cluster # 2947

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Oryza sativa
cluster # 2947 cluster # 2947 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2947#0 length = 273 sequences # 1

consensus_2947#1 length = 258 sequences # 1

consensusID : consensus_2947#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [CGTGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCGTCGCTCCCCTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGCCCTCTCCGTGGGGCGGCGCTGGGCGGTTGATACGGTTACGCCTGCGGGGGCACTGCCCTCGCCCGCCTCGGCGCGCGCGCGAGGGTGGTCTCCCCGCGCTGCTCCTCCTACGGCGCCGCGCCGANGCCGGGGAGTCGCCGCGGAGGGCTCCGAAGGTCTTGAAGTNCCCGGGGNCAAAA]

[+] EMBL AU164305             [CGTGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCGTCGCTCCCCTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGCCCTCTCCGTGGGGCGGCGCTGGGCGGTTGATACGGTTACGCCTGCGGGGGCACTGCCCTCGCCCGCCTCGGCGCGCGCGCGAGGGTGGTCTCCCCGCGCTGCTCCTCCTACGGCGCCGCGCCGANGCCGGGGAGTCGCCGCGGAGGGCTCCGAAGGTCTTGAAGTNCCCGGGGNCAAAA]




>consensus_2947#0
CGTGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCGTCGCTCCC
CTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGCCCTCTCCGTGGGGCGGCGCTGGGCGG
TTGATACGGTTACGCCTGCGGGGGCACTGCCCTCGCCCGCCTCGGCGCGCGCGCGAGGGT
GGTCTCCCCGCGCTGCTCCTCCTACGGCGCCGCGCCGANGCCGGGGAGTCGCCGCGGAGG
GCTCCGAAGGTCTTGAAGTNCCCGGGGNCAAAA

consensusID : consensus_2947#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [TGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCTTCGCTCCCCTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGGNCTCTCCGTGGGGCGGCGCTGGGCGGTTAANACGGTTACGCCTGCGGGGGCACTGCCCCTNGCCCGCNTCGGCGCGCGCCGCGAGGGTGGTCTCNNCGCGCTGCTNNTTCTACGGCGCCGTNNCNACGCCGGGAAGTCGCCCGCGGAGGCGCTCCGAAGGTCCTGG]

[+] EMBL AU162174             [TGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCTTCGCTCCCCTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGGNCTCTCCGTGGGGCGGCGCTGGGCGGTTAANACGGTTACGCCTGCGGGGGCACTGCCCCTNGCCCGCNTCGGCGCGCGCCGCGAGGGTGGTCTCNNCGCGCTGCTNNTTCTACGGCGCCGTNNCNACGCCGGGAAGTCGCCCGCGGAGGCGCTCCGAAGGTCCTGG]




>consensus_2947#1
TGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCTTCGCTCCCCT
CCACCGCGTGCACGTCCTCCTCGCGCCGCCGGNCTCTCCGTGGGGCGGCGCTGGGCGGTT
AANACGGTTACGCCTGCGGGGGCACTGCCCCTNGCCCGCNTCGGCGCGCGCCGCGAGGGT
GGTCTCNNCGCGCTGCTNNTTCTACGGCGCCGTNNCNACGCCGGGAAGTCGCCCGCGGAG
GCGCTCCGAAGGTCCTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2947#0      CGTGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCGTCGCTCCC 60
consensus_2947#1      --TGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCTTCGCTCCC 58
                        ************************************************* ********

consensus_2947#0      CTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGCCCTCTCCGTGGGGCGGCGCTGGGCGG 120
consensus_2947#1      CTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGGNCTCTCCGTGGGGCGGCGCTGGGCGG 118
                      *********************************  *************************

consensus_2947#0      TTGATACGGTTACGCCTGCGGGGGCACTGCCC-TCGCCCGCCTCGGCGCGCGC-GCGAGG 178
consensus_2947#1      TTAANACGGTTACGCCTGCGGGGGCACTGCCCCTNGCCCGCNTCGGCGCGCGCCGCGAGG 178
                      ** * *************************** * ****** *********** ******

consensus_2947#0      GTGGTCTCCCCGCGCTGCTCCTCCTACGGCGCCGCGCCGANGCCGGGGAGTCGCC-GCGG 237
consensus_2947#1      GTGGTCTCNNCGCGCTGCTNNTTCTACGGCGCCGTNNCNACGCCGGGAAGTCGCCCGCGG 238
                      ********  *********  * ***********   * * ****** ******* ****

consensus_2947#0      AGG-GCTCCGAAGGTCTTGAAGTNCCCGGGGNCAAAA 273
consensus_2947#1      AGGCGCTCCGAAGGTCCTGG----------------- 258
                      *** ************ **