cluster # 2911

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Oryza sativa
cluster # 2911 cluster # 2911 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2911#0 length = 948 sequences # 1

consensus_2911#1 length = 243 sequences # 1

consensusID : consensus_2911#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 948
fasta sequence

                              [TGCAGTTGTGATCGGTCGAACAGGTGGTGGGCGGCAATGGCGGCGGGCGCGGAGGCGGCGGCGGAGTCCATGTTCTTGCCGTTCTTGGCGATGTTCGCGGCTATATACCTCGTCGGGTACCTCGTCGTGTTCCGGCGGTGGGGCGGCGCGCAGAGGGCGGAGGCGTCGAGCTGCTTCGCGTCGCTGTTCCACGGCACGCCGGCGGCGGCGCTCGCGCTCCGCGCCGTGCTGTCCAACCCGCGCGGCTGCTGCGTCGGCGTCGCCGGCGACCTCGCGGCGCCCAACACGCGCGCCGACGAGCTCGCCCTCGACTTCAGCACGGCCTACTTCGCCGTCGACCTGGCGCACTACCTCGTCCTCCTCCCGGGCGAGCGCCTCTTCGTGGCGCACCACCTCGCCACGCTCTACGTGCTCGCCACCTGCCGCGCCGCGGCGCGCCGCGGCGCCTGCGCGCTGCTCGTCATGGAGGTGCTCGCCGAGGCCACCAGCCTCGCGCAGAACCTGTGGACGCTCGCCGGCATGCGGCGCGCCGGCTCGCCCGCGGCGGCCGCGGCGCACGCGCGGCTGTCGCTCCCGTTCTACGCCGCGTACACCGCCATGAGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGACGGCGGCGGCGGCGCCGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACGGTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAACCTGTGGCTGGAATTCTTCAGAGAAAACAAAAGAAAAGAGAGCAGCAAGGAGCAGTGACTGCATTTCTGCACTTCTGTTGAAATTTTTTTTGCATGATTTGGATGGATGCAATTTTACAGGATTTTCATAAGAATCAAACTAATTCATGTGAAATTCTTGTAAGATCCCTTCGTTCCAAAGTAT]

[+] EMBL AK107948             [TGCAGTTGTGATCGGTCGAACAGGTGGTGGGCGGCAATGGCGGCGGGCGCGGAGGCGGCGGCGGAGTCCATGTTCTTGCCGTTCTTGGCGATGTTCGCGGCTATATACCTCGTCGGGTACCTCGTCGTGTTCCGGCGGTGGGGCGGCGCGCAGAGGGCGGAGGCGTCGAGCTGCTTCGCGTCGCTGTTCCACGGCACGCCGGCGGCGGCGCTCGCGCTCCGCGCCGTGCTGTCCAACCCGCGCGGCTGCTGCGTCGGCGTCGCCGGCGACCTCGCGGCGCCCAACACGCGCGCCGACGAGCTCGCCCTCGACTTCAGCACGGCCTACTTCGCCGTCGACCTGGCGCACTACCTCGTCCTCCTCCCGGGCGAGCGCCTCTTCGTGGCGCACCACCTCGCCACGCTCTACGTGCTCGCCACCTGCCGCGCCGCGGCGCGCCGCGGCGCCTGCGCGCTGCTCGTCATGGAGGTGCTCGCCGAGGCCACCAGCCTCGCGCAGAACCTGTGGACGCTCGCCGGCATGCGGCGCGCCGGCTCGCCCGCGGCGGCCGCGGCGCACGCGCGGCTGTCGCTCCCGTTCTACGCCGCGTACACCGCCATGAGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGACGGCGGCGGCGGCGCCGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACGGTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAACCTGTGGCTGGAATTCTTCAGAGAAAACAAAAGAAAAGAGAGCAGCAAGGAGCAGTGACTGCATTTCTGCACTTCTGTTGAAATTTTTTTTGCATGATTTGGATGGATGCAATTTTACAGGATTTTCATAAGAATCAAACTAATTCATGTGAAATTCTTGTAAGATCCCTTCGTTCCAAAGTAT]




