These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1421 fasta sequence [AACCTCGCATATACTCCAACATGATCCCTCTCTAGCTAACGTAATTCCCTTCTCTTTCCTCTCCGATCCGGCTCTCGTTGTGCATTAAGTGTTGATCGATCGGAGATGGCGACTCGGGAGGGAGGAGGACGAGGAGGAGGGCGGCCGCCGCTGCGAGTCGGGCGGACGCAGGAGTACCGGATGGGGAGGGAGACGCAGCTGCTCGCCGCTGAGGGCTCGCCGCCGGTCAGCCTCTTCGTGCTGTGCGGCGACCGCTTCGAGGCGGCGCGGCTGTTCCGCTCCGGCGGCCTGTCGGTGCGCATGGCCCGCGTCGAGGGCCACCCGGTCTCCATGGCCTCCTGCGCCGTCGGCAACCACCACTGGATGCTGTCCCGGGACGCCCTCGTCGCGCGCCTCGACGCCCGCGTCTTCGTCTTCGAGATGCCCGGATTCTTCTACGCCGTCGTCGGCGGCGGTGGCGCCGAGAGGAAGTGCGCCACCCTCGCCGAGATCTTCTCCCGGTTCTGCTCCTACCACGATCTCTCCACCACGCAGCAAGGTGAAGACGAAGCCGGCGGCGATATGAACCAACACTCCAACCCGTGGGTGCGCGCCCACGGCAGGATACAGCGTCTGAAGAAGCCCACCTCGCCGCCCGCCGGCGCCGGCCAGGCCACCGCCGACGCGGCGGCCGAACGCGCCGGCGCCGGCGCCGTTGTCGGACTCGCGAGCCAGCTGGAGCGCGCCGTACGCACGTCGGCGGTCGTCAAGCTGCTCAGTCGCTCCCTCCTCGCCGGCGCGCTCCAGCCCGCGCGCCACCTGATGATCACCCTCGCCGCCGCCGCCGGCGGCGCTGCCGCCAATAATGCCGCCGGGACCAGCGCCGGCGCCGGTGGCTCGGCGGCGGCGCTGCCGAGCAAGTCGGTCGTGTCCGACCTTCTGGAGGCCATCGAGACGAGCCGTACGTCGCCGCGGCGGGAGGCGGCGCGGAGGGCGGGCGGCGGCGCCGGCGGGCCCGGGTGGTGGAGCCTCAACGTGGAGGGCGTAATGCTGCTGCTCAGGGTCGTCCAGGCGGTCAGGGGGCGGAAGCTGCCGGCGCCGGAGAAGAGGACGCGCGACGGGGCGAGCGACGCCGCCGGCCTGAGAGGCGGCGGCATCATGGGCGGCGACGGCGGCGGCGCCGCGAGGCGGTGGTGCGGCGGCCGGCCGAAGAAGCTGGGCAACACGGTGGGCGCGTGTGGAACTCCTGATCTGAGGCTTTGTGTTAATGTTCCCAAAAGTGAACCGAGAGAGAGAGAGAGATTATTAATAGGTAATTAAGCGGAGGATTAGGTTAATGATATAGAGTTTAACAAGTTGATCTGTACTGTTAGATGCATGATCAGGTACTAATGCTTGGTCATAGTGTTTCTTGTTCTGCTTCTAATAATATTCATGAATCG] [+] EMBL AK105479 [AACCTCGCATATACTCCAACATGATCCCTCTCTAGCTAACGTAATTCCCTTCTCTTTCCTCTCCGATCCGGCTCTCGTTGTGCATTAAGTGTTGATCGATCGGAGATGGCGACTCGGGAGGGAGGAGGACGAGGAGGAGGGCGGCCGCCGCTGCGAGTCGGGCGGACGCAGGAGTACCGGATGGGGAGGGAGACGCAGCTGCTCGCCGCTGAGGGCTCGCCGCCGGTCAGCCTCTTCGTGCTGTGCGGCGACCGCTTCGAGGCGGCGCGGCTGTTCCGCTCCGGCGGCCTGTCGGTGCGCATGGCCCGCGTCGAGGGCCACCCGGTCTCCATGGCCTCCTGCGCCGTCGGCAACCACCACTGGATGCTGTCCCGGGACGCCCTCGTCGCGCGCCTCGACGCCCGCGTCTTCGTCTTCGAGATGCCCGGATTCTTCTACGCCGTCGTCGGCGGCGGTGGCGCCGAGAGGAAGTGCGCCACCCTCGCCGAGATCTTCTCCCGGTTCTGCTCCTACCACGATCTCTCCACCACGCAGCAAGGTGAAGACGAAGCCGGCGGCGATATGAACCAACACTCCAACCCGTGGGTGCGCGCCCACGGCAGGATACAGCGTCTGAAGAAGCCCACCTCGCCGCCCGCCGGCGCCGGCCAGGCCACCGCCGACGCGGCGGCCGAACGCGCCGGCGCCGGCGCCGTTGTCGGACTCGCGAGCCAGCTGGAGCGCGCCGTACGCACGTCGGCGGTCGTCAAGCTGCTCAGTCGCTCCCTCCTCGCCGGCGCGCTCCAGCCCGCGCGCCACCTGATGATCACCCTCGCCGCCGCCGCCGGCGGCGCTGCCGCCAATAATGCCGCCGGGACCAGCGCCGGCGCCGGTGGCTCGGCGGCGGCGCTGCCGAGCAAGTCGGTCGTGTCCGACCTTCTGGAGGCCATCGAGACGAGCCGTACGTCGCCGCGGCGGGAGGCGGCGCGGAGGGCGGGCGGCGGCGCCGGCGGGCCCGGGTGGTGGAGCCTCAACGTGGAGGGCGTAATGCTGCTGCTCAGGGTCGTCCAGGCGGTCAGGGGGCGGAAGCTGCCGGCGCCGGAGAAGAGGACGCGCGACGGGGCGAGCGACGCCGCCGGCCTGAGAGGCGGCGGCATCATGGGCGGCGACGGCGGCGGCGCCGCGAGGCGGTGGTGCGGCGGCCGGCCGAAGAAGCTGGGCAACACGGTGGGCGCGTGTGGAACTCCTGATCTGAGGCTTTGTGTTAATGTTCCCAAAAGTGAACCGAGAGAGAGAGAGAGATTATTAATAGGTAATTAAGCGGAGGATTAGGTTAATGATATAGAGTTTAACAAGTTGATCTGTACTGTTAGATGCATGATCAGGTACTAATGCTTGGTCATAGTGTTTCTTGTTCTGCTTCTAATAATATTCATGAATCG] consensusID : consensus_2909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence [ATACTCCAACATGATCCCTCTCTAGCTAACGTAATTCCCTTCTCTTTTCTCTCCGATCCGGCTCTCGTTGTGCATTAAGTGTTGATCGATCGGAGATGGCGACTCGGGAGGGAGGAGGACGAGGAGGAGGGCGGCCGCCGCTGCGAGTCGGGCGGACGCAGGAGTACCGGATGGGGAGGGAGACGCAGCTGCTCGCCGCTGAGGGCTCGCCGCCGGTCAGCCTCTTCGTGCTGTGCGGCGACCGCTTCGAGGCGGCGCGGCTGTTCCGCTCCGGCGGCCTGTCGGTGCGCATGGCCCGCGTCGAGGGCCACCCGGTCTCCATGGCCTCCTGCGCCGTCGGCAACCACCACTGGATGCTGTCCCGGGACGCCCTCGTCGCGCGCCTCGACGCCCGCGTCTTCGTCTTCGAGATGCCCGGATTCTTCTACGCCGTCGTCGGCGGCGGTGGCGCCGAGAGGAAGTGCGCCACCCTCGCCGAGATCTTCTCCCGGTTCTGCTCCTACCACGATCTCTCCACCACGCAGCAAGGTATTCCAATTAACATGCAAATTAGAACGCGTGTGATTACCAATTAATCCTACTAGTTAATTACATATTGTGCGATGCGTATCAAATTATCTTCATGCATGCGTGCATATATACTAGGTTGATTACTGTACACAACAACATGTACTAGATCAAAAACATTAGTTAGAGCAGGTACATAGCAAGCTATAAGCCGAATATGATACGCGATGAAAAGAGAAGAGAGAAGAAAGCAAGCTATTTGTATCTAGCTGTAACATAGACTATGATATGCG] [+] EMBL AK105322 [ATACTCCAACATGATCCCTCTCTAGCTAACGTAATTCCCTTCTCTTTTCTCTCCGATCCGGCTCTCGTTGTGCATTAAGTGTTGATCGATCGGAGATGGCGACTCGGGAGGGAGGAGGACGAGGAGGAGGGCGGCCGCCGCTGCGAGTCGGGCGGACGCAGGAGTACCGGATGGGGAGGGAGACGCAGCTGCTCGCCGCTGAGGGCTCGCCGCCGGTCAGCCTCTTCGTGCTGTGCGGCGACCGCTTCGAGGCGGCGCGGCTGTTCCGCTCCGGCGGCCTGTCGGTGCGCATGGCCCGCGTCGAGGGCCACCCGGTCTCCATGGCCTCCTGCGCCGTCGGCAACCACCACTGGATGCTGTCCCGGGACGCCCTCGTCGCGCGCCTCGACGCCCGCGTCTTCGTCTTCGAGATGCCCGGATTCTTCTACGCCGTCGTCGGCGGCGGTGGCGCCGAGAGGAAGTGCGCCACCCTCGCCGAGATCTTCTCCCGGTTCTGCTCCTACCACGATCTCTCCACCACGCAGCAAGGTATTCCAATTAACATGCAAATTAGAACGCGTGTGATTACCAATTAATCCTACTAGTTAATTACATATTGTGCGATGCGTATCAAATTATCTTCATGCATGCGTGCATATATACTAGGTTGATTACTGTACACAACAACATGTACTAGATCAAAAACATTAGTTAGAGCAGGTACATAGCAAGCTATAAGCCGAATATGATACGCGATGAAAAGAGAAGAGAGAAGAAAGCAAGCTATTTGTATCTAGCTGTAACATAGACTATGATATGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2909#0 