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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[GCANNNNGGTTTCCCCNNNTCGAACAGATTTTGAAGAATGTTGAGTGGCCGGATGAGTTCCCATTCAAGGCCGAAGACTTCAGCCGCTTCGATGAATCATCAGACGCTCTGTTCTACTCGGCTCCCCGTTATGTGACTCACATTGATGACCAAGCAATCGAGGCTCTCACGAAATACTACTCAGAAGTTCTTCCTCCAAGCAACACTCCTGGGGTGGCCATCCTGGACATGTGCAGCAGCTGGGTGAGCCATTATCCACCCGGGTACAAACAAGAGAAGATTGTGGGGATGGGTATGAATGAAGATGAATTGAAAAGGAATCCGGTGTTAACAGAGTACGTTGTGCAAGACCTCAATGTGAACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGTTAGTGTAGACTACTTGACAAAGCCAATTGATGTTNNNNNNGAAATGAGACGAATACTTAAACCGAGTGGATTGGCCATAATGAGTTTTNNNNNNCGCTGCNNNNGGNNNNNNNNTATATCTATANNNNNNTCAACNN]
[+] EMBL CF196204 [GCANNNNGGTTTCCCCNNNTCGAACAGATTTTGAAGAATGTTGAGTGGCCGGATGAGTTCCCATTCAAGGCCGAAGACTTCAGCCGCTTCGATGAATCATCAGACGCTCTGTTCTACTCGGCTCCCCGTTATGTGACTCACATTGATGACCAAGCAATCGAGGCTCTCACGAAATACTACTCAGAAGTTCTTCCTCCAAGCAACACTCCTGGGGTGGCCATCCTGGACATGTGCAGCAGCTGGGTGAGCCATTATCCACCCGGGTACAAACAAGAGAAGATTGTGGGGATGGGTATGAATGAAGATGAATTGAAAAGGAATCCGGTGTTAACAGAGTACGTTGTGCAAGACCTCAATGTGAACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGTTAGTGTAGACTACTTGACAAAGCCAATTGATGTTNNNNNNGAAATGAGACGAATACTTAAACCGAGTGGATTGGCCATAATGAGTTTTNNNNNNCGCTGCNNNNGGNNNNNNNNTATATCTATANNNNNNTCAACNN]
consensusID : consensus_2920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[CCATTATCCACCCGGGTACAAACAAGAGAAGATTGTGGGGATGGGTATGAATGAAGATGAATTGAAAAGGAATCCGGTGTTAACAGAGTACGTTGTGCAAGACCTCAATGTGAACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGTTAGTGTAGACTACTTGACAAAGCCAATTGATGTTTTCAAGGAAATGAGACGAATACTTAAACCGAGTGGATTGGCCATAATGAGTTTTTCAAATCGCTGCTTTTGGACAAAGGCTATATCTATATGGACGTCAACCGGTGATGCTGATCACGCTTGGATAGTTGGGGCTTACTTCCATTATGCTGGAGATTTTGAATCTCCTGAGGCTATTGATATATCTCCTAATCCTGGACGACGAACAGACCCGATGTATGTTGTCCAGTCCAGAAAGAGAATAGCTTGATTAATATCATAGGTTCTATACAGATTTTGTGTAATGCACAACGTGATGGCTATTTTTCTACTGGTCACTTTCGAAACGTAAATATGCAGACAGATCTGG]
[+] EMBL CA764519 [CCATTATCCACCCGGGTACAAACAAGAGAAGATTGTGGGGATGGGTATGAATGAAGATGAATTGAAAAGGAATCCGGTGTTAACAGAGTACGTTGTGCAAGACCTCAATGTGAACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGTTAGTGTAGACTACTTGACAAAGCCAATTGATGTTTTCAAGGAAATGAGACGAATACTTAAACCGAGTGGATTGGCCATAATGAGTTTTTCAAATCGCTGCTTTTGGACAAAGGCTATATCTATATGGACGTCAACCGGTGATGCTGATCACGCTTGGATAGTTGGGGCTTACTTCCATTATGCTGGAGATTTTGAATCTCCTGAGGCTATTGATATATCTCCTAATCCTGGACGACGAACAGACCCGATGTATGTTGTCCAGTCCAGAAAGAGAATAGCTTGATTAATATCATAGGTTCTATACAGATTTTGTGTAATGCACAACGTGATGGCTATTTTTCTACTGGTCACTTTCGAAACGTAAATATGCAGACAGATCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2920#0 GCANNNNGGTTTCCCCNNNTCGAACAGATTTTGAAGAATGTTGAGTGGCCGGATGAGTTC 60
