|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1063 fasta sequence
[TGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGCAATTCAGAGAAATTTTACCATATCGAAAGCCCTCATAAGAAAAGGAAGTCTCAGTATGAGCTGAGTGATACTAGGGTTTCATCACTGAAGTACAAGTTTCGGAACAGATTAGCTTGGCAGGAAGATGAATCTTCAAGAACAGAAAGCTTAGGATGCAACAGTATTTTCGTCAACAGGAACTATGACATGGATATGGTGAACAGAGTTGAAGAATTGGAGTCCTGTGACAACACCCAAAGCCTTATTGGTGGGTGCATTGAAGTGGACTCTATAAACGGAATCGAGAGCCACAAAATGCTGAAGGTCCAGGCATTTTCATCCAGCAGCTCAAGCAACAACATTTCATCTGATGCCTTCACTTCTTCCCGTAGTAATGGCACCAAAGATACTGACAGTTGGGATATGCAGCACCTGGAGTATGATCACCCTGGTCTAATGCTGCTACCATATGATGATGACATAGAGGAGGCATACGATGTACTAGGACAATATGATGTTGTAATGAAAAATGATCTAGCGAGTGGTGATGTTGATGGTTCTGCTGCTGGTGTCATAGATGAGAAGCTTTACTCGAATGGAATAGAAGATTTACTCATATTGCCAAGAGGCCAGAATAGCATTCATGACGAGAAGAATAAGCTGACGATCGATCAAGAGTTTGAGCAGTATTTTACAAGGCTCATGCTTTAGCATTGATGATGTCATAAATCTCCGCTCTGTTCAACATCGGAAGACGCTTTGCTCCCTGCAGTCAGTGTGTGATTTGAGCTTAGCCCTGCACGAGCGAATGCGAGTGTTAGCTGCTATAGGAGCTAGGTGCCTATTTTTGTACATCTTCTTCACTGCTATGTATATATGTCTTCTGAGTTCTGAACGGACTAATGTACTCCTCTG]
[+] EMBL AK070454 [TGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGCAATTCAGAGAAATTTTACCATATCGAAAGCCCTCATAAGAAAAGGAAGTCTCAGTATGAGCTGAGTGATACTAGGGTTTCATCACTGAAGTACAAGTTTCGGAACAGATTAGCTTGGCAGGAAGATGAATCTTCAAGAACAGAAAGCTTAGGATGCAACAGTATTTTCGTCAACAGGAACTATGACATGGATATGGTGAACAGAGTTGAAGAATTGGAGTCCTGTGACAACACCCAAAGCCTTATTGGTGGGTGCATTGAAGTGGACTCTATAAACGGAATCGAGAGCCACAAAATGCTGAAGGTCCAGGCATTTTCATCCAGCAGCTCAAGCAACAACATTTCATCTGATGCCTTCACTTCTTCCCGTAGTAATGGCACCAAAGATACTGACAGTTGGGATATGCAGCACCTGGAGTATGATCACCCTGGTCTAATGCTGCTACCATATGATGATGACATAGAGGAGGCATACGATGTACTAGGACAATATGATGTTGTAATGAAAAATGATCTAGCGAGTGGTGATGTTGATGGTTCTGCTGCTGGTGTCATAGATGAGAAGCTTTACTCGAATGGAATAGAAGATTTACTCATATTGCCAAGAGGCCAGAATAGCATTCATGACGAGAAGAATAAGCTGACGATCGATCAAGAGTTTGAGCAGTATTTTACAAGGCTCATGCTTTAGCATTGATGATGTCATAAATCTCCGCTCTGTTCAACATCGGAAGACGCTTTGCTCCCTGCAGTCAGTGTGTGATTTGAGCTTAGCCCTGCACGAGCGAATGCGAGTGTTAGCTGCTATAGGAGCTAGGTGCCTATTTTTGTACATCTTCTTCACTGCTATGTATATATGTCTTCTGAGTTCTGAACGGACTAATGTACTCCTCTG]
consensusID : consensus_2918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence
