These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 948 fasta sequence [TGCAGTTGTGATCGGTCGAACAGGTGGTGGGCGGCAATGGCGGCGGGCGCGGAGGCGGCGGCGGAGTCCATGTTCTTGCCGTTCTTGGCGATGTTCGCGGCTATATACCTCGTCGGGTACCTCGTCGTGTTCCGGCGGTGGGGCGGCGCGCAGAGGGCGGAGGCGTCGAGCTGCTTCGCGTCGCTGTTCCACGGCACGCCGGCGGCGGCGCTCGCGCTCCGCGCCGTGCTGTCCAACCCGCGCGGCTGCTGCGTCGGCGTCGCCGGCGACCTCGCGGCGCCCAACACGCGCGCCGACGAGCTCGCCCTCGACTTCAGCACGGCCTACTTCGCCGTCGACCTGGCGCACTACCTCGTCCTCCTCCCGGGCGAGCGCCTCTTCGTGGCGCACCACCTCGCCACGCTCTACGTGCTCGCCACCTGCCGCGCCGCGGCGCGCCGCGGCGCCTGCGCGCTGCTCGTCATGGAGGTGCTCGCCGAGGCCACCAGCCTCGCGCAGAACCTGTGGACGCTCGCCGGCATGCGGCGCGCCGGCTCGCCCGCGGCGGCCGCGGCGCACGCGCGGCTGTCGCTCCCGTTCTACGCCGCGTACACCGCCATGAGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGACGGCGGCGGCGGCGCCGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACGGTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAACCTGTGGCTGGAATTCTTCAGAGAAAACAAAAGAAAAGAGAGCAGCAAGGAGCAGTGACTGCATTTCTGCACTTCTGTTGAAATTTTTTTTGCATGATTTGGATGGATGCAATTTTACAGGATTTTCATAAGAATCAAACTAATTCATGTGAAATTCTTGTAAGATCCCTTCGTTCCAAAGTAT] [+] EMBL AK107948 [TGCAGTTGTGATCGGTCGAACAGGTGGTGGGCGGCAATGGCGGCGGGCGCGGAGGCGGCGGCGGAGTCCATGTTCTTGCCGTTCTTGGCGATGTTCGCGGCTATATACCTCGTCGGGTACCTCGTCGTGTTCCGGCGGTGGGGCGGCGCGCAGAGGGCGGAGGCGTCGAGCTGCTTCGCGTCGCTGTTCCACGGCACGCCGGCGGCGGCGCTCGCGCTCCGCGCCGTGCTGTCCAACCCGCGCGGCTGCTGCGTCGGCGTCGCCGGCGACCTCGCGGCGCCCAACACGCGCGCCGACGAGCTCGCCCTCGACTTCAGCACGGCCTACTTCGCCGTCGACCTGGCGCACTACCTCGTCCTCCTCCCGGGCGAGCGCCTCTTCGTGGCGCACCACCTCGCCACGCTCTACGTGCTCGCCACCTGCCGCGCCGCGGCGCGCCGCGGCGCCTGCGCGCTGCTCGTCATGGAGGTGCTCGCCGAGGCCACCAGCCTCGCGCAGAACCTGTGGACGCTCGCCGGCATGCGGCGCGCCGGCTCGCCCGCGGCGGCCGCGGCGCACGCGCGGCTGTCGCTCCCGTTCTACGCCGCGTACACCGCCATGAGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGACGGCGGCGGCGGCGCCGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACGGTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAACCTGTGGCTGGAATTCTTCAGAGAAAACAAAAGAAAAGAGAGCAGCAAGGAGCAGTGACTGCATTTCTGCACTTCTGTTGAAATTTTTTTTGCATGATTTGGATGGATGCAATTTTACAGGATTTTCATAAGAATCAAACTAATTCATGTGAAATTCTTGTAAGATCCCTTCGTTCCAAAGTAT] consensusID : consensus_2911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 243 fasta sequence [CCCTCACTAAGGGAATACTTGCGGCGCGGCGCACGCGTGGCTGTCGCTCCCGTTCTACGCCGCGTACACGGCCATGAGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGACGACGGCGGCGGCGGCGCAGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACGGTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAA] [+] EMBL CB966823 [CCCTCACTAAGGGAATACTTGCGGCGCGGCGCACGCGTGGCTGTCGCTCCCGTTCTACGCCGCGTACACGGCCATGAGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGACGACGGCGGCGGCGGCGCAGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACGGTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2911#0 TGCAGTTGTGATCGGTCGAACAGGTGGTGGGCGGCAATGGCGGCGGGCGCGGAGGCGGCG 60 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 GCGGAGTCCATGTTCTTGCCGTTCTTGGCGATGTTCGCGGCTATATACCTCGTCGGGTAC 120 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 CTCGTCGTGTTCCGGCGGTGGGGCGGCGCGCAGAGGGCGGAGGCGTCGAGCTGCTTCGCG 180 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 TCGCTGTTCCACGGCACGCCGGCGGCGGCGCTCGCGCTCCGCGCCGTGCTGTCCAACCCG 240 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 CGCGGCTGCTGCGTCGGCGTCGCCGGCGACCTCGCGGCGCCCAACACGCGCGCCGACGAG 300 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 CTCGCCCTCGACTTCAGCACGGCCTACTTCGCCGTCGACCTGGCGCACTACCTCGTCCTC 360 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 CTCCCGGGCGAGCGCCTCTTCGTGGCGCACCACCTCGCCACGCTCTACGTGCTCGCCACC 420 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 TGCCGCGCCGCGGCGCGCCGCGGCGCCTGCGCGCTGCTCGTCATGGAGGTGCTCGCCGAG 480 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 GCCACCAGCCTCGCGCAGAACCTGTGGACGCTCGCCGGCATGCGGCGCGCCGGCTCGCCC 540 consensus_2911#1 --------------------------------------CCCTCACTAAG--GGAATACTT 20 * * * ** * consensus_2911#0 GCGGCGGCCGCGGCGCACGCGCGGCTGTCGCTCCCGTTCTACGCCGCGTACACCGCCATG 600 consensus_2911#1 GCGGCG----CGGCGCACGCGTGGCTGTCGCTCCCGTTCTACGCCGCGTACACGGCCATG 76 ****** *********** ******************************* ****** consensus_2911#0 AGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGAC 660 consensus_2911#1 AGGGCGGTGCTCGGGCCGGCGTGGTTCGTGAGGATGGTGCGGTTCTACTACGCGTCGGAC 136 ************************************************************ consensus_2911#0 G---GCGGCGGCGGCGCCGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACG 717 consensus_2911#1 GACGGCGGCGGCGGCGCAGGCGGCGAGGCGTTGCCGGCGTGGGCGCGGGCGTCGTGGACG 196 * ************* ****************************************** consensus_2911#0 GTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAACCTGTGGCTGGAA 777 consensus_2911#1 GTGGTGATCGGCGCCGGGATCGTGGTGAGCGTGCTCTGGGTGAGCAA------------- 243 *********************************************** consensus_2911#0 TTCTTCAGAGAAAACAAAAGAAAAGAGAGCAGCAAGGAGCAGTGACTGCATTTCTGCACT 837 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 TCTGTTGAAATTTTTTTTGCATGATTTGGATGGATGCAATTTTACAGGATTTTCATAAGA 897 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 ATCAAACTAATTCATGTGAAATTCTTGTAAGATCCCTTCGTTCCAAAGTAT 948 consensus_2911#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||