These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [AAAGTTTAATATGATATATTGATAAGCCATCTTAGAAACAACTTATAATTAGCAATTAAATAAATAAATAAATAAAAACATAAACAAGCTTATACCGTGACAGAACTCTGAGATGAGAGGAGTCAATACTGAAAATTAAAAAGAATAAATCATCTACAAGACCTATAGCTAATTGGCTAATCACTAAACACCTGCTCTTCCTTGCAGCTTGTCTGGCTGCCCACATGCAGCCACAACGCCTGCCGCCGTTCGCCGCACTTGCACTCCGGCGCCGGATGTTAACACCCCTCCGAGCGGCCTTGTTGTTTGCCTTCACGTCCCCACTCCGATTGCCGGAGGTCAGATGCTAGAANGGAATGAGCCGAGGANATAGTGTTTGACCCNTATCTGACTTCCACCAGAAAAGTTGGTGANAAAACGAACTGCTGAAGAAGAAGCCCCACAACTGAATGCTGACAAANNNNNNNNNNNNNNNNGAAAGGAAGATTCCACCCCAAANCTTGTCCTCCAGGCTGTCAACCCACCTNGTTTCTGGCNCATGGCCGTATTGTCNNGTACNTGTGAANGCTTTGCTTTNAGCAGNATACCCTTAANCCTGATAATGGANACCG] [+] EMBL BE229118 [AAAGTTTAATATGATATATTGATAAGCCATCTTAGAAACAACTTATAATTAGCAATTAAATAAATAAATAAATAAAAACATAAACAAGCTTATACCGTGACAGAACTCTGAGATGAGAGGAGTCAATACTGAAAATTAAAAAGAATAAATCATCTACAAGACCTATAGCTAATTGGCTAATCACTAAACACCTGCTCTTCCTTGCAGCTTGTCTGGCTGCCCACATGCAGCCACAACGCCTGCCGCCGTTCGCCGCACTTGCACTCCGGCGCCGGATGTTAACACCCCTCCGAGCGGCCTTGTTGTTTGCCTTCACGTCCCCACTCCGATTGCCGGAGGTCAGATGCTAGAANGGAATGAGCCGAGGANATAGTGTTTGACCCNTATCTGACTTCCACCAGAAAAGTTGGTGANAAAACGAACTGCTGAAGAAGAAGCCCCACAACTGAATGCTGACAAANNNNNNNNNNNNNNNNGAAAGGAAGATTCCACCCCAAANCTTGTCCTCCAGGCTGTCAACCCACCTNGTTTCTGGCNCATGGCCGTATTGTCNNGTACNTGTGAANGCTTTGCTTTNAGCAGNATACCCTTAANCCTGATAATGGANACCG] consensusID : consensus_2913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [CTGCCTGCCCACATGCAGCCACAACGCCTGCCGCCGTTCGCCGCACTTGCACTCCGGCGCCCGGATGTAACACCCCTCCGAGCGGCCCTTGTTGTTTGCCTTCACGTCGCCACTCGATTGCCGGAGGTCAGATGCTAGGAAGGGAATGAGCCAGAGGAGATAGTGTTAGACCCTTATCTGACGTCAACCAGGAAGATGTTGGTGAGAAGACTGAAGCTGCTGAGGAGGAGGCGCCAACAGAGCTGAGTGCTGAAGCTGAGCAAGAAGCAGAGCAAAGAGGAGAGGAGGACTTCAAGCTCAAGAAGCATTGCTCATCAAGGCCTGTCAAACCCAACCCTATGTATCATGGGCCACAGTGGGCCGTGTAAGTCTGTCCGTGGTAACAGCTGGTTGACAGCTGGCGTGTGTGGCGTGTAGAGGCGAGGCGATGAGCCACATATAAGAACTCGTGATGAACTAGGATGAACTCGGCTTTTGGCACCTGGTGGCGAAGGCGGCGGCAGGCACATCCTGTTGGATTGGTGCATATTATTTCAGTGATTGGTTGCCATATCAAAAAAAA] [+] EMBL BI800234 [CTGCCTGCCCACATGCAGCCACAACGCCTGCCGCCGTTCGCCGCACTTGCACTCCGGCGCCCGGATGTAACACCCCTCCGAGCGGCCCTTGTTGTTTGCCTTCACGTCGCCACTCGATTGCCGGAGGTCAGATGCTAGGAAGGGAATGAGCCAGAGGAGATAGTGTTAGACCCTTATCTGACGTCAACCAGGAAGATGTTGGTGAGAAGACTGAAGCTGCTGAGGAGGAGGCGCCAACAGAGCTGAGTGCTGAAGCTGAGCAAGAAGCAGAGCAAAGAGGAGAGGAGGACTTCAAGCTCAAGAAGCATTGCTCATCAAGGCCTGTCAAACCCAACCCTATGTATCATGGGCCACAGTGGGCCGTGTAAGTCTGTCCGTGGTAACAGCTGGTTGACAGCTGGCGTGTGTGGCGTGTAGAGGCGAGGCGATGAGCCACATATAAGAACTCGTGATGAACTAGGATGAACTCGGCTTTTGGCACCTGGTGGCGAAGGCGGCGGCAGGCACATCCTGTTGGATTGGTGCATATTATTTCAGTGATTGGTTGCCATATCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2913#0 