These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 880 fasta sequence [ATATCCAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCGAGCAGAGTGATTTAGCGAGAGTGATTAGTTAGCCGCTGACAATGAGACGCCAGGCTGTCGTCGAGCTCGTCGTCGTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTGCTCTGGCGCTGCCGCCGCCGATCAGCGGCAGCAAACAGGCAGCAACCAGCCGTCGTCGTCGCCTCCGACGCCGAGCTCACGGTCCAGAGCCCGAAGAAGCCGGCGCCGGCCCGGCGCCGCGGCGGCGGCAGCGCGCTCCGGCGAGCGCTGCTCCGCCTCCTGTTCTGCTCCCGCCGCCGCCTCACCCGCGTGGAGCCGGCCGACTCCGCCGCCGCCGCCACGCAGGGGGAGGAAGGGGAGCAGGCGGCGGGGCCCGACGAGGAGGAGGTGAACACGTGGAGGGATCGGTGGTTCGGGCCAGCCACCGCCGCCGCCTCGCGCGCGCTCTACACCATCGACGAGGAGTCCGGCGCCGGCAGCGAGGGCGAGGAGGAGCCGGAGCCCGAGACGCCGTTCTACACGCCGCCGGCCTCCCCGCCCCGGCTCGGCGGCGGCGGCCACTCGCCGGAAGCCACCGTGTGAAGGTGAAGCTAGCAGCTGGTGTTCGTCCACGGTCCACCGCGACATGATTACCCGACCGTTTTCTTGTTTTCTTGTTGGCTAGTAGCAGGCTTGGATTTTTGTTGTCTTCTTTGATTTTTAGTTTTTTGCTCATGTCAAAACGACATTTTTTTAGCCAGGTTGCATGGTGCACAGGTACAGTGCAGTTAGTACTAGTGCTTAGTGTAGTTGTTACTACTTAATGCACGAGCAGGATGGTG] [+] EMBL AK107795 [ATATCCAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCGAGCAGAGTGATTTAGCGAGAGTGATTAGTTAGCCGCTGACAATGAGACGCCAGGCTGTCGTCGAGCTCGTCGTCGTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTGCTCTGGCGCTGCCGCCGCCGATCAGCGGCAGCAAACAGGCAGCAACCAGCCGTCGTCGTCGCCTCCGACGCCGAGCTCACGGTCCAGAGCCCGAAGAAGCCGGCGCCGGCCCGGCGCCGCGGCGGCGGCAGCGCGCTCCGGCGAGCGCTGCTCCGCCTCCTGTTCTGCTCCCGCCGCCGCCTCACCCGCGTGGAGCCGGCCGACTCCGCCGCCGCCGCCACGCAGGGGGAGGAAGGGGAGCAGGCGGCGGGGCCCGACGAGGAGGAGGTGAACACGTGGAGGGATCGGTGGTTCGGGCCAGCCACCGCCGCCGCCTCGCGCGCGCTCTACACCATCGACGAGGAGTCCGGCGCCGGCAGCGAGGGCGAGGAGGAGCCGGAGCCCGAGACGCCGTTCTACACGCCGCCGGCCTCCCCGCCCCGGCTCGGCGGCGGCGGCCACTCGCCGGAAGCCACCGTGTGAAGGTGAAGCTAGCAGCTGGTGTTCGTCCACGGTCCACCGCGACATGATTACCCGACCGTTTTCTTGTTTTCTTGTTGGCTAGTAGCAGGCTTGGATTTTTGTTGTCTTCTTTGATTTTTAGTTTTTTGCTCATGTCAAAACGACATTTTTTTAGCCAGGTTGCATGGTGCACAGGTACAGTGCAGTTAGTACTAGTGCTTAGTGTAGTTGTTACTACTTAATGCACGAGCAGGATGGTG] consensusID : consensus_2912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [TTTTTTTTTGAGTTGGCAAAACACCACATCAATCAAGCTAAACAAACACAACATATCCTCTGATCTTTTTCAGCCGGATTCTGGATACGAGTCGCTGGCAACTGGGCCCCACTCTGATTACGCAAAGTCGAAATCCCAAAAGTACCCCCTCCTCCTTTCTCTCCCACTAACCATCGCCTGGGAAATATTCGACTTAAAGCTAAAGAAGCCAACGTTAAAGACATCAAAAAATCAAAAAAGAAGAGACAGAAATTCTCTTTGCTCACAGGAAGGGAGTCATCTCGTTGGCCATATATCCAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCCAGCAGAGTGATTAGCTGCTGGCAATGAGACGCCAGGCTGTCGTCGAGCTCGTCGTCGTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTGCTCTGGCGCTGCGCCGCCGAGCGACAGCGAACACCGTCGTCGCCTCCGACGCCGAGCTCACGGTCCAGAGCCCGAAAGAAAGCCGGCGCCGGCCCGGCGCGGCAGCGCGCCTCCGGCAGAGCGCTGCTCCGCTCCTGCTCTGTCCCGCGCGCTCACCGGTGGGAGCCGCGATCGCGCGCG] [-] EMBL BI806508 [TTTTTTTTTGAGTTGGCAAAACACCACATCAATCAAGCTAAACAAACACAACATATCCTCTGATCTTTTTCAGCCGGATTCTGGATACGAGTCGCTGGCAACTGGGCCCCACTCTGATTACGCAAAGTCGAAATCCCAAAAGTACCCCCTCCTCCTTTCTCTCCCACTAACCATCGCCTGGGAAATATTCGACTTAAAGCTAAAGAAGCCAACGTTAAAGACATCAAAAAATCAAAAAAGAAGAGACAGAAATTCTCTTTGCTCACAGGAAGGGAGTCATCTCGTTGGCCATATATCCAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCCAGCAGAGTGATTAGCTGCTGGCAATGAGACGCCAGGCTGTCGTCGAGCTCGTCGTCGTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTGCTCTGGCGCTGCGCCGCCGAGCGACAGCGAACACCGTCGTCGCCTCCGACGCCGAGCTCACGGTCCAGAGCCCGAAAGAAAGCCGGCGCCGGCCCGGCGCGGCAGCGCGCCTCCGGCAGAGCGCTGCTCCGCTCCTGCTCTGTCCCGCGCGCTCACCGGTGGGAGCCGCGATCGCGCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2912#0 ATATCCAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCGAGCAGAGTGATT 60 consensus_2912#1 ------------------------------------------------------------ consensus_2912#0 TAGCGAGAGTGATTAGTTAGCCGCTGACAATGAGACGCCAGGCTGTCGTCGAGCTCGTCG 120 consensus_2912#1 ------------------------------------------------------------ consensus_2912#0 TCGTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTGC 180 consensus_2912#1 -------------------------------------------------TTTTTTTTTGA 11 * * ** consensus_2912#0 TCTGGCGCTGCCGCCGCCGATCAGCGGCAGCAAACAGGCAGCAACCAGCCGTCGTCGTCG 240 consensus_2912#1 GTTGGCAAAAC-ACCAC--ATCAATCAAGCTAAACAAACA-CAACATATCCTC-TGATCT 66 **** * ** * **** ***** ** **** * ** * ** consensus_2912#0 CCTCCGACGCCGAGCTCACGGTCCAGAGCCCGAAGAAGCCGGCGCCGGCCCGGCGCCGCG 300 consensus_2912#1 TTTTCA--GCCGGATTCTGGATACGAGTCGCTGGCAACTGGGCCCCACTCTGATTACGCA 124 * * **** ** * * * * * ** *** ** * * *** consensus_2912#0 GCGGCGGCAGCGCGCTCCGGCGAGCGCTGCTCCGCCTCCTGTTCTGCTCCCGCCGCCGCC 360 consensus_2912#1 AAGTCGAAA------TCCCAAAAGTAC--CCCCTCCTCCT-TTCT-CTCCCACTAAC-CA 173 * ** * *** ** * * ** ****** **** ***** * * * consensus_2912#0 TCACCCGCGTGGAGCCGGCCGACTCC--GCCGCCGCCGCCA-CGCAGGGGGAGGAAGGGG 417 consensus_2912#1 TCGCCTG---GGAAATATTCGACTTAAAGCTAAAGAAGCCAACGTTAAAGACATCAAAAA 230 ** ** * *** ***** ** * **** ** * * consensus_2912#0 AGCAGGCGGCGGGGCCCGACGAGGAGGAGGTGAACACGTGGAGGGATCGGTGGTTCGGGC 477 consensus_2912#1 ATCAAAAAAGAAGAGACAG-AAATTCTCTTTGCTCACAGGAAGGGAGTCATCTCGTTGGC 289 * ** * * * ** *** * ***** * *** consensus_2912#0 CAGCCACCGCCGCCGCCTCGCGCGCGCTCTACACCATCGACGAGGAGTCCGGCGCCGGCA 537 consensus_2912#1 CATATATC--------CAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCCA 341 ** * * * * * * ** ***** * * * ** ** consensus_2912#0 GCGAGGGCGAGGAGGAGCCGGAGCCCGAGACGCCGTTCTACACGCCGCCGGCCTCCCCGC 597 consensus_2912#1 GC-AGAGTGATTAGCTGCTGGCAAT-GAGACGCCAGGCT----GTCGTCGAGCTCGTCGT 395 ** ** * ** ** ** ** ******** ** * ** ** *** ** consensus_2912#0 CCCGGCTCGGCGGCGGCGGCCAC--TCGCCGGAAGCCACCGTGTGAAGGTGAAGCTAGCA 655 consensus_2912#1 C--GTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTG 453 * * * ******** *** * ****** ** ** * * * * ** consensus_2912#0 G-CTGGTGTT-CGTCCACGGTCCACCGCGACATGATTACCCGACCGTTTTCTTGTTTTCT 713 consensus_2912#1 CTCTGGCGCTGCGCCGCCGAGCGACAGCGA-------ACACCGTCGTCGCCTCCGACGCC 506 **** * * ** * ** * ** **** ** * *** ** * consensus_2912#0 TGTTGGCTAGTAGCAGGCTTGGATTTTTGTTGTCTTCTTTGATTTTTAGTTTTTTGCTCA 773 consensus_2912#1 GAGCTCACGGTCCAGAGCCCGAAAGAAAGCCGGCGCCGGCCCGGCGCGGCAGCGCGCCTC 566 ** ** * * * * * * * ** consensus_2912#0 TGTCAAAACGACATTTTTTTAGCCAGGTTGCATGGTGCACAGGTACAGTGCAGTTAGTAC 833 consensus_2912#1 CGGCAGAGCGCTGCTCCGCTC-CTGCTCTGTCCCGCGCGCTCAC-CGGTGGGAGCCGCGA 624 * ** * ** * * * ** * ** * * *** * consensus_2912#0 TAGTGCTTAGTGTAGTTGTTACTACTTAATGCACGAGCAGGATGGTG 880 consensus_2912#1 TCGCGCGCG-------------------------------------- 633 * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||