[TAAAGTGGTGCATACATAATATGGGTGGTACAAGTATAAATTTAGGGTATCTTTGATTTGTAAAAAAAACATACGAAGTTTCGATTTCTCATTTTTGCGATTGAATTTAGGGTATATATGATTTCTCCGTTTTCTTATTCTTGCAATTGAAAGGGGTTAAGAGGATCCTTTTGTTTCCTATCGCTGGCTTGATCGGATCAGCTTTATTGCGGCTACACAGCCGCAACACCGCAACAACTCCAATTCAAAATATGTTATTGGAGAAAGGCCCAGGGGTCTTCCGACTAGTTTCACAAGATGATGGGCTAGACGACTTGGATATGTTATTGATACTGCAGATGCAGCACAGTTACAGCCGCAGCCAGCTATACCGAACAAGCCCATCAGTTCCTTTGGCACCAACCATCAGTTCCTTTGGCACACTCCACAGAGAATCCCCTGGACAGGAAGCGGAGAGCCGATAGGGAGGAGTCAGAGAGAGGGGTTGTTGTCCCTTCCCTTCATCAGTGAGCTGAGCCTGAGCCCCCGCTACATGTGGTTCCTTCCGCCTGTAAAATAACGACATATAGTATGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGGTTAGTAGTACTCAGAATACATCTTTCCCCCTCGCTTCTGCTGGTAGCTCTACATGNC]
[+] EMBL CA764493 [TAAAGTGGTGCATACATAATATGGGTGGTACAAGTATAAATTTAGGGTATCTTTGATTTGTAAAAAAAACATACGAAGTTTCGATTTCTCATTTTTGCGATTGAATTTAGGGTATATATGATTTCTCCGTTTTCTTATTCTTGCAATTGAAAGGGGTTAAGAGGATCCTTTTGTTTCCTATCGCTGGCTTGATCGGATCAGCTTTATTGCGGCTACACAGCCGCAACACCGCAACAACTCCAATTCAAAATATGTTATTGGAGAAAGGCCCAGGGGTCTTCCGACTAGTTTCACAAGATGATGGGCTAGACGACTTGGATATGTTATTGATACTGCAGATGCAGCACAGTTACAGCCGCAGCCAGCTATACCGAACAAGCCCATCAGTTCCTTTGGCACCAACCATCAGTTCCTTTGGCACACTCCACAGAGAATCCCCTGGACAGGAAGCGGAGAGCCGATAGGGAGGAGTCAGAGAGAGGGGTTGTTGTCCCTTCCCTTCATCAGTGAGCTGAGCCTGAGCCCCCGCTACATGTGGTTCCTTCCGCCTGTAAAATAACGACATATAGTATGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGGTTAGTAGTACTCAGAATACATCTTTCCCCCTCGCTTCTGCTGGTAGCTCTACATGNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2918#0 TGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCC 60
consensus_2918#1 ------------------------------------------------------------
consensus_2918#0 GATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGTGAAGGCGGCGGCGGC 120
consensus_2918#1 ------------------------------------------------------------
consensus_2918#0 GGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGCAATTCAGAGAA 180
consensus_2918#1 ------------------------------------------------------------
consensus_2918#0 ATTTTACCATATCGAAAGCCCTCATAAGAAAAGGAAGTCTCAGTATGAGCTGAGTGATAC 240
consensus_2918#1 -----------------------------TAAAGTGGTGCATACATAATATGGGTGGTAC 31
** * ** ** * ** *** ***
consensus_2918#0 TAGGGTTTCATCACTGAAGTACAAGTTTCGGAACAGATTAGCTTGGCAGGAAGATGAATC 300
consensus_2918#1 AAGTATAAATTTAGGGTATCTTTGATTTGTAAAAAAAACA-TACGAAGTTTCGATTTCTC 90
** * * * * * *** ** * * * * *** **
consensus_2918#0 TTCAAGAACAGAAAGCTTAGGATGCA-ACAGTATTTTCGTCAACAGGAACTATGACATGG 359
consensus_2918#1 ATTTTTGCGATTGAATTTAGGGTATATATGATTTCTCCGTTTTCTTATTCTTGCAATTGA 150
* * * ***** * * * * * * *** * ** * **
consensus_2918#0 ATATGGTGAACAGAGTTGAAGAATTGGAGTCCTGTGACAACACCCAA--AGCCTTATTGG 417
consensus_2918#1 AAGGGGTTAAGAGGATCCTTTTGTTTCCTATCGCTGGCTTGATCGGATCAGCTTTATTG- 209
