These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2262 fasta sequence [GGTTCTCAAAAAAAAAGTGAAAGACAGAGAGGTCGGAGAAGGGAAAAGTGGCGATGAAACAAGGGAAAGTGGAGATGACGCCGGCGGTCGCCGCCGCGGCGGTTCTGCCGGTGGGGTTCCGTTTCCGGCCGACGGACGAGGAGCTGGTGAGGCACTATCTGAAGGGAAAGATCGCTGGGCGGAGCCACCCTGACCTCCTCCTCATCCCGGACGTGGACCTCTCCACCTGCGAGCCCTGGGATCTCCCGGCCATGTCCGTTATCAAGTCCGACGACCCCGAGTGGTTCTTCTTCGCCCCCCGCGACCGCAAGTATCCCGGCGGCCACCGCTCCAACCGCTCCACCGCCGCCGGCTACTGGAAGGCCACCGGCAAGGACCGCCTCATCCGCTCCCGCCCCGCCGGCCCCCTCATCGGCATCAAGAAGACCCTCGTCTTCCACCGCGGCAGAGCTCCGCGGGGCCTCCGCACCGCCTGGATCATGCACGAGTACCGCACCACTGAGCCTCACTTCCAATCAGGCAAAAACGGTAGCTTCGTTCTGTATCGCCTGTTTAACAAGCACGAACAAGATGATACCCATACCCCGGCCTCCAATTTGGACCAACAATTGTCCACGTCTTCTCAAGGCAATCCCCAAAATGGCACACCTGCTGTCCAACCGGCCCTCGCCTCAATAATGAAGGATCATCAGACCTTACCATCATCTGGTTTCAGCCAACTGACTGAAATACAAGATGCTAGTACATCTGTCCATGACAAAGAGCAAACTGTAGCCCATGACGATGCTTTTCTGGACGTGTTATCTCAACTTCCAGACCTAGAGCCTGAGCAAAGATACAATGGATTCCCTAATATCACCTCTCCAATTCGCCCTTACAGCGATCACCCTTTTGTCGGCAATCTGGGTGAGCAAGATCTTTCAGCGCATTTTGGCAGTACCTTGTCTGAGCAGGACCTGCAAAGTTTGTTGTTTAGTCCAAATTACACCAAAATGGATAAGCACCCCACTGGAAACGTAGAGTCTAATCCTACCGCGTCGTCCAACAATCCAAACAATAACACATTACTCATGGATAGTTGGAGGAAGAATGATTCATATCAGATGCTTCTAATTCAGGTTAGAATATTCTAGAATTTACTCTTACACATTTTGACTAATCTCATGAGAACATTTTCTTCCCTTCTATTTCCTGTTCTAAACAAAGCGTGCAGACAACACAGATGCTACTTGCTGTTCTTCTTCAATCAATGCACCACAAACAGAAACAAGTGATGCTAATCTTGAAGCAAGAGCCCAGAGTAGCAGCATGGTCTACAGTGGAGTAGCCGAGGGCTCCCCCTTGTGCAACCAAGATCAACTACACTCCGCATTCAATCCTCACATGGAGTCACAAAAGAGTGGAGCCTTCTGTTGGGCTGGATTGTGGACCCCTTATCCCCAGCATTGGTTCGATACTATCGTAGAACCGGGCAGGAGTGGCATGACATTTTCAGATGCCTTGAAAGAACAAGGTCAGGAACAGGCACCTTCAATGAAGCACTTGACAGCTCAAGATCTCGTTGATCCACAACAAGGAACTGCTGCAAGAAGGATCCGCCTTGTATGCTCTGTTGAGAGGGCATCAGTCTCTCAACCTGTATCCTCACATTTGCAGAGTGAATATGAAGCTGGATCATGCTGTAACACTCGCAATTCATCTAATAACAAGAAGGAAAGTGTCAGGAGTGAAGATGAAGCTGGATCATGTTGTAACACTGGAAGTTCATCTAATAACCACAGCGAGGAAAATGACGATGCAGCCTCCCAGATTATGGATGGAGAACCAATGCATATTCAGTGCAAAGAGGATACCCCTATTCAAGTGGATCATTCAGCGGAAGTTATGGACAAGCTCCAAGGCTTCTCCTTTCATGAAGAGATGTTGGTACATGCTAATCAGCCCCGTGGAACTAATCTAAAGCAGAGGCTGTTGAGAGTGGAGTCTAGAAATAGCAATGAGAATAATGTACCTTCGTTGGAGACACGAGAACAGCAGCATGCACCTCATATTCAGAAATGGACTAGCTCTGTTGTGCGACTAGGGTGGGGGTGGCAGTGGCCGGCTCTCTTTGTGATGGCCGGCTCTCTGCTTTTGTTGGTTGGTGTGTGGAAATCTCTGAATCACACTACCTGACTAATGTAAATAAATGGTCGCTTAGCTTAAGCTTGGGAGCCTCATATATACTACTACATATGTTCTTTGGAAAGTACTGCAGGTAAC] [+] EMBL AK064178 [GGTTCTCAAAAAAAAAGTGAAAGACAGAGAGGTCGGAGAAGGGAAAAGTGGCGATGAAACAAGGGAAAGTGGAGATGACGCCGGCGGTCGCCGCCGCGGCGGTTCTGCCGGTGGGGTTCCGTTTCCGGCCGACGGACGAGGAGCTGGTGAGGCACTATCTGAAGGGAAAGATCGCTGGGCGGAGCCACCCTGACCTCCTCCTCATCCCGGACGTGGACCTCTCCACCTGCGAGCCCTGGGATCTCCCGGCCATGTCCGTTATCAAGTCCGACGACCCCGAGTGGTTCTTCTTCGCCCCCCGCGACCGCAAGTATCCCGGCGGCCACCGCTCCAACCGCTCCACCGCCGCCGGCTACTGGAAGGCCACCGGCAAGGACCGCCTCATCCGCTCCCGCCCCGCCGGCCCCCTCATCGGCATCAAGAAGACCCTCGTCTTCCACCGCGGCAGAGCTCCGCGGGGCCTCCGCACCGCCTGGATCATGCACGAGTACCGCACCACTGAGCCTCACTTCCAATCAGGCAAAAACGGTAGCTTCGTTCTGTATCGCCTGTTTAACAAGCACGAACAAGATGATACCCATACCCCGGCCTCCAATTTGGACCAACAATTGTCCACGTCTTCTCAAGGCAATCCCCAAAATGGCACACCTGCTGTCCAACCGGCCCTCGCCTCAATAATGAAGGATCATCAGACCTTACCATCATCTGGTTTCAGCCAACTGACTGAAATACAAGATGCTAGTACATCTGTCCATGACAAAGAGCAAACTGTAGCCCATGACGATGCTTTTCTGGACGTGTTATCTCAACTTCCAGACCTAGAGCCTGAGCAAAGATACAATGGATTCCCTAATATCACCTCTCCAATTCGCCCTTACAGCGATCACCCTTTTGTCGGCAATCTGGGTGAGCAAGATCTTTCAGCGCATTTTGGCAGTACCTTGTCTGAGCAGGACCTGCAAAGTTTGTTGTTTAGTCCAAATTACACCAAAATGGATAAGCACCCCACTGGAAACGTAGAGTCTAATCCTACCGCGTCGTCCAACAATCCAAACAATAACACATTACTCATGGATAGTTGGAGGAAGAATGATTCATATCAGATGCTTCTAATTCAGGTTAGAATATTCTAGAATTTACTCTTACACATTTTGACTAATCTCATGAGAACATTTTCTTCCCTTCTATTTCCTGTTCTAAACAAAGCGTGCAGACAACACAGATGCTACTTGCTGTTCTTCTTCAATCAATGCACCACAAACAGAAACAAGTGATGCTAATCTTGAAGCAAGAGCCCAGAGTAGCAGCATGGTCTACAGTGGAGTAGCCGAGGGCTCCCCCTTGTGCAACCAAGATCAACTACACTCCGCATTCAATCCTCACATGGAGTCACAAAAGAGTGGAGCCTTCTGTTGGGCTGGATTGTGGACCCCTTATCCCCAGCATTGGTTCGATACTATCGTAGAACCGGGCAGGAGTGGCATGACATTTTCAGATGCCTTGAAAGAACAAGGTCAGGAACAGGCACCTTCAATGAAGCACTTGACAGCTCAAGATCTCGTTGATCCACAACAAGGAACTGCTGCAAGAAGGATCCGCCTTGTATGCTCTGTTGAGAGGGCATCAGTCTCTCAACCTGTATCCTCACATTTGCAGAGTGAATATGAAGCTGGATCATGCTGTAACACTCGCAATTCATCTAATAACAAGAAGGAAAGTGTCAGGAGTGAAGATGAAGCTGGATCATGTTGTAACACTGGAAGTTCATCTAATAACCACAGCGAGGAAAATGACGATGCAGCCTCCCAGATTATGGATGGAGAACCAATGCATATTCAGTGCAAAGAGGATACCCCTATTCAAGTGGATCATTCAGCGGAAGTTATGGACAAGCTCCAAGGCTTCTCCTTTCATGAAGAGATGTTGGTACATGCTAATCAGCCCCGTGGAACTAATCTAAAGCAGAGGCTGTTGAGAGTGGAGTCTAGAAATAGCAATGAGAATAATGTACCTTCGTTGGAGACACGAGAACAGCAGCATGCACCTCATATTCAGAAATGGACTAGCTCTGTTGTGCGACTAGGGTGGGGGTGGCAGTGGCCGGCTCTCTTTGTGATGGCCGGCTCTCTGCTTTTGTTGGTTGGTGTGTGGAAATCTCTGAATCACACTACCTGACTAATGTAAATAAATGGTCGCTTAGCTTAAGCTTGGGAGCCTCATATATACTACTACATATGTTCTTTGGAAAGTACTGCAGGTAAC] consensusID : consensus_2883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 867 fasta sequence [GGACGTGTTATCTCAACTTCCAGACCTAGAGCCTGAGCAAAGATACAATGGATTCCCTAATATCACCTCTCCAATTCGCCCTTACAGCGATCACCCTTTTGTCGGCAATCTGGGTGAGCAAGATCTTTCAGCGCATTTTGGCAGTACCTTGTCTGAGCAGGACCTGCAAAGTTTGTTGTTTAGTCCAAATTACACCAAAATGGATAAGCACCCCACTGGAGACGTAGAGTCTAATCCTACCGCGTCGTCCAACAATCCAAACAATAACACATTACTCATGGATAGTTGGAGGAAGAATGATTCATATCAGATGCTTCTAATTCAGACAACACAGATGCTACCTTGCTGTTCTTCTTCAATCAATGCACCACAAACAGAAACAAGTGATGCTAATCTTGAAGCAAGAGCCCAGAGTAGCAGCATGGTCTACAGTGGAGTAGCCGAGGGCTCCCCCTTGTGCAACCAAGATCAACTACACTCCGCATTCAATCCTCACATGGAGTCACAAAAGAGTGGAGCCTTCTGTTGGGCTGGATTGTGGACCCCTTATCCCCAGCATTGGTTCGATACTATCGTAGAACCGGGCAGGAGTGGCATGACATTTTTCAGATGCCTTGAAAGAACAAGGTCAGGAACAGGCACCTTCAATGAAGCACTTGACAGCTCAAGATCTCGNTGATCCACAACAAGGAACTGCTGCAAGAANGATNCCGCCTTGTATGCTCTGNTGAGAGGGCATCAGTCTCTCAANCTGTATCTTTACATTTGGCAGAGNGAATATGAAGCTGGATCATGCTGGAACACTCGCAATTATCTAATAACAGAAAGGAAAGGNTCAGGAGNGNANATNAAACTGGATCATGTTGA] [+] EMBL CA764403 [GGACGTGTTATCTCAACTTCCAGACCTAGAGCCTGAGCAAAGATACAATGGATTCCCTAATATCACCTCTCCAATTCGCCCTTACAGCGATCACCCTTTTGTCGGCAATCTGGGTGAGCAAGATCTTTCAGCGCATTTTGGCAGTACCTTGTCTGAGCAGGACCTGCAAAGTTTGTTGTTTAGTCCAAATTACACCAAAATGGATAAGCACCCCACTGGAGACGTAGAGTCTAATCCTACCGCGTCGTCCAACAATCCAAACAATAACACATTACTCATGGATAGTTGGAGGAAGAATGATTCATATCAGATGCTTCTAATTCAGACAACACAGATGCTACCTTGCTGTTCTTCTTCAATCAATGCACCACAAACAGAAACAAGTGATGCTAATCTTGAAGCAAGAGCCCAGAGTAGCAGCATGGTCTACAGTGGAGTAGCCGAGGGCTCCCCCTTGTGCAACCAAGATCAACTACACTCCGCATTCAATCCTCACATGGAGTCACAAAAGAGTGGAGCCTTCTGTTGGGCTGGATTGTGGACCCCTTATCCCCAGCATTGGTTCGATACTATCGTAGAACCGGGCAGGAGTGGCATGACATTTTTCAGATGCCTTGAAAGAACAAGGTCAGGAACAGGCACCTTCAATGAAGCACTTGACAGCTCAAGATCTCGNTGATCCACAACAAGGAACTGCTGCAAGAANGATNCCGCCTTGTATGCTCTGNTGAGAGGGCATCAGTCTCTCAANCTGTATCTTTACATTTGGCAGAGNGAATATGAAGCTGGATCATGCTGGAACACTCGCAATTATCTAATAACAGAAAGGAAAGGNTCAGGAGNGNANATNAAACTGGATCATGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2883#0 GGTTCTCAAAAAAAAAGTGAAAGACAGAGAGGTCGGAGAAGGGAAAAGTGGCGATGAAAC 60 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 AAGGGAAAGTGGAGATGACGCCGGCGGTCGCCGCCGCGGCGGTTCTGCCGGTGGGGTTCC 120 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 GTTTCCGGCCGACGGACGAGGAGCTGGTGAGGCACTATCTGAAGGGAAAGATCGCTGGGC 180 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 GGAGCCACCCTGACCTCCTCCTCATCCCGGACGTGGACCTCTCCACCTGCGAGCCCTGGG 240 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 ATCTCCCGGCCATGTCCGTTATCAAGTCCGACGACCCCGAGTGGTTCTTCTTCGCCCCCC 300 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 GCGACCGCAAGTATCCCGGCGGCCACCGCTCCAACCGCTCCACCGCCGCCGGCTACTGGA 360 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 AGGCCACCGGCAAGGACCGCCTCATCCGCTCCCGCCCCGCCGGCCCCCTCATCGGCATCA 420 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 AGAAGACCCTCGTCTTCCACCGCGGCAGAGCTCCGCGGGGCCTCCGCACCGCCTGGATCA 480 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 TGCACGAGTACCGCACCACTGAGCCTCACTTCCAATCAGGCAAAAACGGTAGCTTCGTTC 540 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 