cluster # 2945

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Oryza sativa
cluster # 2945 cluster # 2945 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2945#0 length = 1683 sequences # 1

consensus_2945#1 length = 509 sequences # 1

consensusID : consensus_2945#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1683
fasta sequence

                              [TAGAGTCCCAGCTCTCGCAGCTGCAAGACGAGCTCAAGAAAGCCAAGGAGCAGCTGCTCTCCACCGAGCACTCCAAGCGGCGCGCCCTGCAGGAGGCCGAGGACGCCAGGGCGCAGGCGGCGGCGGCGTCCGCGCAGGTCAGGGACTCCGAGGCGCAGCTCGCCGAGCTCTCCTCCGCCGAGGAGAGCCGCCTCCTCGAGCTTCGCCGGCTGTCCCAGGAGCGCGACCGCTCGTGGCAGTCGGAGCTCGAGGCCATGCAGAAGCAGCACGCCGCCGACTCGGCCGCGCTCGTCGCGGCCATGGGCGAGGTGCACCGCCTCCGCGTGCAGCTGGCCGCGGCGGCGCGCGCCGACCGCAAGCAGGACGTGGTGGAGGCGATGGCCACCATCGACGAGCTCAGGGTGAAGCTCAAGGCGAGCGAGGAGGCCGAGGCGCAGGCGCGCGCCTTGCACGAGGAGTGCAAGCAGCAGCTGGAGACGAGCCGTGCCACCATCGACTCGCTGCTCACGGACGGCTCCAAGCTCATGGACTCCTTCAGCCTCGTGGTCAAGGAGCTCGAGGAGTCACGAGCCAAGGTGAAGGCACTCGAGGAGGAGATCGCGGAGACGTCGGCGGCAAAGGCCGGCGAGCGTTGCAACTGCTCGGCGTCGGCGTCGGCATCGGAGGTCGCTGAGCTGAGGTCGGAATTGGAGTCCACGGAGGCCAGGTTCCAAGAAGAGCGCATCCTGAGCACAGTGGAGACGCAGTGCGCCTACGAGCTCATGGACCAGATAAAAATGGAGTCCGACTCGCGGCACGGCAAGCTCGCCGCGGCGCTCGAGAGCACCAAGTCCGAGGTCATCTTCCTCAAGGCGAGCCTCTTCGACAAGGACTCCGAGCTGCGGCGCGCCCTGGACGCGAACGAGAAGCTCCAATCCGAGACGAGAACGGACAACGAGCTGAAGGAGCAGCTGCAGGGCGCGCTCCTGGAGAACGGGCAGCTGAAGCGCGAGCTGCAGCAGCACACCTCCGAGAAGAAGGCCTCGGCGAAGGCGACGGACGCCGCCGACGCGGCGGCGGAGGCGGCGAAGAAGGGGGAGATGGAGGCCGAGCTGAGGCGTCTGCGGGTGCAGGCCGAGCAGTGGAGGAAGGCCGCCGAGACCGCCATGGCGCTGCTCACGGTGGGCAAGGGCGGCAACGGGAAGGTGGTGGACCGGAGCGAGTCGCTTGAAGGAGGCGGCGGCGGCGGCGGCAAGTACGCCGGCCTGTGGGACGAGCTCGACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAGGCGGATCAGCGGCATGTGGAAGAAATGAGGCTGATCAGAATCAAACTGCGCGCGCTATGCGCTAGGGAATTTGCTCATCTTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACAAAAGGAAAAAGGAGAAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATACGTGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGTTTTCGTCAGTTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTGTTCTTCAATCGGCGTGATTCAAACATTTCGGCCCATTTCTCAGTCCTGGGCCCTTTTCTGTCTT]

