cluster # 2910

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Oryza sativa
cluster # 2910 cluster # 2910 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2910#0 length = 644 sequences # 1

consensus_2910#1 length = 270 sequences # 1

consensusID : consensus_2910#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCCCCGGCCGCACCACCCCCTTCTTCTCCAACCTCTTGCAGCTGCAGACACAATCGTTAAATCGCGATCACCGCAGCAAGCCATGTCGTCGCAGCGGCCCGGCCGTCACCAGCGGAGGGCGTCGCAGAGCGTGTTCGTGCTCCCGGATAACTTCGCCGACCTCGACGACGTGCCGGCCGGCGCCGGCGGCGCCGGCGAGGACGGCCGGAAGGGCGCCGCCGCGACGGCGGACGCGGCCGGCGGGCAGCAGCAGGCTCGCCCATCGCCGGCGGCGCGCCACCGGAGGGCGATGTCGGTGGCCGTGGCGTCGTCCAGGGAGCTGGAGATGATCAAGGAGGACATGGGCAGCTACAAGATCGGCGCCTGATGCAGCATCGATCGCACACACAGGGGCGCCGTGCTTAGTACTTGCGGCTAAATCGTCATGTGTATGGCCGGTTAATTTTCGTGGTTAAGCGCGGCACGCGTCGCGTCAACCGATGTCTCGCTTGTTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTCTCTTTTGGTGAGGACATGTAAGATGGGAGATGTAATATTATGCTTCCTTTTTCCACACGATGACTGAATGAATCACT]

[+] EMBL AK107796             [CCCCCGGCCGCACCACCCCCTTCTTCTCCAACCTCTTGCAGCTGCAGACACAATCGTTAAATCGCGATCACCGCAGCAAGCCATGTCGTCGCAGCGGCCCGGCCGTCACCAGCGGAGGGCGTCGCAGAGCGTGTTCGTGCTCCCGGATAACTTCGCCGACCTCGACGACGTGCCGGCCGGCGCCGGCGGCGCCGGCGAGGACGGCCGGAAGGGCGCCGCCGCGACGGCGGACGCGGCCGGCGGGCAGCAGCAGGCTCGCCCATCGCCGGCGGCGCGCCACCGGAGGGCGATGTCGGTGGCCGTGGCGTCGTCCAGGGAGCTGGAGATGATCAAGGAGGACATGGGCAGCTACAAGATCGGCGCCTGATGCAGCATCGATCGCACACACAGGGGCGCCGTGCTTAGTACTTGCGGCTAAATCGTCATGTGTATGGCCGGTTAATTTTCGTGGTTAAGCGCGGCACGCGTCGCGTCAACCGATGTCTCGCTTGTTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTCTCTTTTGGTGAGGACATGTAAGATGGGAGATGTAATATTATGCTTCCTTTTTCCACACGATGACTGAATGAATCACT]




>consensus_2910#0
CCCCCGGCCGCACCACCCCCTTCTTCTCCAACCTCTTGCAGCTGCAGACACAATCGTTAA
ATCGCGATCACCGCAGCAAGCCATGTCGTCGCAGCGGCCCGGCCGTCACCAGCGGAGGGC
GTCGCAGAGCGTGTTCGTGCTCCCGGATAACTTCGCCGACCTCGACGACGTGCCGGCCGG
CGCCGGCGGCGCCGGCGAGGACGGCCGGAAGGGCGCCGCCGCGACGGCGGACGCGGCCGG
CGGGCAGCAGCAGGCTCGCCCATCGCCGGCGGCGCGCCACCGGAGGGCGATGTCGGTGGC
CGTGGCGTCGTCCAGGGAGCTGGAGATGATCAAGGAGGACATGGGCAGCTACAAGATCGG
CGCCTGATGCAGCATCGATCGCACACACAGGGGCGCCGTGCTTAGTACTTGCGGCTAAAT
CGTCATGTGTATGGCCGGTTAATTTTCGTGGTTAAGCGCGGCACGCGTCGCGTCAACCGA
TGTCTCGCTTGTTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTTTCTCTCTTTTGGTGAGGACATGTAAGATGGGAGATGT
AATATTATGCTTCCTTTTTCCACACGATGACTGAATGAATCACT

consensusID : consensus_2910#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [CCTGAATGCAGCATCGATTTCGCACACACCAGGGGCGCCCGTGCTTAGTACCTTGCCGGCCTAAATTCGTCATNGTGTATGGCCCGGTTAATTTTCGTGGTTAAGCGCGGCACGCGTCGCGTCCACCGATGTCTCGCTTGTTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTCTCTTTTGGTGAGGACATGTAAGATGGGAGATGTAATCTTATGCTTCCTTTTTCCACACGATGACTGAATGAATCACTAAAATGT]

