cluster # 293

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Oryza sativa
cluster # 293 cluster # 293 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_293#0 length = 367 sequences # 1

consensus_293#1 length = 218 sequences # 1

consensusID : consensus_293#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [TATATTAAAAACGGGATGGATTAATACATATCGGATGGTTAATCAAACGATGATACGAAATACATATATATAGCTAGCAAAACGTCCATCAATCCATCGTAAATACATGTTTTACAATCTGATTAATTAATTAGCACGGAAAATAATGTCAAAACGATGCTCTCTCTTGCATCTTGTTCCATCCCGTTATAGGTCGTAGTCGCCCATGCATTAGCATTGCATGCTACGATCGATCAATGGAGGTAGTAGGCGAGGAAGGAGCAGGCGACGATGGCGGCGAGGGGCGGCGCGGCCGCCACGACGGCGGCTGCCGAGGTGGCGGCCGCGGCGCCGCCGGCAGCGGCGCCACCGGCGGCGGCGGCCTCGC]

[+] EMBL AU225226             [TATATTAAAAACGGGATGGATTAATACATATCGGATGGTTAATCAAACGATGATACGAAATACATATATATAGCTAGCAAAACGTCCATCAATCCATCGTAAATACATGTTTTACAATCTGATTAATTAATTAGCACGGAAAATAATGTCAAAACGATGCTCTCTCTTGCATCTTGTTCCATCCCGTTATAGGTCGTAGTCGCCCATGCATTAGCATTGCATGCTACGATCGATCAATGGAGGTAGTAGGCGAGGAAGGAGCAGGCGACGATGGCGGCGAGGGGCGGCGCGGCCGCCACGACGGCGGCTGCCGAGGTGGCGGCCGCGGCGCCGCCGGCAGCGGCGCCACCGGCGGCGGCGGCCTCGC]




>consensus_293#0
TATATTAAAAACGGGATGGATTAATACATATCGGATGGTTAATCAAACGATGATACGAAA
TACATATATATAGCTAGCAAAACGTCCATCAATCCATCGTAAATACATGTTTTACAATCT
GATTAATTAATTAGCACGGAAAATAATGTCAAAACGATGCTCTCTCTTGCATCTTGTTCC
ATCCCGTTATAGGTCGTAGTCGCCCATGCATTAGCATTGCATGCTACGATCGATCAATGG
AGGTAGTAGGCGAGGAAGGAGCAGGCGACGATGGCGGCGAGGGGCGGCGCGGCCGCCACG
ACGGCGGCTGCCGAGGTGGCGGCCGCGGCGCCGCCGGCAGCGGCGCCACCGGCGGCGGCG
GCCTCGC

consensusID : consensus_293#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 218
fasta sequence

                              [TTTTTTTTTTTTATTAAAAAGGGATGGATTAATACATTTCGGATGGTTAATCAAACGATGATACGAAATACATATATACGAAATACATATATATAGCTAGCAAAACGTCCATCAATCCATCGTAAATACATGTTTTACAATCTGATTAATTAATTAGCACGGAAAATAATGTCAAAACGATGCTCTCTCTTGCATCTTGTTCCCCCCTTGTCTCGTCC]

[+] EMBL CA761171             [TTTTTTTTTTTTATTAAAAAGGGATGGATTAATACATTTCGGATGGTTAATCAAACGATGATACGAAATACATATATACGAAATACATATATATAGCTAGCAAAACGTCCATCAATCCATCGTAAATACATGTTTTACAATCTGATTAATTAATTAGCACGGAAAATAATGTCAAAACGATGCTCTCTCTTGCATCTTGTTCCCCCCTTGTCTCGTCC]




>consensus_293#1
TTTTTTTTTTTTATTAAAAAGGGATGGATTAATACATTTCGGATGGTTAATCAAACGATG
ATACGAAATACATATATACGAAATACATATATATAGCTAGCAAAACGTCCATCAATCCAT
CGTAAATACATGTTTTACAATCTGATTAATTAATTAGCACGGAAAATAATGTCAAAACGA
TGCTCTCTCTTGCATCTTGTTCCCCCCTTGTCTCGTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_293#0      ---------TATATTAAAAACGGGATGGATTAATACATATCGGATGGTTAATCAAACGAT 51
consensus_293#1      TTTTTTTTTTTTATTAAAAA-GGGATGGATTAATACATTTCGGATGGTTAATCAAACGAT 59
                              * ********* ***************** *********************

consensus_293#0      GATACGAAATACATATATA---------------TAGCTAGCAAAACGTCCATCAATCCA 96
consensus_293#1      GATACGAAATACATATATACGAAATACATATATATAGCTAGCAAAACGTCCATCAATCCA 119
                     *******************               **************************

consensus_293#0      TCGTAAATACATGTTTTACAATCTGATTAATTAATTAGCACGGAAAATAATGTCAAAACG 156
consensus_293#1      TCGTAAATACATGTTTTACAATCTGATTAATTAATTAGCACGGAAAATAATGTCAAAACG 179
                     ************************************************************

consensus_293#0      ATGCTCTCTCTTGCATCTTGTTCCATCCCGTTATAGGTCGTAGTCGCCCATGCATTAGCA 216
consensus_293#1      ATGCTCTCTCTTGCATCTTGTTCCCCCCTTGTCTCGTCC--------------------- 218
                     ************************  **   * * *  *                     

consensus_293#0      TTGCATGCTACGATCGATCAATGGAGGTAGTAGGCGAGGAAGGAGCAGGCGACGATGGCG 276
consensus_293#1      ------------------------------------------------------------
                                                                                 

consensus_293#0      GCGAGGGGCGGCGCGGCCGCCACGACGGCGGCTGCCGAGGTGGCGGCCGCGGCGCCGCCG 336
consensus_293#1      ------------------------------------------------------------
                                                                                 

consensus_293#0      GCAGCGGCGCCACCGGCGGCGGCGGCCTCGC 367
consensus_293#1      -------------------------------