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Oryza sativa
cluster # 2915 cluster # 2915       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2915#0 length = 1838 sequences # 1  
 consensus_2915#1 length = 281 sequences # 1  
consensusID : consensus_2915#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1838
fasta sequence 
                              [CCTCCCCCCACCATCGGACAGCGAGATGGTCATGGAGATCCCGAGCTCGAAGCGCGACATGGCGCGGGGAGCGGAGGACGACGGCGAGGAGGAGGAGGAGGAGGAGTACGACCGCGTGTTCTACGAGGACATCGAGGCGCCCAAGTTCGTCGACCTCACCGCCCCCGACGCCGCCCGCCCCTCCGACGACCCCTCCTGGTTCTGCCTCCGCATCGGTTGTGACCAGAACCACGAGCATGTCGACCCGGAGGCGCTGCACAGGAGCTTCTTCATGCGGGTCATGGCAGCGAGGAGCCCCAACGTGCGGCTGCAGAAGGCGATCAGGAGGAGGAACCAGAGCTCGATGCTGAAATGCCCGCACTCCGCGCCGCCGAAGCCTCCAAGGTCACGGATCGCGAGGCTAAGCACGGCGACGGAGGCCGCGGCGAAGCCCAGGCTGAAGACCCACCGGATTTGCACCCTGCGGGCGTCTCCGACCCGGACCAAGGCGGCGAAGGTGGAGGCCTCCGGCGCGAGGAAGAAAGCCCTGACGACGCCGAGGAGCAAGCCCGTCCGGCCGAGGCAGGATCCGTTCCTCAGCGTGAAGCACCAGAAGCAGGAGCCCGTCGCGGCGGCGGCGAGGAAGGGGACCGTCGCGAAAGCTCTGTTCATGGCCACGCCGAAGAAGGACGCCAGCAAGACGCCGGCGAAGGCCCAGGCGGCGCCGCCGCTGTCCGAGGTCTGCTCCAAGATGAGGAAGCTGAATTTGGCGTGCCGGGAGGTGCCTAGCAGATACCTCTGTCAGTCATCGAATCCGAAGAGTTCCAAGAAATGCGACCAGACTGCAGTGAAGAGTGTCAAGGCAGCTCAAAATTCCAGGCCGGATGAGAGGAAGAAGAAGAAGATTCTAGGCTGCTCGTTGCAACATGCCAGTTCTGAAGCTGGTAGAGAGAACAGAAATGGCCGTGAGAACACAGCTGCAGATGAGAATGCTTGTCCAGAAGCTGCGAGCTCCAGCGAGGAACCGAAGGAGGTGATGCAGGAATCCAGAATTGAGGTGGAGACATCACAAGCTGACAATTGTGATGACGATAAGGAGAATTTGTCATATGTTGATCAGCCAACCGAACAAATGGTGATCATCTCGCATTCTGATGGTGAAAACCTGCAGCAGCTGGAGAACAATGAGAATGTCCCTCGGAAGGTAGCCAAAATGCAGAGCAAACTGAACGCAGAGCAAGGAGGAAAGCTCAAGAAAACTACCAATCCGAAGCCATTTCGGCTAAGGACTGATGAAAGAGGAGTGTTGAGAGAAGCAAATCCAGAAAGACACCAGACGCTCACCGAGAACAACTCCACGGCCGCAGTTCAGCAAATAGGAAGGTGTCGTGACGGAAAGGGACGAGACAAACCGACGTGCGGCGAGAAACAGAAGAAGCAAATCAGAAATGTTGCAACGGGTCAGGTTGATGAAGCCAAAAGGGTCTTGAACAGCATTCGTTGCAACAAGGTGAAGCCTGCGATGACGAATGGAAAAACAGTTGGGAAATCACAGGGAGCTTCCAGAGTAGCATCATCAACAAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAGTACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTTTTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTATTCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCCTTGTTTTGTCCGTGCCATTGGTATGTTGAGTGAAATTT]

