These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2925#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1135 fasta sequence [ATCAACACCGCCTGACTCATCCAGTGTGAGGCCGTGAGGGTGAGTGAACCCTGTAGCGGCAGTCATGAAGGAGAGGGTGAGGCGGCGGCGCATCCCGGCGTTCGGGGAGTGGAACTACGACGGCGACGGCGACCTTGGCGGTGGCGGCGGCTGCTATGGCTACGGCTACCGCGACGGCGACTGGCCGGTCACACAGTACTTCGACTCCGCCATGCAGGCCCGCGGCCTGGTCATCTCCCTGCCGCCCTCACCAAAACCACCCAAGAAGGCGGTGAAGTGGATTGACAGCGGCGCACTTGGGGAGGAGGAGGTGGTGGACGAGAAGCAGAGGCAGAGGCAGCACAAGGTGGTGGTGGGGCTGGCGGTGGCAGGAGGAGAGCACGGGGCGGCGAGGAAGCAGGGGAAGCAGAGCAGAGTGGCTGACGGCGGGGCCCATGCGGCGATGGGCTACAAGGGGTGCAGGCCGGCGGTGGTCAAGGCCGTGGACCGGGACCTCTACGAGATCCCACCCGACATGCTCTGCAACAAGCCAAGGAAGAGGGTGACCAGGAGCCTGTGGATGGGGTGCCTGGGACTCAGCTGCGTTGCCTAGGGATCTCACCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAGTGAAGCAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGCACGGCCCAAACTTTCCCATTCATCTATCTCCCTCACCTGTCTCAGCAGCACTAGTGTTTGGTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGATGGACATGGACATGATGTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTCTCTCTCTCTCTCTCTCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTTTGTAGCCTCTGCTTGGTTGGTGTCCCATGAAATTACGGAGGCAGCTCGGTGAAATGTGGTTATATGGGTTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGCAGTGGAAAAAGGTTGATGTAATGGAACGCTGTAGTCTCAGCTCAGGGGACTTGTGCCGCCCGTGGTGAAAAGAAAGAAAGGAAGAAAG] [+] EMBL AK106317 [ATCAACACCGCCTGACTCATCCAGTGTGAGGCCGTGAGGGTGAGTGAACCCTGTAGCGGCAGTCATGAAGGAGAGGGTGAGGCGGCGGCGCATCCCGGCGTTCGGGGAGTGGAACTACGACGGCGACGGCGACCTTGGCGGTGGCGGCGGCTGCTATGGCTACGGCTACCGCGACGGCGACTGGCCGGTCACACAGTACTTCGACTCCGCCATGCAGGCCCGCGGCCTGGTCATCTCCCTGCCGCCCTCACCAAAACCACCCAAGAAGGCGGTGAAGTGGATTGACAGCGGCGCACTTGGGGAGGAGGAGGTGGTGGACGAGAAGCAGAGGCAGAGGCAGCACAAGGTGGTGGTGGGGCTGGCGGTGGCAGGAGGAGAGCACGGGGCGGCGAGGAAGCAGGGGAAGCAGAGCAGAGTGGCTGACGGCGGGGCCCATGCGGCGATGGGCTACAAGGGGTGCAGGCCGGCGGTGGTCAAGGCCGTGGACCGGGACCTCTACGAGATCCCACCCGACATGCTCTGCAACAAGCCAAGGAAGAGGGTGACCAGGAGCCTGTGGATGGGGTGCCTGGGACTCAGCTGCGTTGCCTAGGGATCTCACCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAGTGAAGCAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGCACGGCCCAAACTTTCCCATTCATCTATCTCCCTCACCTGTCTCAGCAGCACTAGTGTTTGGTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGATGGACATGGACATGATGTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTCTCTCTCTCTCTCTCTCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTTTGTAGCCTCTGCTTGGTTGGTGTCCCATGAAATTACGGAGGCAGCTCGGTGAAATGTGGTTATATGGGTTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGCAGTGGAAAAAGGTTGATGTAATGGAACGCTGTAGTCTCAGCTCAGGGGACTTGTGCCGCCCGTGGTGAAAAGAAAGAAAGGAAGAAAG] consensusID : consensus_2925#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [GGGGTGCAGGCCGGCGGTGGTCAAGGCCGTGGACCGGGACCTCTACGAGATCCCACCCGACATGCTCTGCAACAAGCCAAGGAAGAGGGTGACGAGGAGCCTGTGGATGGGGTGCCTGGGACTCAGCTGCGTTGCCTAGGGATCTCACCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAGTGAAGCAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGCACGGCCCAAACTTTCCCATTCATCTATCTCTCTCACCTGTCTCAGCAGCACTAGTGTTTGGTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGATGGACATGGACATGATGTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTTTCTCTCTCTCTCTCTCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTTGTAGCCTCTGCTTGGTTGGTGTCCCATGAAATTACGGAGGCAGCTCGGTGAAATGTGGTTATATGGGAAATGTGGTTATATGGGGTTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGCAGTGGAAAAAGGNTGATGTAATGGAACGCTGTAGTCTCAGCTCAAGGGACTTGNGCCGNCCGNGGTGAAAAGAAAGAAAGGAAGAAGCTTTCTGGT] [+] EMBL CA764533 [GGGGTGCAGGCCGGCGGTGGTCAAGGCCGTGGACCGGGACCTCTACGAGATCCCACCCGACATGCTCTGCAACAAGCCAAGGAAGAGGGTGACGAGGAGCCTGTGGATGGGGTGCCTGGGACTCAGCTGCGTTGCCTAGGGATCTCACCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAGTGAAGCAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGCACGGCCCAAACTTTCCCATTCATCTATCTCTCTCACCTGTCTCAGCAGCACTAGTGTTTGGTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGATGGACATGGACATGATGTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTTTCTCTCTCTCTCTCTCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTTGTAGCCTCTGCTTGGTTGGTGTCCCATGAAATTACGGAGGCAGCTCGGTGAAATGTGGTTATATGGGAAATGTGGTTATATGGGGTTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGCAGTGGAAAAAGGNTGATGTAATGGAACGCTGTAGTCTCAGCTCAAGGGACTTGNGCCGNCCGNGGTGAAAAGAAAGAAAGGAAGAAGCTTTCTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2925#0 