TGTATCGCCTGTTTAACAAGCACGAACAAGATGATACCCATACCCCGGCCTCCAATTTGG 600 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 ACCAACAATTGTCCACGTCTTCTCAAGGCAATCCCCAAAATGGCACACCTGCTGTCCAAC 660 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 CGGCCCTCGCCTCAATAATGAAGGATCATCAGACCTTACCATCATCTGGTTTCAGCCAAC 720 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 TGACTGAAATACAAGATGCTAGTACATCTGTCCATGACAAAGAGCAAACTGTAGCCCATG 780 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 ACGATGCTTTTCTGGACGTGTTATCTCAACTTCCAGACCTAGAGCCTGAGCAAAGATACA 840 consensus_2883#1 -------------GGACGTGTTATCTCAACTTCCAGACCTAGAGCCTGAGCAAAGATACA 47 *********************************************** consensus_2883#0 ATGGATTCCCTAATATCACCTCTCCAATTCGCCCTTACAGCGATCACCCTTTTGTCGGCA 900 consensus_2883#1 ATGGATTCCCTAATATCACCTCTCCAATTCGCCCTTACAGCGATCACCCTTTTGTCGGCA 107 ************************************************************ consensus_2883#0 ATCTGGGTGAGCAAGATCTTTCAGCGCATTTTGGCAGTACCTTGTCTGAGCAGGACCTGC 960 consensus_2883#1 ATCTGGGTGAGCAAGATCTTTCAGCGCATTTTGGCAGTACCTTGTCTGAGCAGGACCTGC 167 ************************************************************ consensus_2883#0 AAAGTTTGTTGTTTAGTCCAAATTACACCAAAATGGATAAGCACCCCACTGGAAACGTAG 1020 consensus_2883#1 AAAGTTTGTTGTTTAGTCCAAATTACACCAAAATGGATAAGCACCCCACTGGAGACGTAG 227 ***************************************************** ****** consensus_2883#0 AGTCTAATCCTACCGCGTCGTCCAACAATCCAAACAATAACACATTACTCATGGATAGTT 1080 consensus_2883#1 AGTCTAATCCTACCGCGTCGTCCAACAATCCAAACAATAACACATTACTCATGGATAGTT 287 ************************************************************ consensus_2883#0 GGAGGAAGAATGATTCATATCAGATGCTTCTAATTCAGGTTAGAATATTCTAGAATTTAC 1140 consensus_2883#1 GGAGGAAGAATGATTCATATCAGATGCTTCTAATTCAG---------------------- 325 ************************************** consensus_2883#0 TCTTACACATTTTGACTAATCTCATGAGAACATTTTCTTCCCTTCTATTTCCTGTTCTAA 1200 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 ACAAAGCGTGCAGACAACACAGATGCTAC-TTGCTGTTCTTCTTCAATCAATGCACCACA 1259 consensus_2883#1 -------------ACAACACAGATGCTACCTTGCTGTTCTTCTTCAATCAATGCACCACA 372 **************** ****************************** consensus_2883#0 AACAGAAACAAGTGATGCTAATCTTGAAGCAAGAGCCCAGAGTAGCAGCATGGTCTACAG 1319 consensus_2883#1 AACAGAAACAAGTGATGCTAATCTTGAAGCAAGAGCCCAGAGTAGCAGCATGGTCTACAG 432 ************************************************************ consensus_2883#0 TGGAGTAGCCGAGGGCTCCCCCTTGTGCAACCAAGATCAACTACACTCCGCATTCAATCC 1379 consensus_2883#1 TGGAGTAGCCGAGGGCTCCCCCTTGTGCAACCAAGATCAACTACACTCCGCATTCAATCC 492 ************************************************************ consensus_2883#0 