These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [ACGAATCATCCAGCTGTCCAACATAAAATCATTTCAGTCATTGGAAATCTGCCATTCTTTTTCTTTTTCTGAGAAAGGCATTTGACGTTCTTAAGAATATTACTCTTTCTTATCCACTTTGCATGTTCATGCTTCTCTAAATCCATGGTTGGTTTGTGTATGTGTTTCTAGACTCCCTTTAACCTTTGAGTGTGGAACTCTTTCATAGAAAAGAATGTAGGCCTCACATTTTAATACATTTTCGAACAGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCACTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCGCCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTGTCCAGATATCTGAACATCAGAGAAATGAATAATGGTTAAAAATATTTTTTTTTGAAGAAGTTATCACCAAAGTTATTGGCACTATGATCTTATCGTGTATCATATTGGATCAGTATTGAAAAAATATGAGCTATGTTATATTCAACTAAGTAGAAGTATTAATACCCTGGTGTCCATATATTTGGTTA] [+] EMBL CF307191 [ACGAATCATCCAGCTGTCCAACATAAAATCATTTCAGTCATTGGAAATCTGCCATTCTTTTTCTTTTTCTGAGAAAGGCATTTGACGTTCTTAAGAATATTACTCTTTCTTATCCACTTTGCATGTTCATGCTTCTCTAAATCCATGGTTGGTTTGTGTATGTGTTTCTAGACTCCCTTTAACCTTTGAGTGTGGAACTCTTTCATAGAAAAGAATGTAGGCCTCACATTTTAATACATTTTCGAACAGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCACTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCGCCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTGTCCAGATATCTGAACATCAGAGAAATGAATAATGGTTAAAAATATTTTTTTTTGAAGAAGTTATCACCAAAGTTATTGGCACTATGATCTTATCGTGTATCATATTGGATCAGTATTGAAAAAATATGAGCTATGTTATATTCAACTAAGTAGAAGTATTAATACCCTGGTGTCCATATATTTGGTTA] consensusID : consensus_2928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [AGTTGTTCACCGGTTGCTGGCCGTGGCCTTCCCGCCGGAGGAGGAGGAGGNGATGGGCCATCCGGCGGCGGGGCGGGAGGAGCGTCGGCGGAGACCCATGGCGTCGCGGGCTGCCCGCCGCGGAGATCACTGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCACTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCGCCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTGTCCAGATATCTGAACATCAGAGAAATGAATAATNGGTTAAAAATATTTTTTTTTTGGAAAAAAA] [+] EMBL AU161975 [AGTTGTTCACCGGTTGCTGGCCGTGGCCTTCCCGCCGGAGGAGGAGGAGGNGATGGGCCATCCGGCGGCGGGGCGGGAGGAGCGTCGGCGGAGACCCATGGCGTCGCGGGCTGCCCGCCGCGGAGATCACTGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCACTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCGCCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTGTCCAGATATCTGAACATCAGAGAAATGAATAATNGGTTAAAAATATTTTTTTTTTGGAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2928#0 ACGAATCATCCAGCTGTCCAACATAAAATCATTTCAGTCATTGGAAATCTGCCATTCTTT 60 consensus_2928#1 ------------------------------------------------------------ consensus_2928#0 TTCTTTTTCTGAGAAAGGCATTTGACGTTCTTAAGAATATTACTCTTTCTTATCCACT-- 118 consensus_2928#1 -----------------------------------------------AGTTGTTCACCGG 13 ** * *** consensus_2928#0 TTGCATGTTCATGCTTCTCTAAATCCATGGTTGGTTTGTGTATGTGTTTCTAGACTCCCT 178 consensus_2928#1 TTGC-TGGCCGTGGCCTTCCCG-CCGGAGGAGGAGGAGGNGATGGG----------CCAT 61 **** ** * ** ** * ** * * *** * ** * consensus_2928#0 TTAACCTTTGAGTGTGGAACTCTTTCATAGAAAAGAATGTAGGCCTCACATTTTAATACA 238 consensus_2928#1 CCGGCGGCGGGGCGGGAGGAGCGTCGGCGGAGACCCATGGCGTCGCGGGCTGCCCGCCGC 121 * * * * * * * ** * *** * * * consensus_2928#0 TTTTCGAACAGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCA 298 consensus_2928#1 GGAGATCACTGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCA 181 ** ************************************************** consensus_2928#0 CTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCG 358 consensus_2928#1 CTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCG 241 ************************************************************ consensus_2928#0 CCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTG 418 consensus_2928#1 CCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTG 301 ************************************************************ consensus_2928#0 TCCAGATATCTGAACATCAGAGAAATGAATAATGG-TTAAAAATATTTTTTTTTGAAGAA 477 consensus_2928#1 TCCAGATATCTGAACATCAGAGAAATGAATAATNGGTTAAAAATATTTTTTTTTTGGAAA 361 ********************************* * ****************** ** consensus_2928#0 GTTATCACCAAAGTTATTGGCACTATGATCTTATCGTGTATCATATTGGATCAGTATTGA 537 consensus_2928#1 AAAA-------------------------------------------------------- 365 * consensus_2928#0 AAAAATATGAGCTATGTTATATTCAACTAAGTAGAAGTATTAATACCCTGGTGTCCATAT 597 consensus_2928#1 ------------------------------------------------------------ consensus_2928#0 ATTTGGTTA 606 consensus_2928#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||