These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [GGACGGACAAGGGGGAGAGCAGCCCCAAAAATAAATCTAGAGTATTATGCCCTCCTCACTGCTAGATCCAGGGCGAGTGGGCAACACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCTCATGGCGGCGGGGCAACTTGGAAAAAGCAAGGTCATCGGGAACTGGGAGGATAAGGCCCAACGTGTGCTCCTCAGCCTCCTCCTTCAATGTGCGTTGTCGATGGTGATGAAGGGGCAACGTGATGGTGAGCCATCATGCTCCTCACCCGATTGTGTGCAGGAATGCTTTGAATGCGTGAAGCATCTGTGAGATTCAGCTCTGCTTGATCGGATTCTAGGGTAACAATGAACAATATCTGCACAACATTGGAGGAACAAACAACAAGCAGTGTCTCTCGTTCAATGTAGTGTTTTGGAGTAAGACATTAAACATTTAAATTGTTCCGTAGAAATAGTGAGAGGGGTTGGGGG] [+] EMBL CB097113 [GGACGGACAAGGGGGAGAGCAGCCCCAAAAATAAATCTAGAGTATTATGCCCTCCTCACTGCTAGATCCAGGGCGAGTGGGCAACACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCTCATGGCGGCGGGGCAACTTGGAAAAAGCAAGGTCATCGGGAACTGGGAGGATAAGGCCCAACGTGTGCTCCTCAGCCTCCTCCTTCAATGTGCGTTGTCGATGGTGATGAAGGGGCAACGTGATGGTGAGCCATCATGCTCCTCACCCGATTGTGTGCAGGAATGCTTTGAATGCGTGAAGCATCTGTGAGATTCAGCTCTGCTTGATCGGATTCTAGGGTAACAATGAACAATATCTGCACAACATTGGAGGAACAAACAACAAGCAGTGTCTCTCGTTCAATGTAGTGTTTTGGAGTAAGACATTAAACATTTAAATTGTTCCGTAGAAATAGTGAGAGGGGTTGGGGG] consensusID : consensus_2863#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence [ACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCNCATGGCGGCGGGGNCAACTTGGAAAAAGCAAGGNCCATCGGGGAACTGGGAAGGNTTAAGGGCCCCANNCGNGTGCCTCCTNAGGACTTCCNTCCTT] [+] EMBL CA764301 [ACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCNCATGGCGGCGGGGNCAACTTGGAAAAAGCAAGGNCCATCGGGGAACTGGGAAGGNTTAAGGGCCCCANNCGNGTGCCTCCTNAGGACTTCCNTCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2863#0 GGACGGACAAGGGGGAGAGCAGCCCCAAAAATAAATCTAGAGTATTATGCCCTCCTCACT 60 consensus_2863#1 ------------------------------------------------------------ consensus_2863#0 GCTAGATCCAGGGCGAGTGGGCAACACCAATCTCATAGCCTCCTCTGTCTCATGGCCACC 120 consensus_2863#1 -------------------------ACCAATCTCATAGCCTCCTCTGTCTCATGGCCACC 35 *********************************** consensus_2863#0 TCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCTCATGGCGGC 180 consensus_2863#1 TCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCNCATGGCGGC 95 ************************************************** ********* consensus_2863#0 GGGGC-AACTTGGAAAAAGCAAGGTC-ATCGGG-AACTGGGAGGAT---AAGGCCC--AA 232 consensus_2863#1 GGGGNCAACTTGGAAAAAGCAAGGNCCATCGGGGAACTGGGAAGGNTTAAGGGCCCCANN 155 **** ****************** * ****** ******** * * ***** consensus_2863#0 CGTGTGCTCCTCAGCCTCCTCCTTCAATGTGCGTTGTCGATGGTGATGAAGGGGCAACGT 292 consensus_2863#1 CGNGTGCCTCCTNAGGACTTCCNTCCTT-------------------------------- 183 ** **** * * *** ** * consensus_2863#0 GATGGTGAGCCATCATGCTCCTCACCCGATTGTGTGCAGGAATGCTTTGAATGCGTGAAG 352 consensus_2863#1 ------------------------------------------------------------ consensus_2863#0 CATCTGTGAGATTCAGCTCTGCTTGATCGGATTCTAGGGTAACAATGAACAATATCTGCA 412 consensus_2863#1 ------------------------------------------------------------ consensus_2863#0 CAACATTGGAGGAACAAACAACAAGCAGTGTCTCTCGTTCAATGTAGTGTTTTGGAGTAA 472 consensus_2863#1 ------------------------------------------------------------ consensus_2863#0 GACATTAAACATTTAAATTGTTCCGTAGAAATAGTGAGAGGGGTTGGGGG 522 consensus_2863#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||