TCACATGGAGTCACAAAAGAGTGGAGCCTTCTGTTGGGCTGGATTGTGGACCCCTTATCC 1439 consensus_2883#1 TCACATGGAGTCACAAAAGAGTGGAGCCTTCTGTTGGGCTGGATTGTGGACCCCTTATCC 552 ************************************************************ consensus_2883#0 CCAGCATTGGTTCGATACTATCGTAGAACCGGGCAGGAGTGGCATGACATTTT-CAGATG 1498 consensus_2883#1 CCAGCATTGGTTCGATACTATCGTAGAACCGGGCAGGAGTGGCATGACATTTTTCAGATG 612 ***************************************************** ****** consensus_2883#0 CCTTGAAAGAACAAGGTCAGGAACAGGCACCTTCAATGAAGCACTTGACAGCTCAAGATC 1558 consensus_2883#1 CCTTGAAAGAACAAGGTCAGGAACAGGCACCTTCAATGAAGCACTTGACAGCTCAAGATC 672 ************************************************************ consensus_2883#0 TCGTTGATCCACAACAAGGAACTGCTGCAAGAAGGATCC-GCCTTGTATGCTCTGTTGAG 1617 consensus_2883#1 TCGNTGATCCACAACAAGGAACTGCTGCAAGAANGATNCCGCCTTGTATGCTCTGNTGAG 732 *** ***************************** *** * *************** **** consensus_2883#0 AGGGCATCAGTCTCTCAACCTGTATCCTCACATTTG-CAGAGTGAATATGAAGCTGGATC 1676 consensus_2883#1 AGGGCATCAGTCTCTCAANCTGTATCTTTACATTTGGCAGAGNGAATATGAAGCTGGATC 792 ****************** ******* * ******* ***** ***************** consensus_2883#0 ATGCTGTAACACTCGCAATTCATCTAATAACAAGAAGGAAAGTGTCAGGAGTGAAGATGA 1736 consensus_2883#1 ATGCTGGAACACTCGCAATT-ATCTAATAACAGAAAGGAAAGGNTCAGGAGNGNANATNA 851 ****** ************* *********** ******** ******* * * ** * consensus_2883#0 AGCTGGATCATGTTGTAACACTGGAAGTTCATCTAATAACCACAGCGAGGAAAATGACGA 1796 consensus_2883#1 AACTGGATCATGTTGA-------------------------------------------- 867 * ************* consensus_2883#0 TGCAGCCTCCCAGATTATGGATGGAGAACCAATGCATATTCAGTGCAAAGAGGATACCCC 1856 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 TATTCAAGTGGATCATTCAGCGGAAGTTATGGACAAGCTCCAAGGCTTCTCCTTTCATGA 1916 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 AGAGATGTTGGTACATGCTAATCAGCCCCGTGGAACTAATCTAAAGCAGAGGCTGTTGAG 1976 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 AGTGGAGTCTAGAAATAGCAATGAGAATAATGTACCTTCGTTGGAGACACGAGAACAGCA 2036 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 GCATGCACCTCATATTCAGAAATGGACTAGCTCTGTTGTGCGACTAGGGTGGGGGTGGCA 2096 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 GTGGCCGGCTCTCTTTGTGATGGCCGGCTCTCTGCTTTTGTTGGTTGGTGTGTGGAAATC 2156 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 TCTGAATCACACTACCTGACTAATGTAAATAAATGGTCGCTTAGCTTAAGCTTGGGAGCC 2216 consensus_2883#1 ------------------------------------------------------------ consensus_2883#0 TCATATATACTACTACATATGTTCTTTGGAAAGTACTGCAGGTAAC 2262 consensus_2883#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||