cluster # 2866

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Oryza sativa
cluster # 2866 cluster # 2866 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2866#0 length = 1193 sequences # 1

consensus_2866#1 length = 248 sequences # 1

consensusID : consensus_2866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1193
fasta sequence

                              [TTATTGGAAATCTTGGCGCATCTGTCACTGAAGTTGTAAGTGATGCTGTTGTCACAGAGTTCAGTAGAACGCAGAAGGCCGGTGTACTACAATCTTACGCGTTCATAATTCTGGCAGCTGGATCTCTCTTAGGAAATTTGTCTGGTGGTTACGTTCTGTTGAGAACACAGGAACCAAAGACTATGTTCTCAGCATTCTCCATCCTCCTTGGCCTCCAACTAGCACTTTCCTTAAGTACAAAAGAGACGCTTCCAAGCTCTCATAGAAACTGGAACATTTGTCATGTCAGAACCTCTCTGTCTGACAATCTCCGCAAACAATTCTCAAACTTGAGGACAGCAATCAGCGAGGAGCAGATCTTTTACCCTCTTATGTGGATAATGACATCATTTGCAGTTGTGCCTATTCTCTCTGGGACAATGTTTTGTTTTCAAACACAGTATCTGAAGCTTGATCCATCAGTCATCGGCCTATCAAAAGTTGTTGGGCAGGTGATGGTTCTATCTCTAACTGTCCTCTACAATAAGTATCTCAAAAAGATCCCTTTGAGGCGGCTTGTGGCTGGAGTTCAGACGATGTATGCTTTGGCAGTTCTATCAGACTTGGTCCTGGTGAAACAAGTGAACCTTATGTTGGGGATACCGAATGAGATCCATGTGCTTTGTTTCTCGGCTCTAGCAGAAGCAATTGCTCAATTCAAGGTCTTGCCATTCTCAGTTCTGTTGTCAAGCCAATGCCCACCTGGCTGTGAAGGTTCGCTTTTCGCTTTCTTCACATCTGGACTGGTGTTTTCAGCAATAGTAAGCGGAGTATTTGGAGTTGGGTTGTCCAGTTTAATTGGGGTGTCTGGTGGGGATTACACAAGCTTCCCTTTGTGTATTTTGCTGCAAAGTTTGGCAGCATTGGTACCTTTGGGATGGATATCCTTTCTACCTGAAAAATGGACTGCCGACGACAAGATTCTTAAACCAAGATGAGGCAACCCTGTAGGGTCAATAGGTAAACCACACAACCTCGAGATGTTAGTAGGTAATGACAGTGTAGAGGGTTACATGTATAGATACGAAGATGTCATTTTTCTTTGGAATCAATAGTTCTAGTTCTAACGTTCCAGCTGAATATTGGCATCAAATTGTATTCTCTTGCTTCCAAGAGCATTGTGTTCAGCTTATCATGCCTGAAGAATGGGAAGA]

[+] EMBL AK108531             [TTATTGGAAATCTTGGCGCATCTGTCACTGAAGTTGTAAGTGATGCTGTTGTCACAGAGTTCAGTAGAACGCAGAAGGCCGGTGTACTACAATCTTACGCGTTCATAATTCTGGCAGCTGGATCTCTCTTAGGAAATTTGTCTGGTGGTTACGTTCTGTTGAGAACACAGGAACCAAAGACTATGTTCTCAGCATTCTCCATCCTCCTTGGCCTCCAACTAGCACTTTCCTTAAGTACAAAAGAGACGCTTCCAAGCTCTCATAGAAACTGGAACATTTGTCATGTCAGAACCTCTCTGTCTGACAATCTCCGCAAACAATTCTCAAACTTGAGGACAGCAATCAGCGAGGAGCAGATCTTTTACCCTCTTATGTGGATAATGACATCATTTGCAGTTGTGCCTATTCTCTCTGGGACAATGTTTTGTTTTCAAACACAGTATCTGAAGCTTGATCCATCAGTCATCGGCCTATCAAAAGTTGTTGGGCAGGTGATGGTTCTATCTCTAACTGTCCTCTACAATAAGTATCTCAAAAAGATCCCTTTGAGGCGGCTTGTGGCTGGAGTTCAGACGATGTATGCTTTGGCAGTTCTATCAGACTTGGTCCTGGTGAAACAAGTGAACCTTATGTTGGGGATACCGAATGAGATCCATGTGCTTTGTTTCTCGGCTCTAGCAGAAGCAATTGCTCAATTCAAGGTCTTGCCATTCTCAGTTCTGTTGTCAAGCCAATGCCCACCTGGCTGTGAAGGTTCGCTTTTCGCTTTCTTCACATCTGGACTGGTGTTTTCAGCAATAGTAAGCGGAGTATTTGGAGTTGGGTTGTCCAGTTTAATTGGGGTGTCTGGTGGGGATTACACAAGCTTCCCTTTGTGTATTTTGCTGCAAAGTTTGGCAGCATTGGTACCTTTGGGATGGATATCCTTTCTACCTGAAAAATGGACTGCCGACGACAAGATTCTTAAACCAAGATGAGGCAACCCTGTAGGGTCAATAGGTAAACCACACAACCTCGAGATGTTAGTAGGTAATGACAGTGTAGAGGGTTACATGTATAGATACGAAGATGTCATTTTTCTTTGGAATCAATAGTTCTAGTTCTAACGTTCCAGCTGAATATTGGCATCAAATTGTATTCTCTTGCTTCCAAGAGCATTGTGTTCAGCTTATCATGCCTGAAGAATGGGAAGA]