[+] EMBL AK071045             [TAGAGTCCCAGCTCTCGCAGCTGCAAGACGAGCTCAAGAAAGCCAAGGAGCAGCTGCTCTCCACCGAGCACTCCAAGCGGCGCGCCCTGCAGGAGGCCGAGGACGCCAGGGCGCAGGCGGCGGCGGCGTCCGCGCAGGTCAGGGACTCCGAGGCGCAGCTCGCCGAGCTCTCCTCCGCCGAGGAGAGCCGCCTCCTCGAGCTTCGCCGGCTGTCCCAGGAGCGCGACCGCTCGTGGCAGTCGGAGCTCGAGGCCATGCAGAAGCAGCACGCCGCCGACTCGGCCGCGCTCGTCGCGGCCATGGGCGAGGTGCACCGCCTCCGCGTGCAGCTGGCCGCGGCGGCGCGCGCCGACCGCAAGCAGGACGTGGTGGAGGCGATGGCCACCATCGACGAGCTCAGGGTGAAGCTCAAGGCGAGCGAGGAGGCCGAGGCGCAGGCGCGCGCCTTGCACGAGGAGTGCAAGCAGCAGCTGGAGACGAGCCGTGCCACCATCGACTCGCTGCTCACGGACGGCTCCAAGCTCATGGACTCCTTCAGCCTCGTGGTCAAGGAGCTCGAGGAGTCACGAGCCAAGGTGAAGGCACTCGAGGAGGAGATCGCGGAGACGTCGGCGGCAAAGGCCGGCGAGCGTTGCAACTGCTCGGCGTCGGCGTCGGCATCGGAGGTCGCTGAGCTGAGGTCGGAATTGGAGTCCACGGAGGCCAGGTTCCAAGAAGAGCGCATCCTGAGCACAGTGGAGACGCAGTGCGCCTACGAGCTCATGGACCAGATAAAAATGGAGTCCGACTCGCGGCACGGCAAGCTCGCCGCGGCGCTCGAGAGCACCAAGTCCGAGGTCATCTTCCTCAAGGCGAGCCTCTTCGACAAGGACTCCGAGCTGCGGCGCGCCCTGGACGCGAACGAGAAGCTCCAATCCGAGACGAGAACGGACAACGAGCTGAAGGAGCAGCTGCAGGGCGCGCTCCTGGAGAACGGGCAGCTGAAGCGCGAGCTGCAGCAGCACACCTCCGAGAAGAAGGCCTCGGCGAAGGCGACGGACGCCGCCGACGCGGCGGCGGAGGCGGCGAAGAAGGGGGAGATGGAGGCCGAGCTGAGGCGTCTGCGGGTGCAGGCCGAGCAGTGGAGGAAGGCCGCCGAGACCGCCATGGCGCTGCTCACGGTGGGCAAGGGCGGCAACGGGAAGGTGGTGGACCGGAGCGAGTCGCTTGAAGGAGGCGGCGGCGGCGGCGGCAAGTACGCCGGCCTGTGGGACGAGCTCGACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAGGCGGATCAGCGGCATGTGGAAGAAATGAGGCTGATCAGAATCAAACTGCGCGCGCTATGCGCTAGGGAATTTGCTCATCTTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACAAAAGGAAAAAGGAGAAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATACGTGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGTTTTCGTCAGTTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTGTTCTTCAATCGGCGTGATTCAAACATTTCGGCCCATTTCTCAGTCCTGGGCCCTTTTCTGTCTT]




>consensus_2945#0
TAGAGTCCCAGCTCTCGCAGCTGCAAGACGAGCTCAAGAAAGCCAAGGAGCAGCTGCTCT
CCACCGAGCACTCCAAGCGGCGCGCCCTGCAGGAGGCCGAGGACGCCAGGGCGCAGGCGG
CGGCGGCGTCCGCGCAGGTCAGGGACTCCGAGGCGCAGCTCGCCGAGCTCTCCTCCGCCG
AGGAGAGCCGCCTCCTCGAGCTTCGCCGGCTGTCCCAGGAGCGCGACCGCTCGTGGCAGT
CGGAGCTCGAGGCCATGCAGAAGCAGCACGCCGCCGACTCGGCCGCGCTCGTCGCGGCCA
TGGGCGAGGTGCACCGCCTCCGCGTGCAGCTGGCCGCGGCGGCGCGCGCCGACCGCAAGC
AGGACGTGGTGGAGGCGATGGCCACCATCGACGAGCTCAGGGTGAAGCTCAAGGCGAGCG
AGGAGGCCGAGGCGCAGGCGCGCGCCTTGCACGAGGAGTGCAAGCAGCAGCTGGAGACGA
GCCGTGCCACCATCGACTCGCTGCTCACGGACGGCTCCAAGCTCATGGACTCCTTCAGCC
TCGTGGTCAAGGAGCTCGAGGAGTCACGAGCCAAGGTGAAGGCACTCGAGGAGGAGATCG
CGGAGACGTCGGCGGCAAAGGCCGGCGAGCGTTGCAACTGCTCGGCGTCGGCGTCGGCAT
CGGAGGTCGCTGAGCTGAGGTCGGAATTGGAGTCCACGGAGGCCAGGTTCCAAGAAGAGC
GCATCCTGAGCACAGTGGAGACGCAGTGCGCCTACGAGCTCATGGACCAGATAAAAATGG
AGTCCGACTCGCGGCACGGCAAGCTCGCCGCGGCGCTCGAGAGCACCAAGTCCGAGGTCA
TCTTCCTCAAGGCGAGCCTCTTCGACAAGGACTCCGAGCTGCGGCGCGCCCTGGACGCGA
ACGAGAAGCTCCAATCCGAGACGAGAACGGACAACGAGCTGAAGGAGCAGCTGCAGGGCG
CGCTCCTGGAGAACGGGCAGCTGAAGCGCGAGCTGCAGCAGCACACCTCCGAGAAGAAGG
CCTCGGCGAAGGCGACGGACGCCGCCGACGCGGCGGCGGAGGCGGCGAAGAAGGGGGAGA
TGGAGGCCGAGCTGAGGCGTCTGCGGGTGCAGGCCGAGCAGTGGAGGAAGGCCGCCGAGA
CCGCCATGGCGCTGCTCACGGTGGGCAAGGGCGGCAACGGGAAGGTGGTGGACCGGAGCG
AGTCGCTTGAAGGAGGCGGCGGCGGCGGCGGCAAGTACGCCGGCCTGTGGGACGAGCTCG
ACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAGGCGGATCAGCGGCATGTGGA
AGAAATGAGGCTGATCAGAATCAAACTGCGCGCGCTATGCGCTAGGGAATTTGCTCATCT
TTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACAAAAGGAAAAAGGAGA
AAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATACG
TGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGTT
TTCGTCAGTTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTGT
TCTTCAATCGGCGTGATTCAAACATTTCGGCCCATTTCTCAGTCCTGGGCCCTTTTCTGT
CTT

