2862#0
NGGACGAGACAAGGGGATGGAGTTGAAGTAGATCCCAATCTTGTGGCGAGAAGCAAAGGA
AGTTGCATCATGATTTTGGGCATTGTTGGAGATGCCGATTGGATAGGCCGACGCTGCAGG
TTTCTCTGACTGGTTTGAATCCTACTCGGGAAAAACTGACCTAACGAAGGTCTTGGTGGC
GTTCGAGTGACCGAACAAGATGGAAGTGATCTTGAACCTCATCGACTGGTTAGAACCTAA
GACGGAGAAGGAGAGTTTGCCGAAGTTGTCGGTGAGGAAGTCAAAGCAGCTGAATCGAAA
CGCTTACCCTGGGCGATAGACAAATCCAACGACTCATGAAGTTGAATCCATCGCTCTTGT
TGATGAAACACTTGACACAACCCCTACACGCACGCCAGCTATGGATTTTTTTTGATTGGC
AATAAATTTATGGGACTGTCTACAACTCAGTCGACAGAAAATAGGTGTTCCAATCTGTCG
TATTTTGTAGCCACAAGATCTGAATCAAACAGCCTCAGATTTTTAACAACAAAAAATAAA
AAAAAACATAGCAAGCTAAATCTGAAAGGCTATTCATGGCCCATTTCTTTTGAGCCCAAA
TCCAGTCGATACTATGAGGGCATAAATCCAAAACAAAGNCCAAATNCAAACCATGGCCCA
AATA

consensusID : consensus_2862#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence

                              [TTTTTGACGGTAAAATTTGGTACTTAACTATCATCAATAGTCGTCTGGGTATTCGAAACTGTAGACAGTTTCTAAGCTGGTACAGGTATCACTGATTGGGCATGTATTCAGACATGGTTGAACCATGACTGAGTCTAACCTGAGGGGATGGAGTTGAAGTAGATCCCAATCTTGTGGCGAGAAGCAAAGGAAGTTGCATCATGATTTTGGGCATTGTTGGAGATGCCGATTGGATAGGCCGACGCTGCAGGTTTCTCTGACTGGTTTGAATCCTACTCGGGAAAAACTGGCCTAACGAAGGTCTTGGTGGCGTTCGAGTGACCGAACAAGATGGAAGTGATCTTGAACCTCATCGACTGGTTAGAACCCTGGGCGATAGACAAATCCAATGACTCGTGAAGTTGAATCCATCGCTCTTGTTGATGAAACACTTGACACAACCCCTACACGCACGCCAGCTATGGATTTTTTTTGATTGGCAATAATTTTATGGGACTGTCTACAACTCAG]

[+] EMBL CF308630             [TTTTTGACGGTAAAATTTGGTACTTAACTATCATCAATAGTCGTCTGGGTATTCGAAACTGTAGACAGTTTCTAAGCTGGTACAGGTATCACTGATTGGGCATGTATTCAGACATGGTTGAACCATGACTGAGTCTAACCTGAGGGGATGGAGTTGAAGTAGATCCCAATCTTGTGGCGAGAAGCAAAGGAAGTTGCATCATGATTTTGGGCATTGTTGGAGATGCCGATTGGATAGGCCGACGCTGCAGGTTTCTCTGACTGGTTTGAATCCTACTCGGGAAAAACTGGCCTAACGAAGGTCTTGGTGGCGTTCGAGTGACCGAACAAGATGGAAGTGATCTTGAACCTCATCGACTGGTTAGAACCCTGGGCGATAGACAAATCCAATGACTCGTGAAGTTGAATCCATCGCTCTTGTTGATGAAACACTTGACACAACCCCTACACGCACGCCAGCTATGGATTTTTTTTGATTGGCAATAATTTTATGGGACTGTCTACAACTCAG]




