These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1683 fasta sequence [TAGAGTCCCAGCTCTCGCAGCTGCAAGACGAGCTCAAGAAAGCCAAGGAGCAGCTGCTCTCCACCGAGCACTCCAAGCGGCGCGCCCTGCAGGAGGCCGAGGACGCCAGGGCGCAGGCGGCGGCGGCGTCCGCGCAGGTCAGGGACTCCGAGGCGCAGCTCGCCGAGCTCTCCTCCGCCGAGGAGAGCCGCCTCCTCGAGCTTCGCCGGCTGTCCCAGGAGCGCGACCGCTCGTGGCAGTCGGAGCTCGAGGCCATGCAGAAGCAGCACGCCGCCGACTCGGCCGCGCTCGTCGCGGCCATGGGCGAGGTGCACCGCCTCCGCGTGCAGCTGGCCGCGGCGGCGCGCGCCGACCGCAAGCAGGACGTGGTGGAGGCGATGGCCACCATCGACGAGCTCAGGGTGAAGCTCAAGGCGAGCGAGGAGGCCGAGGCGCAGGCGCGCGCCTTGCACGAGGAGTGCAAGCAGCAGCTGGAGACGAGCCGTGCCACCATCGACTCGCTGCTCACGGACGGCTCCAAGCTCATGGACTCCTTCAGCCTCGTGGTCAAGGAGCTCGAGGAGTCACGAGCCAAGGTGAAGGCACTCGAGGAGGAGATCGCGGAGACGTCGGCGGCAAAGGCCGGCGAGCGTTGCAACTGCTCGGCGTCGGCGTCGGCATCGGAGGTCGCTGAGCTGAGGTCGGAATTGGAGTCCACGGAGGCCAGGTTCCAAGAAGAGCGCATCCTGAGCACAGTGGAGACGCAGTGCGCCTACGAGCTCATGGACCAGATAAAAATGGAGTCCGACTCGCGGCACGGCAAGCTCGCCGCGGCGCTCGAGAGCACCAAGTCCGAGGTCATCTTCCTCAAGGCGAGCCTCTTCGACAAGGACTCCGAGCTGCGGCGCGCCCTGGACGCGAACGAGAAGCTCCAATCCGAGACGAGAACGGACAACGAGCTGAAGGAGCAGCTGCAGGGCGCGCTCCTGGAGAACGGGCAGCTGAAGCGCGAGCTGCAGCAGCACACCTCCGAGAAGAAGGCCTCGGCGAAGGCGACGGACGCCGCCGACGCGGCGGCGGAGGCGGCGAAGAAGGGGGAGATGGAGGCCGAGCTGAGGCGTCTGCGGGTGCAGGCCGAGCAGTGGAGGAAGGCCGCCGAGACCGCCATGGCGCTGCTCACGGTGGGCAAGGGCGGCAACGGGAAGGTGGTGGACCGGAGCGAGTCGCTTGAAGGAGGCGGCGGCGGCGGCGGCAAGTACGCCGGCCTGTGGGACGAGCTCGACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAGGCGGATCAGCGGCATGTGGAAGAAATGAGGCTGATCAGAATCAAACTGCGCGCGCTATGCGCTAGGGAATTTGCTCATCTTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACAAAAGGAAAAAGGAGAAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATACGTGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGTTTTCGTCAGTTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTGTTCTTCAATCGGCGTGATTCAAACATTTCGGCCCATTTCTCAGTCCTGGGCCCTTTTCTGTCTT] [+] EMBL AK071045 [TAGAGTCCCAGCTCTCGCAGCTGCAAGACGAGCTCAAGAAAGCCAAGGAGCAGCTGCTCTCCACCGAGCACTCCAAGCGGCGCGCCCTGCAGGAGGCCGAGGACGCCAGGGCGCAGGCGGCGGCGGCGTCCGCGCAGGTCAGGGACTCCGAGGCGCAGCTCGCCGAGCTCTCCTCCGCCGAGGAGAGCCGCCTCCTCGAGCTTCGCCGGCTGTCCCAGGAGCGCGACCGCTCGTGGCAGTCGGAGCTCGAGGCCATGCAGAAGCAGCACGCCGCCGACTCGGCCGCGCTCGTCGCGGCCATGGGCGAGGTGCACCGCCTCCGCGTGCAGCTGGCCGCGGCGGCGCGCGCCGACCGCAAGCAGGACGTGGTGGAGGCGATGGCCACCATCGACGAGCTCAGGGTGAAGCTCAAGGCGAGCGAGGAGGCCGAGGCGCAGGCGCGCGCCTTGCACGAGGAGTGCAAGCAGCAGCTGGAGACGAGCCGTGCCACCATCGACTCGCTGCTCACGGACGGCTCCAAGCTCATGGACTCCTTCAGCCTCGTGGTCAAGGAGCTCGAGGAGTCACGAGCCAAGGTGAAGGCACTCGAGGAGGAGATCGCGGAGACGTCGGCGGCAAAGGCCGGCGAGCGTTGCAACTGCTCGGCGTCGGCGTCGGCATCGGAGGTCGCTGAGCTGAGGTCGGAATTGGAGTCCACGGAGGCCAGGTTCCAAGAAGAGCGCATCCTGAGCACAGTGGAGACGCAGTGCGCCTACGAGCTCATGGACCAGATAAAAATGGAGTCCGACTCGCGGCACGGCAAGCTCGCCGCGGCGCTCGAGAGCACCAAGTCCGAGGTCATCTTCCTCAAGGCGAGCCTCTTCGACAAGGACTCCGAGCTGCGGCGCGCCCTGGACGCGAACGAGAAGCTCCAATCCGAGACGAGAACGGACAACGAGCTGAAGGAGCAGCTGCAGGGCGCGCTCCTGGAGAACGGGCAGCTGAAGCGCGAGCTGCAGCAGCACACCTCCGAGAAGAAGGCCTCGGCGAAGGCGACGGACGCCGCCGACGCGGCGGCGGAGGCGGCGAAGAAGGGGGAGATGGAGGCCGAGCTGAGGCGTCTGCGGGTGCAGGCCGAGCAGTGGAGGAAGGCCGCCGAGACCGCCATGGCGCTGCTCACGGTGGGCAAGGGCGGCAACGGGAAGGTGGTGGACCGGAGCGAGTCGCTTGAAGGAGGCGGCGGCGGCGGCGGCAAGTACGCCGGCCTGTGGGACGAGCTCGACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAGGCGGATCAGCGGCATGTGGAAGAAATGAGGCTGATCAGAATCAAACTGCGCGCGCTATGCGCTAGGGAATTTGCTCATCTTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACAAAAGGAAAAAGGAGAAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATACGTGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGTTTTCGTCAGTTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTGTTCTTCAATCGGCGTGATTCAAACATTTCGGCCCATTTCTCAGTCCTGGGCCCTTTTCTGTCTT] consensusID : consensus_2945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [CCCGAGACCGCCCATGGCGCTGCTCACCGGTGGCAAGGCGGCAACGGGAAGTTGGTGGACCGGAGCGAGTCGCTTGAAGGAGGCGCGGCAAGTACGCCGGCCTGTGGGACGAGCTCGACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAGCGGATCAGCGGCATGTGGAAGAAATGAGGCTGATCAGAATCAAACCCCGCGCGCTATGCGCTAGGGAATTTGCTCATCTTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACCAAAGGAAAAAGGAGAAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATACGTGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGTTTTCGTCAATTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTGTTCTTCAATCGGCGTGATTCAACCAAAAAAAAAA] [+] EMBL BI805283 [CCCGAGACCGCCCATGGCGCTGCTCACCGGTGGCAAGGCGGCAACGGGAAGTTGGTGGACCGGAGCGAGTCGCTTGAAGGAGGCGCGGCAAGTACGCCGGCCTGTGGGACGAGCTCGACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAGCGGATCAGCGGCATGTGGAAGAAATGAGGCTGATCAGAATCAAACCCCGCGCGCTATGCGCTAGGGAATTTGCTCATCTTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACCAAAGGAAAAAGGAGAAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATACGTGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGTTTTCGTCAATTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTGTTCTTCAATCGGCGTGATTCAACCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2945#0 TAGAGTCCCAGCTCTCGCAGCTGCAAGACGAGCTCAAGAAAGCCAAGGAGCAGCTGCTCT 60 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 CCACCGAGCACTCCAAGCGGCGCGCCCTGCAGGAGGCCGAGGACGCCAGGGCGCAGGCGG 120 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 CGGCGGCGTCCGCGCAGGTCAGGGACTCCGAGGCGCAGCTCGCCGAGCTCTCCTCCGCCG 180 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 AGGAGAGCCGCCTCCTCGAGCTTCGCCGGCTGTCCCAGGAGCGCGACCGCTCGTGGCAGT 240 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 CGGAGCTCGAGGCCATGCAGAAGCAGCACGCCGCCGACTCGGCCGCGCTCGTCGCGGCCA 300 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 TGGGCGAGGTGCACCGCCTCCGCGTGCAGCTGGCCGCGGCGGCGCGCGCCGACCGCAAGC 360 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 AGGACGTGGTGGAGGCGATGGCCACCATCGACGAGCTCAGGGTGAAGCTCAAGGCGAGCG 420 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 AGGAGGCCGAGGCGCAGGCGCGCGCCTTGCACGAGGAGTGCAAGCAGCAGCTGGAGACGA 480 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 GCCGTGCCACCATCGACTCGCTGCTCACGGACGGCTCCAAGCTCATGGACTCCTTCAGCC 540 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 TCGTGGTCAAGGAGCTCGAGGAGTCACGAGCCAAGGTGAAGGCACTCGAGGAGGAGATCG 600 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 CGGAGACGTCGGCGGCAAAGGCCGGCGAGCGTTGCAACTGCTCGGCGTCGGCGTCGGCAT 660 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 CGGAGGTCGCTGAGCTGAGGTCGGAATTGGAGTCCACGGAGGCCAGGTTCCAAGAAGAGC 720 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 