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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2975 cluster # 2975       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2975#0 length = 602 sequences # 1  
consensus_2975#1 length = 244 sequences # 1  

consensusID : consensus_2975#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence
                              [CGCCTTTGAAAATAACATCGCCAGAAATCAGCAGCTTTGCCCGATCATCAAAAAACACGACATGACCCGGCGTATGCCCAGGGCAATGTAACACCTGTAAAGTCACATTCCCTATGCTGATGGTATCGCCTTCGTTCAGCCAACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACGACTTTGCGCAGGCAAGCCTTGCAGCCAGAACTCATCTTCTTTTTCCGGGCCGAAAACCGGCACGCCGTAATGTTGCGCCAGTTCCGCCGCTGCGCCAACGTGGTCCAGATGACCATGCGTCAGCAGGATCTGCATCAGTGTCAGGCCGCTGTCATCAACTTCCTGTTTGATTTTTTCCGCATCGCCGCCAGGATCGACCAGTGCGGCCAGACGGGTTTGTTCACACCAGATTAATGAACAGTTCTGGGAGAATGCGGTGACCGGAATAATACGATAGTTCATACTGCCCCTGTTTCGTTAAGCAATTACTACCAGTGCCGTGCTGGCCCGGTATCAATATGCACAAAGTTACTACGTGGATAATATCCTACACCACCTGCGCGCATAGATAACGCGGCTTTGCGAATATTGCTTA]

[+] EMBL CF306292             [CGCCTTTGAAAATAACATCGCCAGAAATCAGCAGCTTTGCCCGATCATCAAAAAACACGACATGACCCGGCGTATGCCCAGGGCAATGTAACACCTGTAAAGTCACATTCCCTATGCTGATGGTATCGCCTTCGTTCAGCCAACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACGACTTTGCGCAGGCAAGCCTTGCAGCCAGAACTCATCTTCTTTTTCCGGGCCGAAAACCGGCACGCCGTAATGTTGCGCCAGTTCCGCCGCTGCGCCAACGTGGTCCAGATGACCATGCGTCAGCAGGATCTGCATCAGTGTCAGGCCGCTGTCATCAACTTCCTGTTTGATTTTTTCCGCATCGCCGCCAGGATCGACCAGTGCGGCCAGACGGGTTTGTTCACACCAGATTAATGAACAGTTCTGGGAGAATGCGGTGACCGGAATAATACGATAGTTCATACTGCCCCTGTTTCGTTAAGCAATTACTACCAGTGCCGTGCTGGCCCGGTATCAATATGCACAAAGTTACTACGTGGATAATATCCTACACCACCTGCGCGCATAGATAACGCGGCTTTGCGAATATTGCTTA]


>consensus_2975#0 CGCCTTTGAAAATAACATCGCCAGAAATCAGCAGCTTTGCCCGATCATCAAAAAACACGA CATGACCCGGCGTATGCCCAGGGCAATGTAACACCTGTAAAGTCACATTCCCTATGCTGA TGGTATCGCCTTCGTTCAGCCAACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAA ACATACGACTTTGCGCAGGCAAGCCTTGCAGCCAGAACTCATCTTCTTTTTCCGGGCCGA AAACCGGCACGCCGTAATGTTGCGCCAGTTCCGCCGCTGCGCCAACGTGGTCCAGATGAC CATGCGTCAGCAGGATCTGCATCAGTGTCAGGCCGCTGTCATCAACTTCCTGTTTGATTT TTTCCGCATCGCCGCCAGGATCGACCAGTGCGGCCAGACGGGTTTGTTCACACCAGATTA ATGAACAGTTCTGGGAGAATGCGGTGACCGGAATAATACGATAGTTCATACTGCCCCTGT TTCGTTAAGCAATTACTACCAGTGCCGTGCTGGCCCGGTATCAATATGCACAAAGTTACT ACGTGGATAATATCCTACACCACCTGCGCGCATAGATAACGCGGCTTTGCGAATATTGCT TA



consensusID : consensus_2975#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence
                              [NNNGTATGCCNNNNNGCAATGTAACACNNNNAAAGTCANATTCCCTNNGCTGATGGTATCGCCTNCGTTCAGCCNACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACGACTTTGCGCNNNCNAGCCTTGCAGCCNNNACTCATCTTCTTTTTNNNNNCCGAAAACCGGCACGCCNNNATGTTGCGCCAGTTCCGCCGCTGCGCCANCGTGGTCCNNATGACNNTGCGTCAGN]