>consensus_2862#1
TTTTTGACGGTAAAATTTGGTACTTAACTATCATCAATAGTCGTCTGGGTATTCGAAACT
GTAGACAGTTTCTAAGCTGGTACAGGTATCACTGATTGGGCATGTATTCAGACATGGTTG
AACCATGACTGAGTCTAACCTGAGGGGATGGAGTTGAAGTAGATCCCAATCTTGTGGCGA
GAAGCAAAGGAAGTTGCATCATGATTTTGGGCATTGTTGGAGATGCCGATTGGATAGGCC
GACGCTGCAGGTTTCTCTGACTGGTTTGAATCCTACTCGGGAAAAACTGGCCTAACGAAG
GTCTTGGTGGCGTTCGAGTGACCGAACAAGATGGAAGTGATCTTGAACCTCATCGACTGG
TTAGAACCCTGGGCGATAGACAAATCCAATGACTCGTGAAGTTGAATCCATCGCTCTTGT
TGATGAAACACTTGACACAACCCCTACACGCACGCCAGCTATGGATTTTTTTTGATTGGC
AATAATTTTATGGGACTGTCTACAACTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2862#0      ------------------------------------------------------------
consensus_2862#1      TTTTTGACGGTAAAATTTGGTACTTAACTATCATCAATAGTCGTCTGGGTATTCGAAACT 60
                                                                                  

consensus_2862#0      ------------------------------------------------------------
consensus_2862#1      GTAGACAGTTTCTAAGCTGGTACAGGTATCACTGATTGGGCATGTATTCAGACATGGTTG 120
                                                                                  

consensus_2862#0      -----------NGGACGAGACAAGGGGATGGAGTTGAAGTAGATCCCAATCTTGTGGCGA 49
consensus_2862#1      AACCATGACTGAGTCTAACCTGAGGGGATGGAGTTGAAGTAGATCCCAATCTTGTGGCGA 180
                                  *    *    **************************************

consensus_2862#0      GAAGCAAAGGAAGTTGCATCATGATTTTGGGCATTGTTGGAGATGCCGATTGGATAGGCC 109
consensus_2862#1      GAAGCAAAGGAAGTTGCATCATGATTTTGGGCATTGTTGGAGATGCCGATTGGATAGGCC 240
                      ************************************************************

consensus_2862#0      GACGCTGCAGGTTTCTCTGACTGGTTTGAATCCTACTCGGGAAAAACTGACCTAACGAAG 169
consensus_2862#1      GACGCTGCAGGTTTCTCTGACTGGTTTGAATCCTACTCGGGAAAAACTGGCCTAACGAAG 300
                      ************************************************* **********

consensus_2862#0      GTCTTGGTGGCGTTCGAGTGACCGAACAAGATGGAAGTGATCTTGAACCTCATCGACTGG 229
consensus_2862#1      GTCTTGGTGGCGTTCGAGTGACCGAACAAGATGGAAGTGATCTTGAACCTCATCGACTGG 360
                      ************************************************************

consensus_2862#0      TTAGAACCTAAGACGGAGAAGGAGAGTTTGCCGAAGTTGTCGGTGAGGAAGTCAAAGCAG 289
consensus_2862#1      TTAGAACC---------------------------------------------------- 368
                      ********                                                    

consensus_2862#0      CTGAATCGAAACGCTTACCCTGGGCGATAGACAAATCCAACGACTCATGAAGTTGAATCC 349
consensus_2862#1      -------------------CTGGGCGATAGACAAATCCAATGACTCGTGAAGTTGAATCC 409
                                         ********************* ***** *************

consensus_2862#0      ATCGCTCTTGTTGATGAAACACTTGACACAACCCCTACACGCACGCCAGCTATGGATTTT 409
consensus_2862#1      ATCGCTCTTGTTGATGAAACACTTGACACAACCCCTACACGCACGCCAGCTATGGATTTT 469
                      ************************************************************

consensus_2862#0      TTTTGATTGGCAATAAATTTATGGGACTGTCTACAACTCAGTCGACAGAAAATAGGTGTT 469
consensus_2862#1      TTTTGATTGGCAATAATTTTATGGGACTGTCTACAACTCAG------------------- 510
                      **************** ************************                   

consensus_2862#0      CCAATCTGTCGTATTTTGTAGCCACAAGATCTGAATCAAACAGCCTCAGATTTTTAACAA 529
consensus_2862#1      ------------------------------------------------------------
                                                                                  

consensus_2862#0      CAAAAAATAAAAAAAAACATAGCAAGCTAAATCTGAAAGGCTATTCATGGCCCATTTCTT 589
consensus_2862#1      ------------------------------------------------------------
                                                                                  

consensus_2862#0      TTGAGCCCAAATCCAGTCGATACTATGAGGGCATAAATCCAAAACAAAGNCCAAATNCAA 649
consensus_2862#1      ------------------------------------------------------------
                                                                                  

consensus_2862#0      ACCATGGCCCAAATA 664
consensus_2862#1      ---------------