|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1421 fasta sequence
[AACCTCGCATATACTCCAACATGATCCCTCTCTAGCTAACGTAATTCCCTTCTCTTTCCTCTCCGATCCGGCTCTCGTTGTGCATTAAGTGTTGATCGATCGGAGATGGCGACTCGGGAGGGAGGAGGACGAGGAGGAGGGCGGCCGCCGCTGCGAGTCGGGCGGACGCAGGAGTACCGGATGGGGAGGGAGACGCAGCTGCTCGCCGCTGAGGGCTCGCCGCCGGTCAGCCTCTTCGTGCTGTGCGGCGACCGCTTCGAGGCGGCGCGGCTGTTCCGCTCCGGCGGCCTGTCGGTGCGCATGGCCCGCGTCGAGGGCCACCCGGTCTCCATGGCCTCCTGCGCCGTCGGCAACCACCACTGGATGCTGTCCCGGGACGCCCTCGTCGCGCGCCTCGACGCCCGCGTCTTCGTCTTCGAGATGCCCGGATTCTTCTACGCCGTCGTCGGCGGCGGTGGCGCCGAGAGGAAGTGCGCCACCCTCGCCGAGATCTTCTCCCGGTTCTGCTCCTACCACGATCTCTCCACCACGCAGCAAGGTGAAGACGAAGCCGGCGGCGATATGAACCAACACTCCAACCCGTGGGTGCGCGCCCACGGCAGGATACAGCGTCTGAAGAAGCCCACCTCGCCGCCCGCCGGCGCCGGCCAGGCCACCGCCGACGCGGCGGCCGAACGCGCCGGCGCCGGCGCCGTTGTCGGACTCGCGAGCCAGCTGGAGCGCGCCGTACGCACGTCGGCGGTCGTCAAGCTGCTCAGTCGCTCCCTCCTCGCCGGCGCGCTCCAGCCCGCGCGCCACCTGATGATCACCCTCGCCGCCGCCGCCGGCGGCGCTGCCGCCAATAATGCCGCCGGGACCAGCGCCGGCGCCGGTGGCTCGGCGGCGGCGCTGCCGAGCAAGTCGGTCGTGTCCGACCTTCTGGAGGCCATCGAGACGAGCCGTACGTCGCCGCGGCGGGAGGCGGCGCGGAGGGCGGGCGGCGGCGCCGGCGGGCCCGGGTGGTGGAGCCTCAACGTGGAGGGCGTAATGCTGCTGCTCAGGGTCGTCCAGGCGGTCAGGGGGCGGAAGCTGCCGGCGCCGGAGAAGAGGACGCGCGACGGGGCGAGCGACGCCGCCGGCCTGAGAGGCGGCGGCATCATGGGCGGCGACGGCGGCGGCGCCGCGAGGCGGTGGTGCGGCGGCCGGCCGAAGAAGCTGGGCAACACGGTGGGCGCGTGTGGAACTCCTGATCTGAGGCTTTGTGTTAATGTTCCCAAAAGTGAACCGAGAGAGAGAGAGAGATTATTAATAGGTAATTAAGCGGAGGATTAGGTTAATGATATAGAGTTTAACAAGTTGATCTGTACTGTTAGATGCATGATCAGGTACTAATGCTTGGTCATAGTGTTTCTTGTTCTGCTTCTAATAATATTCATGAATCG]
[+] EMBL AK105479 [AACCTCGCATATACTCCAACATGATCCCTCTCTAGCTAACGTAATTCCCTTCTCTTTCCTCTCCGATCCGGCTCTCGTTGTGCATTAAGTGTTGATCGATCGGAGATGGCGACTCGGGAGGGAGGAGGACGAGGAGGAGGGCGGCCGCCGCTGCGAGTCGGGCGGACGCAGGAGTACCGGATGGGGAGGGAGACGCAGCTGCTCGCCGCTGAGGGCTCGCCGCCGGTCAGCCTCTTCGTGCTGTGCGGCGACCGCTTCGAGGCGGCGCGGCTGTTCCGCTCCGGCGGCCTGTCGGTGCGCATGGCCCGCGTCGAGGGCCACCCGGTCTCCATGGCCTCCTGCGCCGTCGGCAACCACCACTGGATGCTGTCCCGGGACGCCCTCGTCGCGCGCCTCGACGCCCGCGTCTTCGTCTTCGAGATGCCCGGATTCTTCTACGCCGTCGTCGGCGGCGGTGGCGCCGAGAGGAAGTGCGCCACCCTCGCCGAGATCTTCTCCCGGTTCTGCTCCTACCACGATCTCTCCACCACGCAGCAAGGTGAAGACGAAGCCGGCGGCGATATGAACCAACACTCCAACCCGTGGGTGCGCGCCCACGGCAGGATACAGCGTCTGAAGAAGCCCACCTCGCCGCCCGCCGGCGCCGGCCAGGCCACCGCCGACGCGGCGGCCGAACGCGCCGGCGCCGGCGCCGTTGTCGGACTCGCGAGCCAGCTGGAGCGCGCCGTACGCACGTCGGCGGTCGTCAAGCTGCTCAGTCGCTCCCTCCTCGCCGGCGCGCTCCAGCCCGCGCGCCACCTGATGATCACCCTCGCCGCCGCCGCCGGCGGCGCTGCCGCCAATAATGCCGCCGGGACCAGCGCCGGCGCCGGTGGCTCGGCGGCGGCGCTGCCGAGCAAGTCGGTCGTGTCCGACCTTCTGGAGGCCATCGAGACGAGCCGTACGTCGCCGCGGCGGGAGGCGGCGCGGAGGGCGGGCGGCGGCGCCGGCGGGCCCGGGTGGTGGAGCCTCAACGTGGAGGGCGTAATGCTGCTGCTCAGGGTCGTCCAGGCGGTCAGGGGGCGGAAGCTGCCGGCGCCGGAGAAGAGGACGCGCGACGGGGCGAGCGACGCCGCCGGCCTGAGAGGCGGCGGCATCATGGGCGGCGACGGCGGCGGCGCCGCGAGGCGGTGGTGCGGCGGCCGGCCGAAGAAGCTGGGCAACACGGTGGGCGCGTGTGGAACTCCTGATCTGAGGCTTTGTGTTAATGTTCCCAAAAGTGAACCGAGAGAGAGAGAGAGATTATTAATAGGTAATTAAGCGGAGGATTAGGTTAATGATATAGAGTTTAACAAGTTGATCTGTACTGTTAGATGCATGATCAGGTACTAATGCTTGGTCATAGTGTTTCTTGTTCTGCTTCTAATAATATTCATGAATCG]
consensusID : consensus_2909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence
[ATACTCCAACATGATCCCTCTCTAGCTAACGTAATTCCCTTCTCTTTTCTCTCCGATCCGGCTCTCGTTGTGCATTAAGTGTTGATCGATCGGAGATGGCGACTCGGGAGGGAGGAGGACGAGGAGGAGGGCGGCCGCCGCTGCGAGTCGGGCGGACGCAGGAGTACCGGATGGGGAGGGAGACGCAGCTGCTCGCCGCTGAGGGCTCGCCGCCGGTCAGCCTCTTCGTGCTGTGCGGCGACCGCTTCGAGGCGGCGCGGCTGTTCCGCTCCGGCGGCCTGTCGGTGCGCATGGCCCGCGTCGAGGGCCACCCGGTCTCCATGGCCTCCTGCGCCGTCGGCAACCACCACTGGATGCTGTCCCGGGACGCCCTCGTCGCGCGCCTCGACGCCCGCGTCTTCGTCTTCGAGATGCCCGGATTCTTCTACGCCGTCGTCGGCGGCGGTGGCGCCGAGAGGAAGTGCGCCACCCTCGCCGAGATCTTCTCCCGGTTCTGCTCCTACCACGATCTCTCCACCACGCAGCAAGGTATTCCAATTAACATGCAAATTAGAACGCGTGTGATTACCAATTAATCCTACTAGTTAATTACATATTGTGCGATGCGTATCAAATTATCTTCATGCATGCGTGCATATATACTAGGTTGATTACTGTACACAACAACATGTACTAGATCAAAAACATTAGTTAGAGCAGGTACATAGCAAGCTATAAGCCGAATATGATACGCGATGAAAAGAGAAGAGAGAAGAAAGCAAGCTATTTGTATCTAGCTGTAACATAGACTATGATATGCG]
[+] EMBL AK105322 [ATACTCCAACATGATCCCTCTCTAGCTAACGTAATTCCCTTCTCTTTTCTCTCCGATCCGGCTCTCGTTGTGCATTAAGTGTTGATCGATCGGAGATGGCGACTCGGGAGGGAGGAGGACGAGGAGGAGGGCGGCCGCCGCTGCGAGTCGGGCGGACGCAGGAGTACCGGATGGGGAGGGAGACGCAGCTGCTCGCCGCTGAGGGCTCGCCGCCGGTCAGCCTCTTCGTGCTGTGCGGCGACCGCTTCGAGGCGGCGCGGCTGTTCCGCTCCGGCGGCCTGTCGGTGCGCATGGCCCGCGTCGAGGGCCACCCGGTCTCCATGGCCTCCTGCGCCGTCGGCAACCACCACTGGATGCTGTCCCGGGACGCCCTCGTCGCGCGCCTCGACGCCCGCGTCTTCGTCTTCGAGATGCCCGGATTCTTCTACGCCGTCGTCGGCGGCGGTGGCGCCGAGAGGAAGTGCGCCACCCTCGCCGAGATCTTCTCCCGGTTCTGCTCCTACCACGATCTCTCCACCACGCAGCAAGGTATTCCAATTAACATGCAAATTAGAACGCGTGTGATTACCAATTAATCCTACTAGTTAATTACATATTGTGCGATGCGTATCAAATTATCTTCATGCATGCGTGCATATATACTAGGTTGATTACTGTACACAACAACATGTACTAGATCAAAAACATTAGTTAGAGCAGGTACATAGCAAGCTATAAGCCGAATATGATACGCGATGAAAAGAGAAGAGAGAAGAAAGCAAGCTATTTGTATCTAGCTGTAACATAGACTATGATATGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2909#0 AACCTCGCATATACTCCAACATGATCCCTCTCTAGCTAACGTAATTCCCTTCTCTTTCCT 60
