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Oryza sativa
cluster # 2956 cluster # 2956       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2956#0 length = 844 sequences # 1  
consensus_2956#1 length = 166 sequences # 1  

consensusID : consensus_2956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 844
fasta sequence
                              [TCCTCCTCCTCCTCCTCTTCCTCCTTGCCGCCGCGACGGCGACGGCGACGGCGACGGGCAACGCGCTGCCGCCGGAGCCGAAGCCGGCGCGGTGGCCGGACGTCTTCCACGCGAGGCTGTTCACGAACCTGACCAACCACTCCGCCGCGTCGACGGGGCCACCGCTGCGTGTCGCCGACCTCTACTACGACTGGTCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCCGCCGACGACCCGCTCTACGACGTCGAGTGGGACAACGGCACCACCTTCTACTTCGACTCCCGCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCTCCGCCCGGGCTGGCTCGCCGACGGCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGTGGGACAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGAACTTCCTCGACAAGACAGGGATACAGCAATTCGTGATGAGCTTCGAGGTCGGCGTGACCCTGGAGGACGATTCCCAGTGGCAGGCGCCCGCACACTGCTTCCCTGCCGCCGCCGCAGACGAAGATGAAGAGGAAGAGGAAGATGAAGAACAGGATGAGATGATCAAGAGCAGCTATGATCACATTGAGGGTGTGGATGACGGGCTCGACGCCGCCAGGTTACTCAGGATGCTCGCAGGAGCTGCGGCGTTTTAGTTACCAAGTGGCTCGAATTTTTGTGCAAACATATACTGGTACAGGCTTACAGCACAGTACTGTATAAGAGAGTGTGGTTAATTCAGGAATTTTTCAAGAAGGGTTAATTG]

[+] EMBL AK068238             [TCCTCCTCCTCCTCCTCTTCCTCCTTGCCGCCGCGACGGCGACGGCGACGGCGACGGGCAACGCGCTGCCGCCGGAGCCGAAGCCGGCGCGGTGGCCGGACGTCTTCCACGCGAGGCTGTTCACGAACCTGACCAACCACTCCGCCGCGTCGACGGGGCCACCGCTGCGTGTCGCCGACCTCTACTACGACTGGTCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCCGCCGACGACCCGCTCTACGACGTCGAGTGGGACAACGGCACCACCTTCTACTTCGACTCCCGCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCTCCGCCCGGGCTGGCTCGCCGACGGCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGTGGGACAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGAACTTCCTCGACAAGACAGGGATACAGCAATTCGTGATGAGCTTCGAGGTCGGCGTGACCCTGGAGGACGATTCCCAGTGGCAGGCGCCCGCACACTGCTTCCCTGCCGCCGCCGCAGACGAAGATGAAGAGGAAGAGGAAGATGAAGAACAGGATGAGATGATCAAGAGCAGCTATGATCACATTGAGGGTGTGGATGACGGGCTCGACGCCGCCAGGTTACTCAGGATGCTCGCAGGAGCTGCGGCGTTTTAGTTACCAAGTGGCTCGAATTTTTGTGCAAACATATACTGGTACAGGCTTACAGCACAGTACTGTATAAGAGAGTGTGGTTAATTCAGGAATTTTTCAAGAAGGGTTAATTG]