AACCTCGCATATACTCCAACATGATCCCTCTCTAGCTAACGTAATTCCCTTCTCTTTCCT 60 consensus_2909#1 ----------ATACTCCAACATGATCCCTCTCTAGCTAACGTAATTCCCTTCTCTTTTCT 50 *********************************************** ** consensus_2909#0 CTCCGATCCGGCTCTCGTTGTGCATTAAGTGTTGATCGATCGGAGATGGCGACTCGGGAG 120 consensus_2909#1 CTCCGATCCGGCTCTCGTTGTGCATTAAGTGTTGATCGATCGGAGATGGCGACTCGGGAG 110 ************************************************************ consensus_2909#0 GGAGGAGGACGAGGAGGAGGGCGGCCGCCGCTGCGAGTCGGGCGGACGCAGGAGTACCGG 180 consensus_2909#1 GGAGGAGGACGAGGAGGAGGGCGGCCGCCGCTGCGAGTCGGGCGGACGCAGGAGTACCGG 170 ************************************************************ consensus_2909#0 ATGGGGAGGGAGACGCAGCTGCTCGCCGCTGAGGGCTCGCCGCCGGTCAGCCTCTTCGTG 240 consensus_2909#1 ATGGGGAGGGAGACGCAGCTGCTCGCCGCTGAGGGCTCGCCGCCGGTCAGCCTCTTCGTG 230 ************************************************************ consensus_2909#0 CTGTGCGGCGACCGCTTCGAGGCGGCGCGGCTGTTCCGCTCCGGCGGCCTGTCGGTGCGC 300 consensus_2909#1 CTGTGCGGCGACCGCTTCGAGGCGGCGCGGCTGTTCCGCTCCGGCGGCCTGTCGGTGCGC 290 ************************************************************ consensus_2909#0 ATGGCCCGCGTCGAGGGCCACCCGGTCTCCATGGCCTCCTGCGCCGTCGGCAACCACCAC 360 consensus_2909#1 ATGGCCCGCGTCGAGGGCCACCCGGTCTCCATGGCCTCCTGCGCCGTCGGCAACCACCAC 350 ************************************************************ consensus_2909#0 TGGATGCTGTCCCGGGACGCCCTCGTCGCGCGCCTCGACGCCCGCGTCTTCGTCTTCGAG 420 consensus_2909#1 TGGATGCTGTCCCGGGACGCCCTCGTCGCGCGCCTCGACGCCCGCGTCTTCGTCTTCGAG 410 ************************************************************ consensus_2909#0 ATGCCCGGATTCTTCTACGCCGTCGTCGGCGGCGGTGGCGCCGAGAGGAAGTGCGCCACC 480 consensus_2909#1 ATGCCCGGATTCTTCTACGCCGTCGTCGGCGGCGGTGGCGCCGAGAGGAAGTGCGCCACC 470 ************************************************************ consensus_2909#0 CTCGCCGAGATCTTCTCCCGGTTCTGCTCCTACCACGATCTCTCCACCACGCAGCAAGGT 540 consensus_2909#1 CTCGCCGAGATCTTCTCCCGGTTCTGCTCCTACCACGATCTCTCCACCACGCAGCAAGGT 530 ************************************************************ consensus_2909#0 GAAGACGAAGCCGGCGGCGATATGAACCAACACTCCAACCCGTGGGTGCGCGCCCACGGC 600 consensus_2909#1 -------------------ATTCCAATTAACATGCAAATTAGAACGCGTGTGATTACCAA 571 ** ** **** * ** * * * * * ** consensus_2909#0 AGGATACAGCGTCTGAAGAAGCCCACCTCGCCGCCCGCCGGCGCCGGCCAGGCCACCGCC 