consensus_2909#1 ----------ATACTCCAACATGATCCCTCTCTAGCTAACGTAATTCCCTTCTCTTTTCT 50
*********************************************** **
consensus_2909#0 CTCCGATCCGGCTCTCGTTGTGCATTAAGTGTTGATCGATCGGAGATGGCGACTCGGGAG 120
consensus_2909#1 CTCCGATCCGGCTCTCGTTGTGCATTAAGTGTTGATCGATCGGAGATGGCGACTCGGGAG 110
************************************************************
consensus_2909#0 GGAGGAGGACGAGGAGGAGGGCGGCCGCCGCTGCGAGTCGGGCGGACGCAGGAGTACCGG 180
consensus_2909#1 GGAGGAGGACGAGGAGGAGGGCGGCCGCCGCTGCGAGTCGGGCGGACGCAGGAGTACCGG 170
************************************************************
consensus_2909#0 ATGGGGAGGGAGACGCAGCTGCTCGCCGCTGAGGGCTCGCCGCCGGTCAGCCTCTTCGTG 240
consensus_2909#1 ATGGGGAGGGAGACGCAGCTGCTCGCCGCTGAGGGCTCGCCGCCGGTCAGCCTCTTCGTG 230
************************************************************
consensus_2909#0 CTGTGCGGCGACCGCTTCGAGGCGGCGCGGCTGTTCCGCTCCGGCGGCCTGTCGGTGCGC 300
consensus_2909#1 CTGTGCGGCGACCGCTTCGAGGCGGCGCGGCTGTTCCGCTCCGGCGGCCTGTCGGTGCGC 290
************************************************************
consensus_2909#0 ATGGCCCGCGTCGAGGGCCACCCGGTCTCCATGGCCTCCTGCGCCGTCGGCAACCACCAC 360
consensus_2909#1 ATGGCCCGCGTCGAGGGCCACCCGGTCTCCATGGCCTCCTGCGCCGTCGGCAACCACCAC 350
************************************************************
consensus_2909#0 TGGATGCTGTCCCGGGACGCCCTCGTCGCGCGCCTCGACGCCCGCGTCTTCGTCTTCGAG 420
consensus_2909#1 TGGATGCTGTCCCGGGACGCCCTCGTCGCGCGCCTCGACGCCCGCGTCTTCGTCTTCGAG 410
************************************************************
consensus_2909#0 ATGCCCGGATTCTTCTACGCCGTCGTCGGCGGCGGTGGCGCCGAGAGGAAGTGCGCCACC 480
consensus_2909#1 ATGCCCGGATTCTTCTACGCCGTCGTCGGCGGCGGTGGCGCCGAGAGGAAGTGCGCCACC 470
************************************************************
consensus_2909#0 CTCGCCGAGATCTTCTCCCGGTTCTGCTCCTACCACGATCTCTCCACCACGCAGCAAGGT 540
consensus_2909#1 CTCGCCGAGATCTTCTCCCGGTTCTGCTCCTACCACGATCTCTCCACCACGCAGCAAGGT 530
************************************************************
consensus_2909#0 GAAGACGAAGCCGGCGGCGATATGAACCAACACTCCAACCCGTGGGTGCGCGCCCACGGC 600
consensus_2909#1 -------------------ATTCCAATTAACATGCAAATTAGAACGCGTGTGATTACCAA 571
** ** **** * ** * * * * * **
consensus_2909#0 AGGATACAGCGTCTGAAGAAGCCCACCTCGCCGCCCGCCGGCGCCGGCCAGGCCACCGCC 660