>consensus_2956#0 TCCTCCTCCTCCTCCTCTTCCTCCTTGCCGCCGCGACGGCGACGGCGACGGCGACGGGCA ACGCGCTGCCGCCGGAGCCGAAGCCGGCGCGGTGGCCGGACGTCTTCCACGCGAGGCTGT TCACGAACCTGACCAACCACTCCGCCGCGTCGACGGGGCCACCGCTGCGTGTCGCCGACC TCTACTACGACTGGTCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCCG CCGACGACCCGCTCTACGACGTCGAGTGGGACAACGGCACCACCTTCTACTTCGACTCCC GCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCTCCGCCCGGGCTGGCTCGCCGACG GCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGTGGG ACAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGA ACTTCCTCGACAAGACAGGGATACAGCAATTCGTGATGAGCTTCGAGGTCGGCGTGACCC TGGAGGACGATTCCCAGTGGCAGGCGCCCGCACACTGCTTCCCTGCCGCCGCCGCAGACG AAGATGAAGAGGAAGAGGAAGATGAAGAACAGGATGAGATGATCAAGAGCAGCTATGATC ACATTGAGGGTGTGGATGACGGGCTCGACGCCGCCAGGTTACTCAGGATGCTCGCAGGAG CTGCGGCGTTTTAGTTACCAAGTGGCTCGAATTTTTGTGCAAACATATACTGGTACAGGC TTACAGCACAGTACTGTATAAGAGAGTGTGGTTAATTCAGGAATTTTTCAAGAAGGGTTA ATTG



consensusID : consensus_2956#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 166
fasta sequence
                              [CAACCACTCCGCCGCGTCGACGGGGCCGCCGCTGCGTGTCGCCGACCTCTACTACGACTGGCCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCNNNCGACGACCCGCTCTACGACGNNNAGNGGGACAACGGCACCANCNTCTNNNNNNNCNNN]

[+] EMBL CF196093             [CAACCACTCCGCCGCGTCGACGGGGCCGCCGCTGCGTGTCGCCGACCTCTACTACGACTGGCCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCNNNCGACGACCCGCTCTACGACGNNNAGNGGGACAACGGCACCANCNTCTNNNNNNNCNNN]


>consensus_2956#1 CAACCACTCCGCCGCGTCGACGGGGCCGCCGCTGCGTGTCGCCGACCTCTACTACGACTG GCCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCNNNCGACGACCCGCT CTACGACGNNNAGNGGGACAACGGCACCANCNTCTNNNNNNNCNNN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2956#0      TCCTCCTCCTCCTCCTCTTCCTCCTTGCCGCCGCGACGGCGACGGCGACGGCGACGGGCA 60
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      ACGCGCTGCCGCCGGAGCCGAAGCCGGCGCGGTGGCCGGACGTCTTCCACGCGAGGCTGT 120
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      TCACGAACCTGACCAACCACTCCGCCGCGTCGACGGGGCCACCGCTGCGTGTCGCCGACC 180
consensus_2956#1      -------------CAACCACTCCGCCGCGTCGACGGGGCCGCCGCTGCGTGTCGCCGACC 47
                                   *************************** *******************

consensus_2956#0      TCTACTACGACTGGTCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCCG 240
consensus_2956#1      TCTACTACGACTGGCCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCNN 107
                      ************** *******************************************  

consensus_2956#0      CCGACGACCCGCTCTACGACGTCGAGTGGGACAACGGCACCACCTTCTACTTCGACTCCC 300
consensus_2956#1      NCGACGACCCGCTCTACGACGNNNAGNGGGACAACGGCACCANCNTCTNNNNNNNCNNN- 166
                       ********************   ** *************** * ***       *    

consensus_2956#0      GCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCTCCGCCCGGGCTGGCTCGCCGACG 360
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      GCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGTGGG 420
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      ACAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGA 480
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      ACTTCCTCGACAAGACAGGGATACAGCAATTCGTGATGAGCTTCGAGGTCGGCGTGACCC 540
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      TGGAGGACGATTCCCAGTGGCAGGCGCCCGCACACTGCTTCCCTGCCGCCGCCGCAGACG 600
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      AAGATGAAGAGGAAGAGGAAGATGAAGAACAGGATGAGATGATCAAGAGCAGCTATGATC 660
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      ACATTGAGGGTGTGGATGACGGGCTCGACGCCGCCAGGTTACTCAGGATGCTCGCAGGAG 720
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      CTGCGGCGTTTTAGTTACCAAGTGGCTCGAATTTTTGTGCAAACATATACTGGTACAGGC 780
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      TTACAGCACAGTACTGTATAAGAGAGTGTGGTTAATTCAGGAATTTTTCAAGAAGGGTTA 840
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      ATTG 844
consensus_2956#1      ----
                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)