These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence [GTTGTNNNAGGTTACTTTGACCTGTCAGTAAAAGACACGTTGAAAACCTGGGGTCTGCTGGAGCTGGTCAACTCCGTGGTTGGGCTGATTATTGTGCTGATTATTNGNATGGTNGCGTAAAANGACACCAGAGCCTGCCAATGGCAGNNNNNNNCTGATGACNAAGTCTAAAAATGTGCCCGGNNNNNNNNNTNNNCNNTCCGGGGNNNNNNNNNNNNNGAGGGGAACANNNNNNNNNANNGCCGCT] [+] EMBL CF195856 [GTTGTNNNAGGTTACTTTGACCTGTCAGTAAAAGACACGTTGAAAACCTGGGGTCTGCTGGAGCTGGTCAACTCCGTGGTTGGGCTGATTATTGTGCTGATTATTNGNATGGTNGCGTAAAANGACACCAGAGCCTGCCAATGGCAGNNNNNNNCTGATGACNAAGTCTAAAAATGTGCCCGGNNNNNNNNNTNNNCNNTCCGGGGNNNNNNNNNNNNNGAGGGGAACANNNNNNNNNANNGCCGCT] consensusID : consensus_2948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 184 fasta sequence [TAACGATGCATCTTTCTGGTTGTTCAAAGGTTACTTTGACCTGTCAGTAAAAGACACGTTGAAACCTGGGGTCTGCTGGAGCTGGTCANNNNCGTGGTTGGGCTGATTATTGTGCTGATTATTNNNATGGTANCGTAAAAGGACANCAGAGCNTGCCAATGGCAGGCTCNNNCTGATGACANNN] [+] EMBL CF195878 [TAACGATGCATCTTTCTGGTTGTTCAAAGGTTACTTTGACCTGTCAGTAAAAGACACGTTGAAACCTGGGGTCTGCTGGAGCTGGTCANNNNCGTGGTTGGGCTGATTATTGTGCTGATTATTNNNATGGTANCGTAAAAGGACANCAGAGCNTGCCAATGGCAGGCTCNNNCTGATGACANNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2948#0 ------------------GTTGTNNNA-GGTTACTTTGACCTGTCAGTAAAAGACACGTT 41 consensus_2948#1 TAACGATGCATCTTTCTGGTTGTTCAAAGGTTACTTTGACCTGTCAGTAAAAGACACGTT 60 ***** * ******************************** consensus_2948#0 GAAAACCTGGGGTCTGCTGGAGCTGGTCAACTCCGTGGTTGGGCTGATTATTGTGCTGAT 101 consensus_2948#1 GAAA-CCTGGGGTCTGCTGGAGCTGGTCANNNNCGTGGTTGGGCTGATTATTGTGCTGAT 119 **** ************************ *************************** consensus_2948#0 TATTNGNATGGTNGCGTAAAANGACACCAGAGCCTGCCAATGGCAGNNNNNNNCTGATGA 161 consensus_2948#1 TATTNNNATGGTANCGTAAAAGGACANCAGAGCNTGCCAATGGCAGGCTCNNNCTGATGA 179 ***** ****** ******* **** ****** ************ ********** consensus_2948#0 CNAAGTCTAAAAATGTGCCCGGNNNNNNNNNTNNNCNNTCCGGGGNNNNNNNNNNNNNGA 221 consensus_2948#1 CANNN------------------------------------------------------- 184 * consensus_2948#0 GGGGAACANNNNNNNNNANNGCCGCT 247 consensus_2948#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||