[+] EMBL CF196229             [NNNGTATGCCNNNNNGCAATGTAACACNNNNAAAGTCANATTCCCTNNGCTGATGGTATCGCCTNCGTTCAGCCNACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACGACTTTGCGCNNNCNAGCCTTGCAGCCNNNACTCATCTTCTTTTTNNNNNCCGAAAACCGGCACGCCNNNATGTTGCGCCAGTTCCGCCGCTGCGCCANCGTGGTCCNNATGACNNTGCGTCAGN]


>consensus_2975#1 NNNGTATGCCNNNNNGCAATGTAACACNNNNAAAGTCANATTCCCTNNGCTGATGGTATC GCCTNCGTTCAGCCNACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACG ACTTTGCGCNNNCNAGCCTTGCAGCCNNNACTCATCTTCTTTTTNNNNNCCGAAAACCGG CACGCCNNNATGTTGCGCCAGTTCCGCCGCTGCGCCANCGTGGTCCNNATGACNNTGCGT CAGN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2975#0      CGCCTTTGAAAATAACATCGCCAGAAATCAGCAGCTTTGCCCGATCATCAAAAAACACGA 60
consensus_2975#1      ------------------------------------------------------------
                                                                                  

consensus_2975#0      CATGACCCGGCGTATGCCCAGGG-CAATGTAACACCTGTAAAGTCACATTCCCTATGCTG 119
consensus_2975#1      --------NNNGTATGCCNNNNNGCAATGTAACACNNNNAAAGTCANATTCCCTNNGCTG 52
                                 *******      ***********    ******* *******  ****

consensus_2975#0      ATGGTATCGCCTTCGTTCAGCCAACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCA 179
consensus_2975#1      ATGGTATCGCCTNCGTTCAGCCNACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCA 112
                      ************ ********* *************************************

consensus_2975#0      AACATACGACTTTGCGCAGGCAAGCCTTGCAGCCAGAACTCATCTTCTTTTTCCGGGCCG 239
consensus_2975#1      AACATACGACTTTGCGCNNNCNAGCCTTGCAGCCNNNACTCATCTTCTTTTTNNNNNCCG 172
                      *****************   * ************   ***************     ***

consensus_2975#0      AAAACCGGCACGCCGTAATGTTGCGCCAGTTCCGCCGCTGCGCCAACGTGGTCCAGATGA 299
consensus_2975#1      AAAACCGGCACGCCNNNATGTTGCGCCAGTTCCGCCGCTGCGCCANCGTGGTCCNNATGA 232
                      **************   **************************** ********  ****

consensus_2975#0      CCATGCGTCAGCAGGATCTGCATCAGTGTCAGGCCGCTGTCATCAACTTCCTGTTTGATT 359
consensus_2975#1      CNNTGCGTCAGN------------------------------------------------ 244
                      *  ********                                                 

consensus_2975#0      TTTTCCGCATCGCCGCCAGGATCGACCAGTGCGGCCAGACGGGTTTGTTCACACCAGATT 419
consensus_2975#1      ------------------------------------------------------------
                                                                                  

consensus_2975#0      AATGAACAGTTCTGGGAGAATGCGGTGACCGGAATAATACGATAGTTCATACTGCCCCTG 479
consensus_2975#1      ------------------------------------------------------------
                                                                                  

consensus_2975#0      TTTCGTTAAGCAATTACTACCAGTGCCGTGCTGGCCCGGTATCAATATGCACAAAGTTAC 539
consensus_2975#1      ------------------------------------------------------------
                                                                                  

consensus_2975#0      TACGTGGATAATATCCTACACCACCTGCGCGCATAGATAACGCGGCTTTGCGAATATTGC 599
consensus_2975#1      ------------------------------------------------------------
                                                                                  

consensus_2975#0      TTA 602
consensus_2975#1      ---
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)