* *** ** ** * ** * ** * * * * *** ******
consensus_2918#0 TGGGTGCATTGAAGTGG-ACTCTATAAACG--GAATCGAGAGCCACAAAATGCTGAAGGT 474
consensus_2918#1 CGGCTACACAGCCGCAACACCGCAACAACTCCAATTCAAAATATGTTATTGGAGAAAGGC 269
** * ** * * ** * *** * ** * * * * ****
consensus_2918#0 CCAGGCATTTTCATCCAGCAGCTCAAGCAACAACATTTCATCTGATGCCTTCACTTCTTC 534
consensus_2918#1 CCAGGGGTCTTC--CGACTAGTTTCA-CAA-GATGATGGGCTAGACGACTTGGATATGTT 325
***** * *** * * ** * * *** * * ** * *** * *
consensus_2918#0 CCGTAGTAATGGCACCAAAG-ATACTGACAGTTGGGATATGCAGCACCTGGAGTATGATC 593
consensus_2918#1 AT-TGATACTGCAGATGCAGCACAGTTACAGCCGCAGCCAGCTATACC--GAACAAGCCC 382
* ** ** ** * * * **** * ** *** ** * * *
consensus_2918#0 ACCCTGGTCTAATGCTGCTACCATATGATGATGACATAGAGGAGGCATACGATGTACTAG 653
consensus_2918#1 ATCAGTTCCTTTGGCACCAACCATCAGTTCCTTTGGCACACTCCACAGAGAATCCCCTGG 442
* * ** ** * ***** * * * * * ** * ** ** *
consensus_2918#0 G-ACAATATGATGTTGTAATGAAAAATGATCTAGCGAGTGGTGATGTTGATGGTTCTGCT 712
consensus_2918#1 ACAGGAAGCGGAGAGCCGAT-AGGGAGGAGTCAGAGAGAGGGGTTGTTG-----TCCCTT 496
* * * * ** * * ** ** *** ** * ***** ** *
consensus_2918#0 GCTGGTGTCATAGATGAGAAGCTTTACTCGAATGGAATAGAAGATTTACTCATATTGCCA 772
consensus_2918#1 CCCTTCATCAGTGAGCTGAGCCTGAGCCCC--CGCTACATGTGGTTCCTTCCGCCTGTAA 554
* *** ** ** ** * * * * * * ** ** ** *
consensus_2918#0 AGAGGCCAGAATAGCATTCATGACGAGAAGAATAAGCTGACGATCGATCAAGAGTTTGAG 832
consensus_2918#1 A------ATAACGACATATAGTATGTGCCTGCCTGCCCCTCG--CCATCCCCATTTCCTC 606
* * ** *** * * * * * ** * *** * **
consensus_2918#0 CAGTATTTTACAAGGCTCATGCTTTAGCATTGATGATGTCATAAATCTCCGCTCTGTTCA 892
consensus_2918#1 CACCTTCCTACTACAGC--TGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGG-CG 663
** * *** * ****** ** *** * * * ** ** * * *
consensus_2918#0 ACATCGGAAGACGCTTTGCTCCCTGCAGTCAGTGTGTGATTTGAGCTTAGCCCTGCACGA 952
consensus_2918#1 GCA--AGATGATGGGT-GAAGGCGGCGG-CGGCGGCGGAGTCGGCTTCTACCA---ACGA 716
** ** ** * * * * ** * * * * ** * * * ** ****
consensus_2918#0 GCGAATGC-GAGTGTTAGCTGCTA--TAGGAG--CTAGGTGCCTATTTTTGTACATCTTC 1007
consensus_2918#1 ACGCACCCAGAGCTTCAGCGGCTGGTTAGTAGTACTCAGAATACATCTTTCCCCCTCGCT 776
** * * *** * *** *** *** ** ** * ** *** * **
consensus_2918#0 TTCACTGCTATGTATATATGTCTTCTGAGTTCTGAACGGACTAATGTACTCCTCTG 1063
consensus_2918#1 TCTGCTGGTAGCTCTACATGNC---------------------------------- 798
* *** ** * ** *** *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||