consensusID : consensus_2945#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [CCCGAGACCGCCCATGGCGCTGCTCACCGGTGGCAAGGCGGCAACGGGAAGTTGGTGGACCGGAGCGAGTCGCTTGAAGGAGGCGCGGCAAGTACGCCGGCCTGTGGGACGAGCTCGACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAGCGGATCAGCGGCATGTGGAAGAAATGAGGCTGATCAGAATCAAACCCCGCGCGCTATGCGCTAGGGAATTTGCTCATCTTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACCAAAGGAAAAAGGAGAAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATACGTGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGTTTTCGTCAATTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTGTTCTTCAATCGGCGTGATTCAACCAAAAAAAAAA]

[+] EMBL BI805283             [CCCGAGACCGCCCATGGCGCTGCTCACCGGTGGCAAGGCGGCAACGGGAAGTTGGTGGACCGGAGCGAGTCGCTTGAAGGAGGCGCGGCAAGTACGCCGGCCTGTGGGACGAGCTCGACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAGCGGATCAGCGGCATGTGGAAGAAATGAGGCTGATCAGAATCAAACCCCGCGCGCTATGCGCTAGGGAATTTGCTCATCTTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACCAAAGGAAAAAGGAGAAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATACGTGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGTTTTCGTCAATTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTGTTCTTCAATCGGCGTGATTCAACCAAAAAAAAAA]




