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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence
[TGTGGCTTTCTAGTTCTTGGGCCACTGTTTTGTTTTTCCACATAGCAAGCTTGTATAGGGAAGGAGATAGATCTTTGGGGGATTGGCCATCAAGCCATCTGTCGTGCCAGAACTTTGTCTTGCCCCCATTGCCTAGTGTGATGATTGTAGAGGCCCTGAAGAGTTGCTTGTCCGTTTCATCGCATGGTAGGGTGGAGCCTTGCCATGGTTTCTGAAAGGACCTTAATGTCGCCTAGAGGGGGGGTGAATAGGTGTTCCTAAAAATTATCACAACTTCATAGCACATTAGAGTGATGATAACTTTTGATTCAAATCGAAACTTCCGGTATGGGATTGGAAGTTCCGGTCTCAATCGAAAAGTTCGGCGGATAACGGAATAAACACTAGCTATGAACTTGTAGCTCAAACAAACAAAATGTATATGAATCAAAAGGTGACAAATAAGGTATCTAAGCAAGATATAAGGTCACCAACTAAATCAAATAAGCATGCAAGTAGATCGGGTAAAAACAAGCTCAAGCACAATATGAGAGAATGCAAGAACGGGCAAACCAAGAGGGGAGACGCGCGATTTGTTTCCCGAAGTTCGAATCCACGGATCCTACGTCTCCGTTGAGGAGCCACAAGGGCCGGGCCTATTTCAACCCTTTTCTCACGAGGTTGCACAAATGCACTCCTCGGTTTCACTCTTGATTTCTTCCCTTGCGGAGGCGAAATCGAAGCCTTCACAAACTTTCCGTGGCACACCACAACCTTGGGTGCTCACCGGCAACGCCTAGCCGTCTAGGAGACCTTAGTCCCCAGAGTAACAAACACAATCGAAGAT]
[+] EMBL CB649495 [TGTGGCTTTCTAGTTCTTGGGCCACTGTTTTGTTTTTCCACATAGCAAGCTTGTATAGGGAAGGAGATAGATCTTTGGGGGATTGGCCATCAAGCCATCTGTCGTGCCAGAACTTTGTCTTGCCCCCATTGCCTAGTGTGATGATTGTAGAGGCCCTGAAGAGTTGCTTGTCCGTTTCATCGCATGGTAGGGTGGAGCCTTGCCATGGTTTCTGAAAGGACCTTAATGTCGCCTAGAGGGGGGGTGAATAGGTGTTCCTAAAAATTATCACAACTTCATAGCACATTAGAGTGATGATAACTTTTGATTCAAATCGAAACTTCCGGTATGGGATTGGAAGTTCCGGTCTCAATCGAAAAGTTCGGCGGATAACGGAATAAACACTAGCTATGAACTTGTAGCTCAAACAAACAAAATGTATATGAATCAAAAGGTGACAAATAAGGTATCTAAGCAAGATATAAGGTCACCAACTAAATCAAATAAGCATGCAAGTAGATCGGGTAAAAACAAGCTCAAGCACAATATGAGAGAATGCAAGAACGGGCAAACCAAGAGGGGAGACGCGCGATTTGTTTCCCGAAGTTCGAATCCACGGATCCTACGTCTCCGTTGAGGAGCCACAAGGGCCGGGCCTATTTCAACCCTTTTCTCACGAGGTTGCACAAATGCACTCCTCGGTTTCACTCTTGATTTCTTCCCTTGCGGAGGCGAAATCGAAGCCTTCACAAACTTTCCGTGGCACACCACAACCTTGGGTGCTCACCGGCAACGCCTAGCCGTCTAGGAGACCTTAGTCCCCAGAGTAACAAACACAATCGAAGAT]
consensusID : consensus_292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence
[TCCTTTTTTCCCTCCTCCCTCTCTCCCCACCACCACTTCTTCTCTACCCGGCGGCGCCAATCCGAGCCGCACTGCTCCTCCTCTCCTCCCTCAACCCCCGCCACCACTCCTGCTTCTCCTCCTCCGCGTCACACCGGATCCGGCCGCTTGGAGGTCGGGGCCGCCAGATCCAGCCACCACGCGCGGCAGCAGCGCCCCTCCTCCTTTGCGTCACGCCGGATCCGGCCACCACGTGCAGCAGCAGCTCCTCCTCCGGCCTTCTTCCGGCAGCAGCACCACGGCAACAGCTCCTCCTCTGGTCTTCCTCCAGCAGCAGTGCAAAGCCAAGGTCTGCATGGTGGGGTTCTAAATGGGGTTGGGAAGGGCGTGGAGACGAACACCGCCAAGGTGGAGGAGGCAGTCGGCGACGACCTCCAAGGGCTCCTCCTAAAGGAATAAAACGCTAGCTATGAACTTGTAGCTTGAACAAACAAAATGTATATGAATCAAAAGGTCACAAACAAGGTA]
[+] EMBL AK105177 [TCCTTTTTTCCCTCCTCCCTCTCTCCCCACCACCACTTCTTCTCTACCCGGCGGCGCCAATCCGAGCCGCACTGCTCCTCCTCTCCTCCCTCAACCCCCGCCACCACTCCTGCTTCTCCTCCTCCGCGTCACACCGGATCCGGCCGCTTGGAGGTCGGGGCCGCCAGATCCAGCCACCACGCGCGGCAGCAGCGCCCCTCCTCCTTTGCGTCACGCCGGATCCGGCCACCACGTGCAGCAGCAGCTCCTCCTCCGGCCTTCTTCCGGCAGCAGCACCACGGCAACAGCTCCTCCTCTGGTCTTCCTCCAGCAGCAGTGCAAAGCCAAGGTCTGCATGGTGGGGTTCTAAATGGGGTTGGGAAGGGCGTGGAGACGAACACCGCCAAGGTGGAGGAGGCAGTCGGCGACGACCTCCAAGGGCTCCTCCTAAAGGAATAAAACGCTAGCTATGAACTTGTAGCTTGAACAAACAAAATGTATATGAATCAAAAGGTCACAAACAAGGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_292#0 TGTGGCTTTCTAGTTCTTGGGCCACTGTTTTGTTTTTCCACATAGCAAG--CTTGTATAG 58