consensus_2909#1 TTAATCCTA---CTAGTTAATTACATATTGTG------CGATGCGTATCAAATTATCTTC 622
** * ** ** ** * * ** ** ** * * *
consensus_2909#0 GACGCGGCGGCCGAACGCGCCGGCGCCGGCGCCGTTGTCGGACTCGCGAGCCAGCTGGAG 720
consensus_2909#1 ATGCATGCGTGCATATATACTAGGTTGATTACTGTACACAACAACATGTACTAGATCAAA 682
*** * * * * * ** * * * * ** * *
consensus_2909#0 CGCGCCGTACGCACGTCGGCGGTCGTCAAGCTGCTCAGTCGCTCCCTCCTCGCCGGCGCG 780
consensus_2909#1 AACATTAGTTAGA-GCAGGTACATAGCAAGCTA-TAAGCCGAATAT--------GATACG 732
* * * ** ****** * ** ** * **
consensus_2909#0 CTCCAGCCCGCGCGCCACCTGATGATCACCCTCGCCGCCGCCGCCGGCGGCGCTGCCGCC 840
consensus_2909#1 CGATGAAAAGAGAAGAGAGAAGAAAGCAAGCTATTTGTATCTAGCTGTAACATAGACTAT 792
* * * * ** ** * * * * * * *
consensus_2909#0 AATAATGCCGCCGGGACCAGCGCCGGCGCCGGTGGCTCGGCGGCGGCGCTGCCGAGCAAG 900
consensus_2909#1 GATA-TGCG--------------------------------------------------- 800
*** ***
consensus_2909#0 TCGGTCGTGTCCGACCTTCTGGAGGCCATCGAGACGAGCCGTACGTCGCCGCGGCGGGAG 960
consensus_2909#1 ------------------------------------------------------------
consensus_2909#0 GCGGCGCGGAGGGCGGGCGGCGGCGCCGGCGGGCCCGGGTGGTGGAGCCTCAACGTGGAG 1020
consensus_2909#1 ------------------------------------------------------------
consensus_2909#0 GGCGTAATGCTGCTGCTCAGGGTCGTCCAGGCGGTCAGGGGGCGGAAGCTGCCGGCGCCG 1080
consensus_2909#1 ------------------------------------------------------------
consensus_2909#0 GAGAAGAGGACGCGCGACGGGGCGAGCGACGCCGCCGGCCTGAGAGGCGGCGGCATCATG 1140
consensus_2909#1 ------------------------------------------------------------
consensus_2909#0 GGCGGCGACGGCGGCGGCGCCGCGAGGCGGTGGTGCGGCGGCCGGCCGAAGAAGCTGGGC 1200
consensus_2909#1 ------------------------------------------------------------
consensus_2909#0 AACACGGTGGGCGCGTGTGGAACTCCTGATCTGAGGCTTTGTGTTAATGTTCCCAAAAGT 1260
consensus_2909#1 ------------------------------------------------------------
consensus_2909#0 GAACCGAGAGAGAGAGAGAGATTATTAATAGGTAATTAAGCGGAGGATTAGGTTAATGAT 1320
consensus_2909#1 ------------------------------------------------------------
consensus_2909#0 ATAGAGTTTAACAAGTTGATCTGTACTGTTAGATGCATGATCAGGTACTAATGCTTGGTC 1380
consensus_2909#1 ------------------------------------------------------------
consensus_2909#0 ATAGTGTTTCTTGTTCTGCTTCTAATAATATTCATGAATCG 1421
consensus_2909#1 -----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||