[+] EMBL AK106660             [CCTCCCCCCACCATCGGACAGCGAGATGGTCATGGAGATCCCGAGCTCGAAGCGCGACATGGCGCGGGGAGCGGAGGACGACGGCGAGGAGGAGGAGGAGGAGGAGTACGACCGCGTGTTCTACGAGGACATCGAGGCGCCCAAGTTCGTCGACCTCACCGCCCCCGACGCCGCCCGCCCCTCCGACGACCCCTCCTGGTTCTGCCTCCGCATCGGTTGTGACCAGAACCACGAGCATGTCGACCCGGAGGCGCTGCACAGGAGCTTCTTCATGCGGGTCATGGCAGCGAGGAGCCCCAACGTGCGGCTGCAGAAGGCGATCAGGAGGAGGAACCAGAGCTCGATGCTGAAATGCCCGCACTCCGCGCCGCCGAAGCCTCCAAGGTCACGGATCGCGAGGCTAAGCACGGCGACGGAGGCCGCGGCGAAGCCCAGGCTGAAGACCCACCGGATTTGCACCCTGCGGGCGTCTCCGACCCGGACCAAGGCGGCGAAGGTGGAGGCCTCCGGCGCGAGGAAGAAAGCCCTGACGACGCCGAGGAGCAAGCCCGTCCGGCCGAGGCAGGATCCGTTCCTCAGCGTGAAGCACCAGAAGCAGGAGCCCGTCGCGGCGGCGGCGAGGAAGGGGACCGTCGCGAAAGCTCTGTTCATGGCCACGCCGAAGAAGGACGCCAGCAAGACGCCGGCGAAGGCCCAGGCGGCGCCGCCGCTGTCCGAGGTCTGCTCCAAGATGAGGAAGCTGAATTTGGCGTGCCGGGAGGTGCCTAGCAGATACCTCTGTCAGTCATCGAATCCGAAGAGTTCCAAGAAATGCGACCAGACTGCAGTGAAGAGTGTCAAGGCAGCTCAAAATTCCAGGCCGGATGAGAGGAAGAAGAAGAAGATTCTAGGCTGCTCGTTGCAACATGCCAGTTCTGAAGCTGGTAGAGAGAACAGAAATGGCCGTGAGAACACAGCTGCAGATGAGAATGCTTGTCCAGAAGCTGCGAGCTCCAGCGAGGAACCGAAGGAGGTGATGCAGGAATCCAGAATTGAGGTGGAGACATCACAAGCTGACAATTGTGATGACGATAAGGAGAATTTGTCATATGTTGATCAGCCAACCGAACAAATGGTGATCATCTCGCATTCTGATGGTGAAAACCTGCAGCAGCTGGAGAACAATGAGAATGTCCCTCGGAAGGTAGCCAAAATGCAGAGCAAACTGAACGCAGAGCAAGGAGGAAAGCTCAAGAAAACTACCAATCCGAAGCCATTTCGGCTAAGGACTGATGAAAGAGGAGTGTTGAGAGAAGCAAATCCAGAAAGACACCAGACGCTCACCGAGAACAACTCCACGGCCGCAGTTCAGCAAATAGGAAGGTGTCGTGACGGAAAGGGACGAGACAAACCGACGTGCGGCGAGAAACAGAAGAAGCAAATCAGAAATGTTGCAACGGGTCAGGTTGATGAAGCCAAAAGGGTCTTGAACAGCATTCGTTGCAACAAGGTGAAGCCTGCGATGACGAATGGAAAAACAGTTGGGAAATCACAGGGAGCTTCCAGAGTAGCATCATCAACAAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAGTACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTTTTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTATTCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCCTTGTTTTGTCCGTGCCATTGGTATGTTGAGTGAAATTT]