>consensus_2866#0
TTATTGGAAATCTTGGCGCATCTGTCACTGAAGTTGTAAGTGATGCTGTTGTCACAGAGT
TCAGTAGAACGCAGAAGGCCGGTGTACTACAATCTTACGCGTTCATAATTCTGGCAGCTG
GATCTCTCTTAGGAAATTTGTCTGGTGGTTACGTTCTGTTGAGAACACAGGAACCAAAGA
CTATGTTCTCAGCATTCTCCATCCTCCTTGGCCTCCAACTAGCACTTTCCTTAAGTACAA
AAGAGACGCTTCCAAGCTCTCATAGAAACTGGAACATTTGTCATGTCAGAACCTCTCTGT
CTGACAATCTCCGCAAACAATTCTCAAACTTGAGGACAGCAATCAGCGAGGAGCAGATCT
TTTACCCTCTTATGTGGATAATGACATCATTTGCAGTTGTGCCTATTCTCTCTGGGACAA
TGTTTTGTTTTCAAACACAGTATCTGAAGCTTGATCCATCAGTCATCGGCCTATCAAAAG
TTGTTGGGCAGGTGATGGTTCTATCTCTAACTGTCCTCTACAATAAGTATCTCAAAAAGA
TCCCTTTGAGGCGGCTTGTGGCTGGAGTTCAGACGATGTATGCTTTGGCAGTTCTATCAG
ACTTGGTCCTGGTGAAACAAGTGAACCTTATGTTGGGGATACCGAATGAGATCCATGTGC
TTTGTTTCTCGGCTCTAGCAGAAGCAATTGCTCAATTCAAGGTCTTGCCATTCTCAGTTC
TGTTGTCAAGCCAATGCCCACCTGGCTGTGAAGGTTCGCTTTTCGCTTTCTTCACATCTG
GACTGGTGTTTTCAGCAATAGTAAGCGGAGTATTTGGAGTTGGGTTGTCCAGTTTAATTG
GGGTGTCTGGTGGGGATTACACAAGCTTCCCTTTGTGTATTTTGCTGCAAAGTTTGGCAG
CATTGGTACCTTTGGGATGGATATCCTTTCTACCTGAAAAATGGACTGCCGACGACAAGA
TTCTTAAACCAAGATGAGGCAACCCTGTAGGGTCAATAGGTAAACCACACAACCTCGAGA
TGTTAGTAGGTAATGACAGTGTAGAGGGTTACATGTATAGATACGAAGATGTCATTTTTC
TTTGGAATCAATAGTTCTAGTTCTAACGTTCCAGCTGAATATTGGCATCAAATTGTATTC
TCTTGCTTCCAAGAGCATTGTGTTCAGCTTATCATGCCTGAAGAATGGGAAGA

consensusID : consensus_2866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence

                              [NGGACGAGACAAGGGGGGGTTACATGTATAGATACGAAGATGTCATTTTTCTTTGGAATCAATAGTTCTAGTTCTAACGTTCCAGCTGAATATTGGCATCAAATTGTATTCTCTTGCTTCCAAGAGCATTGTGTTCAGCTTATCATGCCTGAAGAATGGGAAGAATACTTCAGGAAGAATGTGGTCTTGTTTCACAATGTAAATTTCAAATTAAAGATGAAAACTAAGAAAGATACATCTAAATTTAG]

[+] EMBL CA764316             [NGGACGAGACAAGGGGGGGTTACATGTATAGATACGAAGATGTCATTTTTCTTTGGAATCAATAGTTCTAGTTCTAACGTTCCAGCTGAATATTGGCATCAAATTGTATTCTCTTGCTTCCAAGAGCATTGTGTTCAGCTTATCATGCCTGAAGAATGGGAAGAATACTTCAGGAAGAATGTGGTCTTGTTTCACAATGTAAATTTCAAATTAAAGATGAAAACTAAGAAAGATACATCTAAATTTAG]