AAAGTTTAATATGATATATTGATAAGCCATCTTAGAAACAACTTATAATTAGCAATTAAA 60 consensus_2913#1 ------------------------------------------------------------ consensus_2913#0 TAAATAAATAAATAAAAACATAAACAAGCTTATACCGTGACAGAACTCTGAGATGAGAGG 120 consensus_2913#1 ------------------------------------------------------------ consensus_2913#0 AGTCAATACTGAAAATTAAAAAGAATAAATCATCTACAAGACCTATAGCTAATTGGCTAA 180 consensus_2913#1 ------------------------------------------------------------ consensus_2913#0 TCACTAAACACCTGCTCTTCCTTGCAGCTTGTCTGGCTGCCCACATGCAGCCACAACGCC 240 consensus_2913#1 --------------------------------CTGCCTGCCCACATGCAGCCACAACGCC 28 *** ************************ consensus_2913#0 TGCCGCCGTTCGCCGCACTTGCACTCCGGCGCCGGATGTTAACACCCCTCCGAGCGGCC- 299 consensus_2913#1 TGCCGCCGTTCGCCGCACTTGCACTCCGGCGCCCGGATGTAACACCCCTCCGAGCGGCCC 88 ********************************* * ******************** consensus_2913#0 TTGTTGTTTGCCTTCACGTCCCCACTCCGATTGCCGGAGGTCAGATGCTAG-AANGGAAT 358 consensus_2913#1 TTGTTGTTTGCCTTCACGTCGCCACTC-GATTGCCGGAGGTCAGATGCTAGGAAGGGAAT 147 ******************** ****** *********************** ** ***** consensus_2913#0 GAGCC-GAGGANATAGTGTTTGACCCNTATCTGACTTCCACCAGAAAA--GTTGGTGANA 415 consensus_2913#1 GAGCCAGAGGAGATAGTGTTAGACCCTTATCTGACGTCAACCAGGAAGATGTTGGTGAGA 207 ***** ***** ******** ***** ******** ** ***** ** ******** * consensus_2913#0 AAAC--GAACTGCTGAAGAAGAAGCCCCAC---AACTGAATGCTGACA------AANNNN 464 consensus_2913#1 AGACTGAAGCTGCTGAGGAGGAGGCGCCAACAGAGCTGAGTGCTGAAGCTGAGCAAGAAG 267 * ** * ******* ** ** ** *** * **** ****** ** consensus_2913#0 NNNNNNNNNNNNGAAAGGAAGATTCCACCCC----AAANCTTGTCCTCCAGG--CTGTCA 518 consensus_2913#1 CAGAGCAAAGAGGAGAGGAGGACTTCAAGCTCAAGAAGCATTGCTCATCAAGGCCTGTCA 327 ** **** ** * ** * ** *** * ** * ****** consensus_2913#0 ACCC--ACCTNGT---TTCTGGCNCAT----GGCCGTATTGTCNNGTACNTGTGAANGCT 569 consensus_2913#1 AACCCAACCCTATGTATCATGGGCCACAGTGGGCCGTGTAAGTCTGTCCGTGGTAACAGC 387 * ** *** * * *** ** ****** * ** * ** ** consensus_2913#0 TTGCTTTNAGCAGNATACCCTTAANCCTGATAATGGANACCG------------------ 611 consensus_2913#1 TGGTTGACAGCTGG-CGTGTGTGGCGTGTAGAGGCGAGGCGATGAGCCACATATAAGAAC 446 * * * *** * * * * ** * consensus_2913#0 ------------------------------------------------------------ consensus_2913#1 TCGTGATGAACTAGGATGAACTCGGCTTTTGGCACCTGGTGGCGAAGGCGGCGGCAGGCA 506 consensus_2913#0 -------------------------------------------------------- consensus_2913#1 CATCCTGTTGGATTGGTGCATATTATTTCAGTGATTGGTTGCCATATCAAAAAAAA 562 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||