consensus_292#1 -------------TCCTTTTTTCCCTCCTCCCTCTCTCCCCACCACCACTTCTTCTCTAC 47
* *** * ** * * * *** ** * * *** * **
consensus_292#0 GGAAGGAGATAGATCTTTGGGGGATTGGCCATCAAGCCATCTGTCGTGCCAGAACTTTG- 117
consensus_292#1 CCGGCGGCGCCAATCCGAGCCGCACTGCTCCTCCTCTCCTCCCTCAACCCCCGCCACCAC 107
* *** * * * ** * ** * ** ** ** *
consensus_292#0 TCTTGCCCCCATTGCCTAGTGTGATGATTGTAGAGGCCCTGAAGAGTTGCTTGTCCGTTT 177
consensus_292#1 TCCTGCTTCTCCTCCTCCGCGTCACACCGGATCCGGCCGCTTGGAGGT-CGGGGCCGCCA 166
** *** * * * * ** * * **** *** * * * ***
consensus_292#0 CATCGCATGGTAGGGTGGAGCCTTGCCATGGTTTCTGAAAGGACCTTAATGTCGCCTAGA 237
consensus_292#1 GATCCAGCCACCACGCGCGGCAGCAGCGCCCCTCCT-------CCTTTGCGTCACGCCG- 218
*** * * ** * * ** **** *** * *
consensus_292#0 GGGGGGGTGAATAGGTGTTCCTAAAAATTATCAC---AACTTCATAGCACATTAGAGTGA 294
consensus_292#1 GATCCGGCCACCACGTGCAGCAGCAGCTCCTCCTCCGGCCTTCTTCCGGCAGCAGCACCA 278
* ** * * *** * * * ** **** * ** ** *
consensus_292#0 TGATAACTTTTGATTCAAATCGAAACTTCCGGTATGGGATTGGAAGTTCCGGTCTCAATC 354
consensus_292#1 CGGCAACAGCTCCTCCTCTGGTCTTCCTCCAGCA-GCAGTGCAAAGCCAAGGTCTGCATG 337
* *** * * * * *** * * * * *** ***** **
consensus_292#0 GAAAAGTTCGGCGGATAACGGAATAAACACTAGCTATGAAC-TTGT--AGCTCAAACAAA 411
consensus_292#1 GTGGGGTTCTAAATGGGGTTGGGAAGGGCGTGGAGACGAACACCGCCAAGGTGGAGGAGG 397
* **** * * * * * **** * ** * * *
consensus_292#0 CAAAATGTATATGAATCAAAAGGTGACAAATAAGGTATCTAAGCA--AGATATAAGGTCA 469
consensus_292#1 CAGTCGGCGACGACCTCCAAGGGCTCCTCCTAAAGGAATAAAACGCTAGCTATGAACTTG 457
** * ** ** ** * *** * * ** * ** *** * *
consensus_292#0 CCAACTAAATCAAATAAGCATGCAAGTAGATCGGGTAAAAACAAGCTCAAGCACAATATG 529
consensus_292#1 T-AGCTTGAACAAACAAA-ATGTATATGAATCAAAAGGTCACAAACA-AGGTA------- 507
* ** * **** ** *** * * *** **** * * * *
consensus_292#0 AGAGAATGCAAGAACGGGCAAACCAAGAGGGGAGACGCGCGATTTGTTTCCCGAAGTTCG 589
consensus_292#1 ------------------------------------------------------------
consensus_292#0 AATCCACGGATCCTACGTCTCCGTTGAGGAGCCACAAGGGCCGGGCCTATTTCAACCCTT 649
consensus_292#1 ------------------------------------------------------------
consensus_292#0 TTCTCACGAGGTTGCACAAATGCACTCCTCGGTTTCACTCTTGATTTCTTCCCTTGCGGA 709
consensus_292#1 ------------------------------------------------------------
consensus_292#0 GGCGAAATCGAAGCCTTCACAAACTTTCCGTGGCACACCACAACCTTGGGTGCTCACCGG 769
consensus_292#1 ------------------------------------------------------------
consensus_292#0 CAACGCCTAGCCGTCTAGGAGACCTTAGTCCCCAGAGTAACAAACACAATCGAAGAT 826
consensus_292#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||