>consensus_2911#0
TGCAGTTGTGATCGGTCGAACAGGTGGTGGGCGGCAATGGCGGCGGGCGCGGAGGCGGCG
GCGGAGTCCATGTTCTTGCCGTTCTTGGCGATGTTCGCGGCTATATACCTCGTCGGGTAC
CTCGTCGTGTTCCGGCGGTGGGGCGGCGCGCAGAGGGCGGAGGCGTCGAGCTGCTTCGCG
TCGCTGTTCCACGGCACGCCGGCGGCGGCGCTCGCGCTCCGCGCCGTGCTGTCCAACCCG
CGCGGCTGCTGCGTCGGCGTCGCCGGCGACCTCGCGGCGCCCAACACGCGCGCCGACGAG
CTCGCCCTCGACTTCAGCACGGCCTACTTCGCCGTCGACCTGGCGCACTACCTCGTCCTC
CTCCCGGGCGAGCGCCTCTTCGTGGCGCACCACCTCGCCACGCTCTACGTGCTCGCCACC
TGCCGCGCCGCGGCGCGCCGCGGCGCCTGCGCGCTGCTCGTCATGGAGGTGCTCGCCGAG
GCCACCAGCCTCGCGCAGAACCTGTGGACGCTCGCCGGCATGCGGCGCGCCGGCTCGCCC
GCGGCGGCCGCGGCGCACGCGCGGCTGTCGCTCCCGTTCTACGCCGCGTACACCGCCATG
AGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGAC
GGCGGCGGCGGCGCCGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACGGTG
GTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAACCTGTGGCTGGAATTC
TTCAGAGAAAACAAAAGAAAAGAGAGCAGCAAGGAGCAGTGACTGCATTTCTGCACTTCT
GTTGAAATTTTTTTTGCATGATTTGGATGGATGCAATTTTACAGGATTTTCATAAGAATC
AAACTAATTCATGTGAAATTCTTGTAAGATCCCTTCGTTCCAAAGTAT

consensusID : consensus_2911#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 243
fasta sequence

                              [CCCTCACTAAGGGAATACTTGCGGCGCGGCGCACGCGTGGCTGTCGCTCCCGTTCTACGCCGCGTACACGGCCATGAGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGACGACGGCGGCGGCGGCGCAGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACGGTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAA]

[+] EMBL CB966823             [CCCTCACTAAGGGAATACTTGCGGCGCGGCGCACGCGTGGCTGTCGCTCCCGTTCTACGCCGCGTACACGGCCATGAGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGACGACGGCGGCGGCGGCGCAGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACGGTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAA]




>consensus_2911#1
CCCTCACTAAGGGAATACTTGCGGCGCGGCGCACGCGTGGCTGTCGCTCCCGTTCTACGC
CGCGTACACGGCCATGAGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTT
CTACTACGCGTCGGACGACGGCGGCGGCGGCGCAGGCGGCGAGGCGTTGCCGGCGTGGGC
GCGGGCGTCGTGGACGGTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAG
CAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2911#0      TGCAGTTGTGATCGGTCGAACAGGTGGTGGGCGGCAATGGCGGCGGGCGCGGAGGCGGCG 60
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      GCGGAGTCCATGTTCTTGCCGTTCTTGGCGATGTTCGCGGCTATATACCTCGTCGGGTAC 120
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      CTCGTCGTGTTCCGGCGGTGGGGCGGCGCGCAGAGGGCGGAGGCGTCGAGCTGCTTCGCG 180
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      TCGCTGTTCCACGGCACGCCGGCGGCGGCGCTCGCGCTCCGCGCCGTGCTGTCCAACCCG 240
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      CGCGGCTGCTGCGTCGGCGTCGCCGGCGACCTCGCGGCGCCCAACACGCGCGCCGACGAG 300
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      CTCGCCCTCGACTTCAGCACGGCCTACTTCGCCGTCGACCTGGCGCACTACCTCGTCCTC 360
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      CTCCCGGGCGAGCGCCTCTTCGTGGCGCACCACCTCGCCACGCTCTACGTGCTCGCCACC 420
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      TGCCGCGCCGCGGCGCGCCGCGGCGCCTGCGCGCTGCTCGTCATGGAGGTGCTCGCCGAG 480
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      GCCACCAGCCTCGCGCAGAACCTGTGGACGCTCGCCGGCATGCGGCGCGCCGGCTCGCCC 540
consensus_2911#1      --------------------------------------CCCTCACTAAG--GGAATACTT 20
                                                            *   *     *  **    *  

consensus_2911#0      GCGGCGGCCGCGGCGCACGCGCGGCTGTCGCTCCCGTTCTACGCCGCGTACACCGCCATG 600
consensus_2911#1      GCGGCG----CGGCGCACGCGTGGCTGTCGCTCCCGTTCTACGCCGCGTACACGGCCATG 76
                      ******    *********** ******************************* ******

consensus_2911#0      AGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGAC 660
consensus_2911#1      AGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGAC 136
                      ************************************************************

consensus_2911#0      G---GCGGCGGCGGCGCCGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACG 717
consensus_2911#1      GACGGCGGCGGCGGCGCAGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACG 196
                      *   ************* ******************************************

consensus_2911#0      GTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAACCTGTGGCTGGAA 777
consensus_2911#1      GTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAA------------- 243
                      ***********************************************             

consensus_2911#0      TTCTTCAGAGAAAACAAAAGAAAAGAGAGCAGCAAGGAGCAGTGACTGCATTTCTGCACT 837
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      TCTGTTGAAATTTTTTTTGCATGATTTGGATGGATGCAATTTTACAGGATTTTCATAAGA 897
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      ATCAAACTAATTCATGTGAAATTCTTGTAAGATCCCTTCGTTCCAAAGTAT 948
consensus_2911#1      ---------------------------------------------------