660 consensus_2909#1 TTAATCCTA---CTAGTTAATTACATATTGTG------CGATGCGTATCAAATTATCTTC 622 ** * ** ** ** * * ** ** ** * * * consensus_2909#0 GACGCGGCGGCCGAACGCGCCGGCGCCGGCGCCGTTGTCGGACTCGCGAGCCAGCTGGAG 720 consensus_2909#1 ATGCATGCGTGCATATATACTAGGTTGATTACTGTACACAACAACATGTACTAGATCAAA 682 *** * * * * * ** * * * * ** * * consensus_2909#0 CGCGCCGTACGCACGTCGGCGGTCGTCAAGCTGCTCAGTCGCTCCCTCCTCGCCGGCGCG 780 consensus_2909#1 AACATTAGTTAGA-GCAGGTACATAGCAAGCTA-TAAGCCGAATAT--------GATACG 732 * * * ** ****** * ** ** * ** consensus_2909#0 CTCCAGCCCGCGCGCCACCTGATGATCACCCTCGCCGCCGCCGCCGGCGGCGCTGCCGCC 840 consensus_2909#1 CGATGAAAAGAGAAGAGAGAAGAAAGCAAGCTATTTGTATCTAGCTGTAACATAGACTAT 792 * * * * ** ** * * * * * * * consensus_2909#0 AATAATGCCGCCGGGACCAGCGCCGGCGCCGGTGGCTCGGCGGCGGCGCTGCCGAGCAAG 900 consensus_2909#1 GATA-TGCG--------------------------------------------------- 800 *** *** consensus_2909#0 TCGGTCGTGTCCGACCTTCTGGAGGCCATCGAGACGAGCCGTACGTCGCCGCGGCGGGAG 960 consensus_2909#1 ------------------------------------------------------------ consensus_2909#0 GCGGCGCGGAGGGCGGGCGGCGGCGCCGGCGGGCCCGGGTGGTGGAGCCTCAACGTGGAG 1020 consensus_2909#1 ------------------------------------------------------------ consensus_2909#0 GGCGTAATGCTGCTGCTCAGGGTCGTCCAGGCGGTCAGGGGGCGGAAGCTGCCGGCGCCG 1080 consensus_2909#1 ------------------------------------------------------------ consensus_2909#0 GAGAAGAGGACGCGCGACGGGGCGAGCGACGCCGCCGGCCTGAGAGGCGGCGGCATCATG 1140 consensus_2909#1 ------------------------------------------------------------ consensus_2909#0 GGCGGCGACGGCGGCGGCGCCGCGAGGCGGTGGTGCGGCGGCCGGCCGAAGAAGCTGGGC 1200 consensus_2909#1 ------------------------------------------------------------ consensus_2909#0 AACACGGTGGGCGCGTGTGGAACTCCTGATCTGAGGCTTTGTGTTAATGTTCCCAAAAGT 1260 consensus_2909#1 ------------------------------------------------------------ consensus_2909#0 GAACCGAGAGAGAGAGAGAGATTATTAATAGGTAATTAAGCGGAGGATTAGGTTAATGAT 1320 consensus_2909#1 ------------------------------------------------------------ consensus_2909#0 ATAGAGTTTAACAAGTTGATCTGTACTGTTAGATGCATGATCAGGTACTAATGCTTGGTC 1380 consensus_2909#1 ------------------------------------------------------------ consensus_2909#0 ATAGTGTTTCTTGTTCTGCTTCTAATAATATTCATGAATCG 1421 consensus_2909#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||