consensus_2920#1 ------------------------------------------------------------
consensus_2920#0 CCATTCAAGGCCGAAGACTTCAGCCGCTTCGATGAATCATCAGACGCTCTGTTCTACTCG 120
consensus_2920#1 ------------------------------------------------------------
consensus_2920#0 GCTCCCCGTTATGTGACTCACATTGATGACCAAGCAATCGAGGCTCTCACGAAATACTAC 180
consensus_2920#1 ------------------------------------------------------------
consensus_2920#0 TCAGAAGTTCTTCCTCCAAGCAACACTCCTGGGGTGGCCATCCTGGACATGTGCAGCAGC 240
consensus_2920#1 ------------------------------------------------------------
consensus_2920#0 TGGGTGAGCCATTATCCACCCGGGTACAAACAAGAGAAGATTGTGGGGATGGGTATGAAT 300
consensus_2920#1 --------CCATTATCCACCCGGGTACAAACAAGAGAAGATTGTGGGGATGGGTATGAAT 52
****************************************************
consensus_2920#0 GAAGATGAATTGAAAAGGAATCCGGTGTTAACAGAGTACGTTGTGCAAGACCTCAATGTG 360
consensus_2920#1 GAAGATGAATTGAAAAGGAATCCGGTGTTAACAGAGTACGTTGTGCAAGACCTCAATGTG 112
************************************************************
consensus_2920#0 AACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGTTAGTGTA 420
consensus_2920#1 AACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGTTAGTGTA 172
************************************************************
consensus_2920#0 GACTACTTGACAAAGCCAATTGATGTTNNNNNNGAAATGAGACGAATACTTAAACCGAGT 480
consensus_2920#1 GACTACTTGACAAAGCCAATTGATGTTTTCAAGGAAATGAGACGAATACTTAAACCGAGT 232
*************************** ***************************
consensus_2920#0 GGATTGGCCATAATGAGTTTTNNNNNNCGCTGCNNNNGGNNNNNNNNTATATCTATANNN 540
consensus_2920#1 GGATTGGCCATAATGAGTTTTTCAAATCGCTGCTTTTGGACAAAGGCTATATCTATATGG 292
********************* ****** ** **********
consensus_2920#0 NNNTCAACNN-------------------------------------------------- 550
consensus_2920#1 ACGTCAACCGGTGATGCTGATCACGCTTGGATAGTTGGGGCTTACTTCCATTATGCTGGA 352
*****
consensus_2920#0 ------------------------------------------------------------
consensus_2920#1 GATTTTGAATCTCCTGAGGCTATTGATATATCTCCTAATCCTGGACGACGAACAGACCCG 412
consensus_2920#0 ------------------------------------------------------------
consensus_2920#1 ATGTATGTTGTCCAGTCCAGAAAGAGAATAGCTTGATTAATATCATAGGTTCTATACAGA 472
consensus_2920#0 ------------------------------------------------------------
consensus_2920#1 TTTTGTGTAATGCACAACGTGATGGCTATTTTTCTACTGGTCACTTTCGAAACGTAAATA 532
consensus_2920#0 ---------------
consensus_2920#1 TGCAGACAGATCTGG 547
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||