>consensus_2866#1
NGGACGAGACAAGGGGGGGTTACATGTATAGATACGAAGATGTCATTTTTCTTTGGAATC
AATAGTTCTAGTTCTAACGTTCCAGCTGAATATTGGCATCAAATTGTATTCTCTTGCTTC
CAAGAGCATTGTGTTCAGCTTATCATGCCTGAAGAATGGGAAGAATACTTCAGGAAGAAT
GTGGTCTTGTTTCACAATGTAAATTTCAAATTAAAGATGAAAACTAAGAAAGATACATCT
AAATTTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2866#0      TTATTGGAAATCTTGGCGCATCTGTCACTGAAGTTGTAAGTGATGCTGTTGTCACAGAGT 60
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      TCAGTAGAACGCAGAAGGCCGGTGTACTACAATCTTACGCGTTCATAATTCTGGCAGCTG 120
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      GATCTCTCTTAGGAAATTTGTCTGGTGGTTACGTTCTGTTGAGAACACAGGAACCAAAGA 180
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      CTATGTTCTCAGCATTCTCCATCCTCCTTGGCCTCCAACTAGCACTTTCCTTAAGTACAA 240
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      AAGAGACGCTTCCAAGCTCTCATAGAAACTGGAACATTTGTCATGTCAGAACCTCTCTGT 300
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      CTGACAATCTCCGCAAACAATTCTCAAACTTGAGGACAGCAATCAGCGAGGAGCAGATCT 360
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      TTTACCCTCTTATGTGGATAATGACATCATTTGCAGTTGTGCCTATTCTCTCTGGGACAA 420
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      TGTTTTGTTTTCAAACACAGTATCTGAAGCTTGATCCATCAGTCATCGGCCTATCAAAAG 480
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      TTGTTGGGCAGGTGATGGTTCTATCTCTAACTGTCCTCTACAATAAGTATCTCAAAAAGA 540
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      TCCCTTTGAGGCGGCTTGTGGCTGGAGTTCAGACGATGTATGCTTTGGCAGTTCTATCAG 600
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      ACTTGGTCCTGGTGAAACAAGTGAACCTTATGTTGGGGATACCGAATGAGATCCATGTGC 660
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      TTTGTTTCTCGGCTCTAGCAGAAGCAATTGCTCAATTCAAGGTCTTGCCATTCTCAGTTC 720
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      TGTTGTCAAGCCAATGCCCACCTGGCTGTGAAGGTTCGCTTTTCGCTTTCTTCACATCTG 780
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      GACTGGTGTTTTCAGCAATAGTAAGCGGAGTATTTGGAGTTGGGTTGTCCAGTTTAATTG 840
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      GGGTGTCTGGTGGGGATTACACAAGCTTCCCTTTGTGTATTTTGCTGCAAAGTTTGGCAG 900
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      CATTGGTACCTTTGGGATGGATATCCTTTCTACCTGAAAAATGGACTGCCGACGACAAGA 960
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      TTCTTAAACCAAGATGAGGCAACCCTGTAGGGTCAATAGGTAAACCACACAACCTCGAGA 1020
consensus_2866#1      ------------------------------------------------------------
                                                                                  

consensus_2866#0      TGTTAGTAGGTAATGACAGTGTAGAGGGTTACATGTATAGATACGAAGATGTCATTTTTC 1080
consensus_2866#1      ---------NGGACGAGACAAGGGGGGGTTACATGTATAGATACGAAGATGTCATTTTTC 51
                                  * ** *     * ***********************************

consensus_2866#0      TTTGGAATCAATAGTTCTAGTTCTAACGTTCCAGCTGAATATTGGCATCAAATTGTATTC 1140
consensus_2866#1      TTTGGAATCAATAGTTCTAGTTCTAACGTTCCAGCTGAATATTGGCATCAAATTGTATTC 111
                      ************************************************************

consensus_2866#0      TCTTGCTTCCAAGAGCATTGTGTTCAGCTTATCATGCCTGAAGAATGGGAAGA------- 1193
consensus_2866#1      TCTTGCTTCCAAGAGCATTGTGTTCAGCTTATCATGCCTGAAGAATGGGAAGAATACTTC 171
                      *****************************************************       

consensus_2866#0      ------------------------------------------------------------
consensus_2866#1      AGGAAGAATGTGGTCTTGTTTCACAATGTAAATTTCAAATTAAAGATGAAAACTAAGAAA 231
                                                                                  

consensus_2866#0      -----------------
consensus_2866#1      GATACATCTAAATTTAG 248