>consensus_2945#1
CCCGAGACCGCCCATGGCGCTGCTCACCGGTGGCAAGGCGGCAACGGGAAGTTGGTGGAC
CGGAGCGAGTCGCTTGAAGGAGGCGCGGCAAGTACGCCGGCCTGTGGGACGAGCTCGACG
ACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAGCGGATCAGCGGCATGTGGAAGAA
ATGAGGCTGATCAGAATCAAACCCCGCGCGCTATGCGCTAGGGAATTTGCTCATCTTTTC
CCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACCAAAGGAAAAAGGAGAAAAA
CATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATACGTGGT
ATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGTTTTCG
TCAATTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTGTTCTT
CAATCGGCGTGATTCAACCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2945#0      TAGAGTCCCAGCTCTCGCAGCTGCAAGACGAGCTCAAGAAAGCCAAGGAGCAGCTGCTCT 60
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      CCACCGAGCACTCCAAGCGGCGCGCCCTGCAGGAGGCCGAGGACGCCAGGGCGCAGGCGG 120
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      CGGCGGCGTCCGCGCAGGTCAGGGACTCCGAGGCGCAGCTCGCCGAGCTCTCCTCCGCCG 180
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      AGGAGAGCCGCCTCCTCGAGCTTCGCCGGCTGTCCCAGGAGCGCGACCGCTCGTGGCAGT 240
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      CGGAGCTCGAGGCCATGCAGAAGCAGCACGCCGCCGACTCGGCCGCGCTCGTCGCGGCCA 300
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      TGGGCGAGGTGCACCGCCTCCGCGTGCAGCTGGCCGCGGCGGCGCGCGCCGACCGCAAGC 360
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      AGGACGTGGTGGAGGCGATGGCCACCATCGACGAGCTCAGGGTGAAGCTCAAGGCGAGCG 420
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      AGGAGGCCGAGGCGCAGGCGCGCGCCTTGCACGAGGAGTGCAAGCAGCAGCTGGAGACGA 480
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      GCCGTGCCACCATCGACTCGCTGCTCACGGACGGCTCCAAGCTCATGGACTCCTTCAGCC 540
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      TCGTGGTCAAGGAGCTCGAGGAGTCACGAGCCAAGGTGAAGGCACTCGAGGAGGAGATCG 600
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      CGGAGACGTCGGCGGCAAAGGCCGGCGAGCGTTGCAACTGCTCGGCGTCGGCGTCGGCAT 660
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      CGGAGGTCGCTGAGCTGAGGTCGGAATTGGAGTCCACGGAGGCCAGGTTCCAAGAAGAGC 720
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      GCATCCTGAGCACAGTGGAGACGCAGTGCGCCTACGAGCTCATGGACCAGATAAAAATGG 780
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      AGTCCGACTCGCGGCACGGCAAGCTCGCCGCGGCGCTCGAGAGCACCAAGTCCGAGGTCA 840
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      TCTTCCTCAAGGCGAGCCTCTTCGACAAGGACTCCGAGCTGCGGCGCGCCCTGGACGCGA 900
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      ACGAGAAGCTCCAATCCGAGACGAGAACGGACAACGAGCTGAAGGAGCAGCTGCAGGGCG 960
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      CGCTCCTGGAGAACGGGCAGCTGAAGCGCGAGCTGCAGCAGCACACCTCCGAGAAGAAGG 1020
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      CCTCGGCGAAGGCGACGGACGCCGCCGACGCGGCGGCGGAGGCGGCGAAGAAGGGGGAGA 1080
consensus_2945#1      ------------------------------------------------------------
                                                                                  

consensus_2945#0      TGGAGGCCGAGCTGAGGCGTCTGCGGGTGCAGGCCGAGCAGTGGAGGAAGGCCGCCGAGA 1140
consensus_2945#1      -----------------------------------------------------CCCGAGA 7
                                                                            ******

consensus_2945#0      CCGCC-ATGGCGCTGCTCACGGTGGGCAAGGGCGGCAACGGGAAGGTGGTGGACCGGAGC 1199
consensus_2945#1      CCGCCCATGGCGCTGCTCACCGGTGGCAAGG-CGGCAACGGGAAGTTGGTGGACCGGAGC 66
                      ***** ************** *  ******* ************* **************

consensus_2945#0      GAGTCGCTTGAAGGAGGCGGCGGCGGCGGCGGCAAGTACGCCGGCCTGTGGGACGAGCTC 1259
consensus_2945#1      GAGTCGCTTGAAGGAGGCG----------CGGCAAGTACGCCGGCCTGTGGGACGAGCTC 116
                      *******************          *******************************

consensus_2945#0      GACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAGGCGGATCAGCGGCATGTGG 1319
consensus_2945#1      GACGACGACGCGGCGGCCAGGAAGAACGGCAACGTGCTCAG-CGGATCAGCGGCATGTGG 175
                      ***************************************** ******************

consensus_2945#0      AAGAAATGAGGCTGATCAGAATCAAACTGCGCGCGCTATGCGCTAGGGAATTTGCTCATC 1379
consensus_2945#1      AAGAAATGAGGCTGATCAGAATCAAACCCCGCGCGCTATGCGCTAGGGAATTTGCTCATC 235
                      ***************************  *******************************

consensus_2945#0      TTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACAAAAGGAAAAAGGAG 1439
consensus_2945#1      TTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACCAAAGGAAAAAGGAG 295
                      ********************************************* **************

consensus_2945#0      AAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATAC 1499
consensus_2945#1      AAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATAC 355
                      ************************************************************

consensus_2945#0      GTGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGT 1559
consensus_2945#1      GTGGTATATGAAGGGTTAATTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGT 415
                      ************************************************************

consensus_2945#0      TTTCGTCAGTTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTG 1619
consensus_2945#1      TTTCGTCAATTCTGATTCTCTCAGATTCACCGATGAGAGCTGTTTGTATGTAACCTTTTG 475
                      ******** ***************************************************

consensus_2945#0      TTCTTCAATCGGCGTGATTCAAACATTTCGGCCCATTTCTCAGTCCTGGGCCCTTTTCTG 1679
consensus_2945#1      TTCTTCAATCGGCGTGATTCAACCAAAAAAAAAA-------------------------- 509
                      ********************** **                                   

consensus_2945#0      TCTT 1683
consensus_2945#1      ----