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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2863 cluster # 2863       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2863#0 length = 522 sequences # 1  
consensus_2863#1 length = 183 sequences # 1  

consensusID : consensus_2863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence
                              [GGACGGACAAGGGGGAGAGCAGCCCCAAAAATAAATCTAGAGTATTATGCCCTCCTCACTGCTAGATCCAGGGCGAGTGGGCAACACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCTCATGGCGGCGGGGCAACTTGGAAAAAGCAAGGTCATCGGGAACTGGGAGGATAAGGCCCAACGTGTGCTCCTCAGCCTCCTCCTTCAATGTGCGTTGTCGATGGTGATGAAGGGGCAACGTGATGGTGAGCCATCATGCTCCTCACCCGATTGTGTGCAGGAATGCTTTGAATGCGTGAAGCATCTGTGAGATTCAGCTCTGCTTGATCGGATTCTAGGGTAACAATGAACAATATCTGCACAACATTGGAGGAACAAACAACAAGCAGTGTCTCTCGTTCAATGTAGTGTTTTGGAGTAAGACATTAAACATTTAAATTGTTCCGTAGAAATAGTGAGAGGGGTTGGGGG]

[+] EMBL CB097113             [GGACGGACAAGGGGGAGAGCAGCCCCAAAAATAAATCTAGAGTATTATGCCCTCCTCACTGCTAGATCCAGGGCGAGTGGGCAACACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCTCATGGCGGCGGGGCAACTTGGAAAAAGCAAGGTCATCGGGAACTGGGAGGATAAGGCCCAACGTGTGCTCCTCAGCCTCCTCCTTCAATGTGCGTTGTCGATGGTGATGAAGGGGCAACGTGATGGTGAGCCATCATGCTCCTCACCCGATTGTGTGCAGGAATGCTTTGAATGCGTGAAGCATCTGTGAGATTCAGCTCTGCTTGATCGGATTCTAGGGTAACAATGAACAATATCTGCACAACATTGGAGGAACAAACAACAAGCAGTGTCTCTCGTTCAATGTAGTGTTTTGGAGTAAGACATTAAACATTTAAATTGTTCCGTAGAAATAGTGAGAGGGGTTGGGGG]


>consensus_2863#0 GGACGGACAAGGGGGAGAGCAGCCCCAAAAATAAATCTAGAGTATTATGCCCTCCTCACT GCTAGATCCAGGGCGAGTGGGCAACACCAATCTCATAGCCTCCTCTGTCTCATGGCCACC TCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCTCATGGCGGC GGGGCAACTTGGAAAAAGCAAGGTCATCGGGAACTGGGAGGATAAGGCCCAACGTGTGCT CCTCAGCCTCCTCCTTCAATGTGCGTTGTCGATGGTGATGAAGGGGCAACGTGATGGTGA GCCATCATGCTCCTCACCCGATTGTGTGCAGGAATGCTTTGAATGCGTGAAGCATCTGTG AGATTCAGCTCTGCTTGATCGGATTCTAGGGTAACAATGAACAATATCTGCACAACATTG GAGGAACAAACAACAAGCAGTGTCTCTCGTTCAATGTAGTGTTTTGGAGTAAGACATTAA ACATTTAAATTGTTCCGTAGAAATAGTGAGAGGGGTTGGGGG



consensusID : consensus_2863#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence
                              [ACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCNCATGGCGGCGGGGNCAACTTGGAAAAAGCAAGGNCCATCGGGGAACTGGGAAGGNTTAAGGGCCCCANNCGNGTGCCTCCTNAGGACTTCCNTCCTT]

[+] EMBL CA764301             [ACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCNCATGGCGGCGGGGNCAACTTGGAAAAAGCAAGGNCCATCGGGGAACTGGGAAGGNTTAAGGGCCCCANNCGNGTGCCTCCTNAGGACTTCCNTCCTT]


>consensus_2863#1 ACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCA TGGTGACACCCACTGGATCTAGCTCNCATGGCGGCGGGGNCAACTTGGAAAAAGCAAGGN CCATCGGGGAACTGGGAAGGNTTAAGGGCCCCANNCGNGTGCCTCCTNAGGACTTCCNTC CTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2863#0      GGACGGACAAGGGGGAGAGCAGCCCCAAAAATAAATCTAGAGTATTATGCCCTCCTCACT 60
consensus_2863#1      ------------------------------------------------------------
                                                                                  

consensus_2863#0      GCTAGATCCAGGGCGAGTGGGCAACACCAATCTCATAGCCTCCTCTGTCTCATGGCCACC 120
consensus_2863#1      -------------------------ACCAATCTCATAGCCTCCTCTGTCTCATGGCCACC 35
                                               ***********************************

consensus_2863#0      TCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCTCATGGCGGC 180
consensus_2863#1      TCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCNCATGGCGGC 95
                      ************************************************** *********

consensus_2863#0      GGGGC-AACTTGGAAAAAGCAAGGTC-ATCGGG-AACTGGGAGGAT---AAGGCCC--AA 232
consensus_2863#1      GGGGNCAACTTGGAAAAAGCAAGGNCCATCGGGGAACTGGGAAGGNTTAAGGGCCCCANN 155
                      ****  ****************** * ****** ******** *     * *****    

consensus_2863#0      CGTGTGCTCCTCAGCCTCCTCCTTCAATGTGCGTTGTCGATGGTGATGAAGGGGCAACGT 292
consensus_2863#1      CGNGTGCCTCCTNAGGACTTCCNTCCTT-------------------------------- 183
                      ** ****  *       * *** **  *                                

consensus_2863#0      GATGGTGAGCCATCATGCTCCTCACCCGATTGTGTGCAGGAATGCTTTGAATGCGTGAAG 352
consensus_2863#1      ------------------------------------------------------------
                                                                                  

consensus_2863#0      CATCTGTGAGATTCAGCTCTGCTTGATCGGATTCTAGGGTAACAATGAACAATATCTGCA 412
consensus_2863#1      ------------------------------------------------------------
                                                                                  

consensus_2863#0      CAACATTGGAGGAACAAACAACAAGCAGTGTCTCTCGTTCAATGTAGTGTTTTGGAGTAA 472
consensus_2863#1      ------------------------------------------------------------
                                                                                  

consensus_2863#0      GACATTAAACATTTAAATTGTTCCGTAGAAATAGTGAGAGGGGTTGGGGG 522
consensus_2863#1      --------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)