>consensus_2915#0
CCTCCCCCCACCATCGGACAGCGAGATGGTCATGGAGATCCCGAGCTCGAAGCGCGACAT
GGCGCGGGGAGCGGAGGACGACGGCGAGGAGGAGGAGGAGGAGGAGTACGACCGCGTGTT
CTACGAGGACATCGAGGCGCCCAAGTTCGTCGACCTCACCGCCCCCGACGCCGCCCGCCC
CTCCGACGACCCCTCCTGGTTCTGCCTCCGCATCGGTTGTGACCAGAACCACGAGCATGT
CGACCCGGAGGCGCTGCACAGGAGCTTCTTCATGCGGGTCATGGCAGCGAGGAGCCCCAA
CGTGCGGCTGCAGAAGGCGATCAGGAGGAGGAACCAGAGCTCGATGCTGAAATGCCCGCA
CTCCGCGCCGCCGAAGCCTCCAAGGTCACGGATCGCGAGGCTAAGCACGGCGACGGAGGC
CGCGGCGAAGCCCAGGCTGAAGACCCACCGGATTTGCACCCTGCGGGCGTCTCCGACCCG
GACCAAGGCGGCGAAGGTGGAGGCCTCCGGCGCGAGGAAGAAAGCCCTGACGACGCCGAG
GAGCAAGCCCGTCCGGCCGAGGCAGGATCCGTTCCTCAGCGTGAAGCACCAGAAGCAGGA
GCCCGTCGCGGCGGCGGCGAGGAAGGGGACCGTCGCGAAAGCTCTGTTCATGGCCACGCC
GAAGAAGGACGCCAGCAAGACGCCGGCGAAGGCCCAGGCGGCGCCGCCGCTGTCCGAGGT
CTGCTCCAAGATGAGGAAGCTGAATTTGGCGTGCCGGGAGGTGCCTAGCAGATACCTCTG
TCAGTCATCGAATCCGAAGAGTTCCAAGAAATGCGACCAGACTGCAGTGAAGAGTGTCAA
GGCAGCTCAAAATTCCAGGCCGGATGAGAGGAAGAAGAAGAAGATTCTAGGCTGCTCGTT
GCAACATGCCAGTTCTGAAGCTGGTAGAGAGAACAGAAATGGCCGTGAGAACACAGCTGC
AGATGAGAATGCTTGTCCAGAAGCTGCGAGCTCCAGCGAGGAACCGAAGGAGGTGATGCA
GGAATCCAGAATTGAGGTGGAGACATCACAAGCTGACAATTGTGATGACGATAAGGAGAA
TTTGTCATATGTTGATCAGCCAACCGAACAAATGGTGATCATCTCGCATTCTGATGGTGA
AAACCTGCAGCAGCTGGAGAACAATGAGAATGTCCCTCGGAAGGTAGCCAAAATGCAGAG
CAAACTGAACGCAGAGCAAGGAGGAAAGCTCAAGAAAACTACCAATCCGAAGCCATTTCG
GCTAAGGACTGATGAAAGAGGAGTGTTGAGAGAAGCAAATCCAGAAAGACACCAGACGCT
CACCGAGAACAACTCCACGGCCGCAGTTCAGCAAATAGGAAGGTGTCGTGACGGAAAGGG
ACGAGACAAACCGACGTGCGGCGAGAAACAGAAGAAGCAAATCAGAAATGTTGCAACGGG
TCAGGTTGATGAAGCCAAAAGGGTCTTGAACAGCATTCGTTGCAACAAGGTGAAGCCTGC
GATGACGAATGGAAAAACAGTTGGGAAATCACAGGGAGCTTCCAGAGTAGCATCATCAAC
AAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAG
TACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTT
TTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTAT
TCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCC
TTGTTTTGTCCGTGCCATTGGTATGTTGAGTGAAATTT

consensusID : consensus_2915#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence 
                              [GAGTAGCATCATCAACAAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAGTACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTTTTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTATTCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCCTTGTTTTGTCAAAAAAAAAAAAAAA]

[+] EMBL AU069243             [GAGTAGCATCATCAACAAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAGTACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTTTTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTATTCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCCTTGTTTTGTCAAAAAAAAAAAAAAA]




