These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2886#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [AACCTCAAGAGGTGCATGGACGCGCACGNGACTACTACGCCCCCGTGCTCCGCGCCGAGCAGGCCGTCAACGACCACGCCGACGCCGCCATCGCCGCCGACAAGGCAAAGGAAGGCGGGGAGAAGAAGCTAGATGCGGTGGCCCAGGAGGCCGCGTCCGCCGCCGACGAGAAGAAACAACAGGTTGAGGAGAAGTCGTCGTCGTCTTCTTCCTCGCCGACCACCACCATTGACGNGAGAAAGGAGAAAGAAGTGGTGACTGAAAAGGCTGAATTCCTGAGTAACTTAACAGTTTTTTTCAAATTTNGGTTAAGCAATTGGAGTTTATGATCCTNACTGGTGATTGATATGAAGCAGAGCTAACTATATTATAGATTTNGTCAAGCCAAATTTTTTGGGNACCCTTTTGTGGGGGGGGAAANAAAGCCGATTACGGGTA] [+] EMBL C74183 [AACCTCAAGAGGTGCATGGACGCGCACGNGACTACTACGCCCCCGTGCTCCGCGCCGAGCAGGCCGTCAACGACCACGCCGACGCCGCCATCGCCGCCGACAAGGCAAAGGAAGGCGGGGAGAAGAAGCTAGATGCGGTGGCCCAGGAGGCCGCGTCCGCCGCCGACGAGAAGAAACAACAGGTTGAGGAGAAGTCGTCGTCGTCTTCTTCCTCGCCGACCACCACCATTGACGNGAGAAAGGAGAAAGAAGTGGTGACTGAAAAGGCTGAATTCCTGAGTAACTTAACAGTTTTTTTCAAATTTNGGTTAAGCAATTGGAGTTTATGATCCTNACTGGTGATTGATATGAAGCAGAGCTAACTATATTATAGATTTNGTCAAGCCAAATTTTTTGGGNACCCTTTTGTGGGGGGGGAAANAAAGCCGATTACGGGTA] consensusID : consensus_2886#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [CTCGCCGACCACCACCATTGACGAGAGAAAGGAGAAAGAAGTGGTGACTGAAAAGGNTGATTCCTGAGTAACTTAACAGTTTTTTTCAAATTTGGTTAGCAATTGAGTTTATGATCTTACTGTGATTGATATGAGCAGAGCTACTATATCATAGATTCGTCAAGCTAATTTTTGGGTCCCTTTGTGGGGGAAATAAAGCCGATTACGGAATAATTGTTGGACATGATAAGCAATTTACTGAGGAAATTTTGATGCTAAAAAAAAAAAAAAAAAAAAAAAANA] [+] EMBL AU161341 [CTCGCCGACCACCACCATTGACGAGAGAAAGGAGAAAGAAGTGGTGACTGAAAAGGNTGATTCCTGAGTAACTTAACAGTTTTTTTCAAATTTGGTTAGCAATTGAGTTTATGATCTTACTGTGATTGATATGAGCAGAGCTACTATATCATAGATTCGTCAAGCTAATTTTTGGGTCCCTTTGTGGGGGAAATAAAGCCGATTACGGAATAATTGTTGGACATGATAAGCAATTTACTGAGGAAATTTTGATGCTAAAAAAAAAAAAAAAAAAAAAAAANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2886#0 AACCTCAAGAGGTGCATGGACGCGCACGNGACTACTACGCCCCCGTGCTCCGCGCCGAGC 60 consensus_2886#1 ------------------------------------------------------------ consensus_2886#0 AGGCCGTCAACGACCACGCCGACGCCGCCATCGCCGCCGACAAGGCAAAGGAAGGCGGGG 120 consensus_2886#1 ------------------------------------------------------------ consensus_2886#0 AGAAGAAGCTAGATGCGGTGGCCCAGGAGGCCGCGTCCGCCGCCGACGAGAAGAAACAAC 180 consensus_2886#1 ------------------------------------------------------------ consensus_2886#0 AGGTTGAGGAGAAGTCGTCGTCGTCTTCTTCCTCGCCGACCACCACCATTGACGNGAGAA 240 consensus_2886#1 -------------------------------CTCGCCGACCACCACCATTGACGAGAGAA 29 *********************** ***** consensus_2886#0 AGGAGAAAGAAGTGGTGACTGAAAAGGCTGAATTCCTGAGTAACTTAACAGTTTTTTTCA 300 consensus_2886#1 AGGAGAAAGAAGTGGTGACTGAAAAGGNTGA-TTCCTGAGTAACTTAACAGTTTTTTTCA 88 *************************** *** **************************** consensus_2886#0 AATTTNGGTTAAGCAATTGGAGTTTATGATCCTNACTGGTGATTGATATGAAGCAGAGCT 360 consensus_2886#1 AATTTGG--TTAGCAATTG-AGTTTATGATC-TTACTG-TGATTGATATGA-GCAGAGCT 142 ***** * * ******** *********** * **** ************ ******** consensus_2886#0 AACTATATTATAGATTTNGTCAAGCCAAATTTTTTGGGNACCCTTTTGTGGGGGGGGAAA 420 consensus_2886#1 A-CTATATCATAGATT-CGTCAAGCTAA--TTTTTGGGT--CCCTTTGTGGGGG---AAA 193 * ****** ******* ******* ** ******** ** ********** *** consensus_2886#0 NAAAGCCGATTACGGG-TA----------------------------------------- 438 consensus_2886#1 TAAAGCCGATTACGGAATAATTGTTGGACATGATAAGCAATTTACTGAGGAAATTTTGAT 253 ************** ** consensus_2886#0 ----------------------------- consensus_2886#1 GCTAAAAAAAAAAAAAAAAAAAAAAAANA 282 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||