GCATCCTGAGCACAGTGGAGACGCAGTGCGCCTACGAGCTCATGGACCAGATAAAAATGG 780 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 AGTCCGACTCGCGGCACGGCAAGCTCGCCGCGGCGCTCGAGAGCACCAAGTCCGAGGTCA 840 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 TCTTCCTCAAGGCGAGCCTCTTCGACAAGGACTCCGAGCTGCGGCGCGCCCTGGACGCGA 900 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 ACGAGAAGCTCCAATCCGAGACGAGAACGGACAACGAGCTGAAGGAGCAGCTGCAGGGCG 960 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 CGCTCCTGGAGAACGGGCAGCTGAAGCGCGAGCTGCAGCAGCACACCTCCGAGAAGAAGG 1020 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 CCTCGGCGAAGGCGACGGACGCCGCCGACGCGGCGGCGGAGGCGGCGAAGAAGGGGGAGA 1080 consensus_2945#1 ------------------------------------------------------------ consensus_2945#0 TGGAGGCCGAGCTGAGGCGTCTGCGGGTGCAGGCCGAGCAGTGGAGGAAGGCCGCCGAGA 1140 consensus_2945#1 -----------------------------------------------------CCCGAGA 7 ****** consensus_2945#0 CCGCC-ATGGCGCTGCTCACGGTGGGCAAGGGCGGCAACGGGAAGGTGGTGGACCGGAGC 1199 consensus_2945#1 CCGCCCATGGCGCTGCTCACCGGTGGCAAGG-CGGCAACGGGAAGTTGGTGGACCGGAGC 66 ***** ************** * ******* ************* ************** consensus_2945#0 GAGTCGCTTGAAGGAGGCGGCGGCGGCGGCGGCAAGTACGCCGGCCTGTGGGACGAGCTC 1259 consensus_2945#1 GAGTCGCTTGAAGGAGGCG----------CGGCAAGTACGCCGGCCTGTGGGACGAGCTC 116 ******************* ******************************* consensus_2945#0 GACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAGGCGGATCAGCGGCATGTGG 1319 consensus_2945#1 GACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAG-CGGATCAGCGGCATGTGG 175 ***************************************** ****************** consensus_2945#0 AAGAAATGAGGCTGATCAGAATCAAACTGCGCGCGCTATGCGCTAGGGAATTTGCTCATC 1379 consensus_2945#1 AAGAAATGAGGCTGATCAGAATCAAACCCCGCGCGCTATGCGCTAGGGAATTTGCTCATC 235 *************************** ******************************* consensus_2945#0 TTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACAAAAGGAAAAAGGAG 1439 consensus_2945#1 TTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACCAAAGGAAAAAGGAG 295 ********************************************* ************** consensus_2945#0 AAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATAC 1499 consensus_2945#1 AAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATAC 355 ************************************************************ consensus_2945#0 GTGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGT 1559 consensus_2945#1 GTGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGT 415 ************************************************************ consensus_2945#0 TTTCGTCAGTTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTG 1619 consensus_2945#1 TTTCGTCAATTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTG 475 ******** *************************************************** consensus_2945#0 TTCTTCAATCGGCGTGATTCAAACATTTCGGCCCATTTCTCAGTCCTGGGCCCTTTTCTG 1679 consensus_2945#1 TTCTTCAATCGGCGTGATTCAACCAAAAAAAAAA-------------------------- 509 ********************** ** consensus_2945#0 TCTT 1683 consensus_2945#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||