>consensus_2915#1
GAGTAGCATCATCAACAAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGG
TTGGAAAAGAGAAGAGTACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAAC
TGAAGTGACAAATGTTTTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGA
ATTCGTTCCATTGTATTCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAG
GATGTATCATGTTCCCTTGTTTTGTCAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2915#0      CCTCCCCCCACCATCGGACAGCGAGATGGTCATGGAGATCCCGAGCTCGAAGCGCGACAT 60
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      GGCGCGGGGAGCGGAGGACGACGGCGAGGAGGAGGAGGAGGAGGAGTACGACCGCGTGTT 120
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      CTACGAGGACATCGAGGCGCCCAAGTTCGTCGACCTCACCGCCCCCGACGCCGCCCGCCC 180
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      CTCCGACGACCCCTCCTGGTTCTGCCTCCGCATCGGTTGTGACCAGAACCACGAGCATGT 240
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      CGACCCGGAGGCGCTGCACAGGAGCTTCTTCATGCGGGTCATGGCAGCGAGGAGCCCCAA 300
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      CGTGCGGCTGCAGAAGGCGATCAGGAGGAGGAACCAGAGCTCGATGCTGAAATGCCCGCA 360
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      CTCCGCGCCGCCGAAGCCTCCAAGGTCACGGATCGCGAGGCTAAGCACGGCGACGGAGGC 420
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      CGCGGCGAAGCCCAGGCTGAAGACCCACCGGATTTGCACCCTGCGGGCGTCTCCGACCCG 480
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      GACCAAGGCGGCGAAGGTGGAGGCCTCCGGCGCGAGGAAGAAAGCCCTGACGACGCCGAG 540
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      GAGCAAGCCCGTCCGGCCGAGGCAGGATCCGTTCCTCAGCGTGAAGCACCAGAAGCAGGA 600
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      GCCCGTCGCGGCGGCGGCGAGGAAGGGGACCGTCGCGAAAGCTCTGTTCATGGCCACGCC 660
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      GAAGAAGGACGCCAGCAAGACGCCGGCGAAGGCCCAGGCGGCGCCGCCGCTGTCCGAGGT 720
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      CTGCTCCAAGATGAGGAAGCTGAATTTGGCGTGCCGGGAGGTGCCTAGCAGATACCTCTG 780
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      TCAGTCATCGAATCCGAAGAGTTCCAAGAAATGCGACCAGACTGCAGTGAAGAGTGTCAA 840
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      GGCAGCTCAAAATTCCAGGCCGGATGAGAGGAAGAAGAAGAAGATTCTAGGCTGCTCGTT 900
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      GCAACATGCCAGTTCTGAAGCTGGTAGAGAGAACAGAAATGGCCGTGAGAACACAGCTGC 960
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      AGATGAGAATGCTTGTCCAGAAGCTGCGAGCTCCAGCGAGGAACCGAAGGAGGTGATGCA 1020
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      GGAATCCAGAATTGAGGTGGAGACATCACAAGCTGACAATTGTGATGACGATAAGGAGAA 1080
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      TTTGTCATATGTTGATCAGCCAACCGAACAAATGGTGATCATCTCGCATTCTGATGGTGA 1140
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      AAACCTGCAGCAGCTGGAGAACAATGAGAATGTCCCTCGGAAGGTAGCCAAAATGCAGAG 1200
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      CAAACTGAACGCAGAGCAAGGAGGAAAGCTCAAGAAAACTACCAATCCGAAGCCATTTCG 1260
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      GCTAAGGACTGATGAAAGAGGAGTGTTGAGAGAAGCAAATCCAGAAAGACACCAGACGCT 1320
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      CACCGAGAACAACTCCACGGCCGCAGTTCAGCAAATAGGAAGGTGTCGTGACGGAAAGGG 1380
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      ACGAGACAAACCGACGTGCGGCGAGAAACAGAAGAAGCAAATCAGAAATGTTGCAACGGG 1440
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      TCAGGTTGATGAAGCCAAAAGGGTCTTGAACAGCATTCGTTGCAACAAGGTGAAGCCTGC 1500
consensus_2915#1      ------------------------------------------------------------
                                                                                  

consensus_2915#0      GATGACGAATGGAAAAACAGTTGGGAAATCACAGGGAGCTTCCAGAGTAGCATCATCAAC 1560
consensus_2915#1      --------------------------------------------GAGTAGCATCATCAAC 16
                                                                  ****************

consensus_2915#0      AAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAG 1620
consensus_2915#1      AAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAG 76
                      ************************************************************

consensus_2915#0      TACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTT 1680
consensus_2915#1      TACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTT 136
                      ************************************************************

consensus_2915#0      TTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTAT 1740
consensus_2915#1      TTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTAT 196
                      ************************************************************

consensus_2915#0      TCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCC 1800
consensus_2915#1      TCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCC 256
                      ************************************************************

consensus_2915#0      TTGTTTTGTCCGTGCCATTGGTATGTTGAGTGAAATTT 1838
consensus_2915#1      TTGTTTTGTCAAAAAAAAAAAAAAA------------- 281
                      **********      *     *


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)