[-] EMBL CB966820             [CCTGAATGCAGCATCGATTTCGCACACACCAGGGGCGCCCGTGCTTAGTACCTTGCCGGCCTAAATTCGTCATNGTGTATGGCCCGGTTAATTTTCGTGGTTAAGCGCGGCACGCGTCGCGTCCACCGATGTCTCGCTTGTTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTCTCTTTTGGTGAGGACATGTAAGATGGGAGATGTAATCTTATGCTTCCTTTTTCCACACGATGACTGAATGAATCACTAAAATGT]




>consensus_2910#1
CCTGAATGCAGCATCGATTTCGCACACACCAGGGGCGCCCGTGCTTAGTACCTTGCCGGC
CTAAATTCGTCATNGTGTATGGCCCGGTTAATTTTCGTGGTTAAGCGCGGCACGCGTCGC
GTCCACCGATGTCTCGCTTGTTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TTTCTCTCTTTTGGTGAGGACATGTAAGATGGGAGATGTAATCTTATGCTTCCTTTTTCC
ACACGATGACTGAATGAATCACTAAAATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2910#0      CCCCCGGCCGCACCACCCCCTTCTTCTCCAACCTCTTGCAGCTGCAGACACAATCGTTAA 60
consensus_2910#1      ------------------------------------------------------------
                                                                                  

consensus_2910#0      ATCGCGATCACCGCAGCAAGCCATGTCGTCGCAGCGGCCCGGCCGTCACCAGCGGAGGGC 120
consensus_2910#1      ------------------------------------------------------------
                                                                                  

consensus_2910#0      GTCGCAGAGCGTGTTCGTGCTCCCGGATAACTTCGCCGACCTCGACGACGTGCCGGCCGG 180
consensus_2910#1      ------------------------------------------------------------
                                                                                  

consensus_2910#0      CGCCGGCGGCGCCGGCGAGGACGGCCGGAAGGGCGCCGCCGCGACGGCGGACGCGGCCGG 240
consensus_2910#1      ------------------------------------------------------------
                                                                                  

consensus_2910#0      CGGGCAGCAGCAGGCTCGCCCATCGCCGGCGGCGCGCCACCGGAGGGCGATGTCGGTGGC 300
consensus_2910#1      ------------------------------------------------------------
                                                                                  

consensus_2910#0      CGTGGCGTCGTCCAGGGAGCTGGAGATGATCAAGGAGGACATGGGCAGCTACAAGATCGG 360
consensus_2910#1      ------------------------------------------------------------
                                                                                  

consensus_2910#0      CGCCTGA-TGCAGCATCGAT--CGCACACAC-AGGGGCGCC-GTGCTTAGTAC-TTGCGG 414
consensus_2910#1      --CCTGAATGCAGCATCGATTTCGCACACACCAGGGGCGCCCGTGCTTAGTACCTTGCCG 58
                        ***** ************  ********* ********* *********** **** *

consensus_2910#0      --CTAAAT-CGTCATG-TGTATGGCC-GGTTAATTTTCGTGGTTAAGCGCGGCACGCGTC 469
consensus_2910#1      GCCTAAATTCGTCATNGTGTATGGCCCGGTTAATTTTCGTGGTTAAGCGCGGCACGCGTC 118
                        ****** ******  ********* *********************************

consensus_2910#0      GCGTCAACCGATGTCTCGCTTGTTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT 529
consensus_2910#1      GCGTCCACCGATGTCTCGCTTGTTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT 178
                      ***** ******************************************************

consensus_2910#0      CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTCTCTTTTGGTGAGGACATGTAAG 589
consensus_2910#1      CTT------------------------------TTCTCTCTTTTGGTGAGGACATGTAAG 208
                      ***                              ***************************

consensus_2910#0      ATGGGAGATGTAATATTATGCTTCCTTTTTCCACACGATGACTGAATGAATCACT----- 644
consensus_2910#1      ATGGGAGATGTAATCTTATGCTTCCTTTTTCCACACGATGACTGAATGAATCACTAAAAT 268
                      ************** ****************************************     

consensus_2910#0      --
consensus_2910#1      GT 270