ATCAACACCGCCTGACTCATCCAGTGTGAGGCCGTGAGGGTGAGTGAACCCTGTAGCGGC 60 consensus_2925#1 ------------------------------------------------------------ consensus_2925#0 AGTCATGAAGGAGAGGGTGAGGCGGCGGCGCATCCCGGCGTTCGGGGAGTGGAACTACGA 120 consensus_2925#1 ------------------------------------------------------------ consensus_2925#0 CGGCGACGGCGACCTTGGCGGTGGCGGCGGCTGCTATGGCTACGGCTACCGCGACGGCGA 180 consensus_2925#1 ------------------------------------------------------------ consensus_2925#0 CTGGCCGGTCACACAGTACTTCGACTCCGCCATGCAGGCCCGCGGCCTGGTCATCTCCCT 240 consensus_2925#1 ------------------------------------------------------------ consensus_2925#0 GCCGCCCTCACCAAAACCACCCAAGAAGGCGGTGAAGTGGATTGACAGCGGCGCACTTGG 300 consensus_2925#1 ------------------------------------------------------------ consensus_2925#0 GGAGGAGGAGGTGGTGGACGAGAAGCAGAGGCAGAGGCAGCACAAGGTGGTGGTGGGGCT 360 consensus_2925#1 ------------------------------------------------------------ consensus_2925#0 GGCGGTGGCAGGAGGAGAGCACGGGGCGGCGAGGAAGCAGGGGAAGCAGAGCAGAGTGGC 420 consensus_2925#1 ------------------------------------------------------------ consensus_2925#0 TGACGGCGGGGCCCATGCGGCGATGGGCTACAAGGGGTGCAGGCCGGCGGTGGTCAAGGC 480 consensus_2925#1 ---------------------------------GGGGTGCAGGCCGGCGGTGGTCAAGGC 27 *************************** consensus_2925#0 CGTGGACCGGGACCTCTACGAGATCCCACCCGACATGCTCTGCAACAAGCCAAGGAAGAG 540 consensus_2925#1 CGTGGACCGGGACCTCTACGAGATCCCACCCGACATGCTCTGCAACAAGCCAAGGAAGAG 87 ************************************************************ consensus_2925#0 GGTGACCAGGAGCCTGTGGATGGGGTGCCTGGGACTCAGCTGCGTTGCCTAGGGATCTCA 600 consensus_2925#1 GGTGACGAGGAGCCTGTGGATGGGGTGCCTGGGACTCAGCTGCGTTGCCTAGGGATCTCA 147 ****** ***************************************************** consensus_2925#0 CCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAG 660 consensus_2925#1 CCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAG 207 ************************************************************ consensus_2925#0 TGAAGCAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGC 720 consensus_2925#1 TGAAGCAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGC 267 ************************************************************ consensus_2925#0 ACGGCCCAAACTTTCCCATTCATCTATCTCCCTCACCTGTCTCAGCAGCACTAGTGTTTG 780 consensus_2925#1 ACGGCCCAAACTTTCCCATTCATCTATCTCTCTCACCTGTCTCAGCAGCACTAGTGTTTG 327 ****************************** ***************************** consensus_2925#0 GTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGATGGACATGGACATGAT 840 consensus_2925#1 GTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGATGGACATGGACATGAT 387 ************************************************************ consensus_2925#0 GTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTCTCTCTCTCT 900 consensus_2925#1 GTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTTTCTCTCTCT 447 ************************************************** ********* consensus_2925#0 CTCTCTCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTTTGTAGCCTCTGCTTGGTT 960 consensus_2925#1 CTCTCTCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTT-GTAGCCTCTGCTTGGTT 506 ****************************************** ***************** consensus_2925#0 GGTGTCCCATGAAATTACGGAGGCAGCTCGGTGAAATGTGGTTATATGGG---------- 1010 consensus_2925#1 GGTGTCCCATGAAATTACGGAGGCAGCTCGGTGAAATGTGGTTATATGGGAAATGTGGTT 566 ************************************************** consensus_2925#0 --------TTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGCAGTGGAAAAAGGTTG 1062 consensus_2925#1 ATATGGGGTTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGCAGTGGAAAAAGGNTG 626 ************************************************* ** consensus_2925#0 ATGTAATGGAACGCTGTAGTCTCAGCTCAGGGGACTTGTGCCGCCCGTGGTGAAAAGAAA 1122 consensus_2925#1 ATGTAATGGAACGCTGTAGTCTCAGCTCAAGGGACTTGNGCCGNCCGNGGTGAAAAGAAA 686 ***************************** ******** **** *** ************ consensus_2925#0 GAAAGGAAGAAAG-------- 1135 consensus_2925#1 GAAAGGAAGAAGCTTTCTGGT 707 *********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||