These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [CGCCTTTGAAAATAACATCGCCAGAAATCAGCAGCTTTGCCCGATCATCAAAAAACACGACATGACCCGGCGTATGCCCAGGGCAATGTAACACCTGTAAAGTCACATTCCCTATGCTGATGGTATCGCCTTCGTTCAGCCAACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACGACTTTGCGCAGGCAAGCCTTGCAGCCAGAACTCATCTTCTTTTTCCGGGCCGAAAACCGGCACGCCGTAATGTTGCGCCAGTTCCGCCGCTGCGCCAACGTGGTCCAGATGACCATGCGTCAGCAGGATCTGCATCAGTGTCAGGCCGCTGTCATCAACTTCCTGTTTGATTTTTTCCGCATCGCCGCCAGGATCGACCAGTGCGGCCAGACGGGTTTGTTCACACCAGATTAATGAACAGTTCTGGGAGAATGCGGTGACCGGAATAATACGATAGTTCATACTGCCCCTGTTTCGTTAAGCAATTACTACCAGTGCCGTGCTGGCCCGGTATCAATATGCACAAAGTTACTACGTGGATAATATCCTACACCACCTGCGCGCATAGATAACGCGGCTTTGCGAATATTGCTTA] [+] EMBL CF306292 [CGCCTTTGAAAATAACATCGCCAGAAATCAGCAGCTTTGCCCGATCATCAAAAAACACGACATGACCCGGCGTATGCCCAGGGCAATGTAACACCTGTAAAGTCACATTCCCTATGCTGATGGTATCGCCTTCGTTCAGCCAACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACGACTTTGCGCAGGCAAGCCTTGCAGCCAGAACTCATCTTCTTTTTCCGGGCCGAAAACCGGCACGCCGTAATGTTGCGCCAGTTCCGCCGCTGCGCCAACGTGGTCCAGATGACCATGCGTCAGCAGGATCTGCATCAGTGTCAGGCCGCTGTCATCAACTTCCTGTTTGATTTTTTCCGCATCGCCGCCAGGATCGACCAGTGCGGCCAGACGGGTTTGTTCACACCAGATTAATGAACAGTTCTGGGAGAATGCGGTGACCGGAATAATACGATAGTTCATACTGCCCCTGTTTCGTTAAGCAATTACTACCAGTGCCGTGCTGGCCCGGTATCAATATGCACAAAGTTACTACGTGGATAATATCCTACACCACCTGCGCGCATAGATAACGCGGCTTTGCGAATATTGCTTA] consensusID : consensus_2975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence [NNNGTATGCCNNNNNGCAATGTAACACNNNNAAAGTCANATTCCCTNNGCTGATGGTATCGCCTNCGTTCAGCCNACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACGACTTTGCGCNNNCNAGCCTTGCAGCCNNNACTCATCTTCTTTTTNNNNNCCGAAAACCGGCACGCCNNNATGTTGCGCCAGTTCCGCCGCTGCGCCANCGTGGTCCNNATGACNNTGCGTCAGN] [+] EMBL CF196229 [NNNGTATGCCNNNNNGCAATGTAACACNNNNAAAGTCANATTCCCTNNGCTGATGGTATCGCCTNCGTTCAGCCNACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACGACTTTGCGCNNNCNAGCCTTGCAGCCNNNACTCATCTTCTTTTTNNNNNCCGAAAACCGGCACGCCNNNATGTTGCGCCAGTTCCGCCGCTGCGCCANCGTGGTCCNNATGACNNTGCGTCAGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2975#0 CGCCTTTGAAAATAACATCGCCAGAAATCAGCAGCTTTGCCCGATCATCAAAAAACACGA 60 consensus_2975#1 ------------------------------------------------------------ consensus_2975#0 CATGACCCGGCGTATGCCCAGGG-CAATGTAACACCTGTAAAGTCACATTCCCTATGCTG 119 consensus_2975#1 --------NNNGTATGCCNNNNNGCAATGTAACACNNNNAAAGTCANATTCCCTNNGCTG 52 ******* *********** ******* ******* **** consensus_2975#0 ATGGTATCGCCTTCGTTCAGCCAACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCA 179 consensus_2975#1 ATGGTATCGCCTNCGTTCAGCCNACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCA 112 ************ ********* ************************************* consensus_2975#0 AACATACGACTTTGCGCAGGCAAGCCTTGCAGCCAGAACTCATCTTCTTTTTCCGGGCCG 239 consensus_2975#1 AACATACGACTTTGCGCNNNCNAGCCTTGCAGCCNNNACTCATCTTCTTTTTNNNNNCCG 172 ***************** * ************ *************** *** consensus_2975#0 AAAACCGGCACGCCGTAATGTTGCGCCAGTTCCGCCGCTGCGCCAACGTGGTCCAGATGA 299 consensus_2975#1 AAAACCGGCACGCCNNNATGTTGCGCCAGTTCCGCCGCTGCGCCANCGTGGTCCNNATGA 232 ************** **************************** ******** **** consensus_2975#0 CCATGCGTCAGCAGGATCTGCATCAGTGTCAGGCCGCTGTCATCAACTTCCTGTTTGATT 359 consensus_2975#1 CNNTGCGTCAGN------------------------------------------------ 244 * ******** consensus_2975#0 TTTTCCGCATCGCCGCCAGGATCGACCAGTGCGGCCAGACGGGTTTGTTCACACCAGATT 419 consensus_2975#1 ------------------------------------------------------------ consensus_2975#0 AATGAACAGTTCTGGGAGAATGCGGTGACCGGAATAATACGATAGTTCATACTGCCCCTG 479 consensus_2975#1 ------------------------------------------------------------ consensus_2975#0 TTTCGTTAAGCAATTACTACCAGTGCCGTGCTGGCCCGGTATCAATATGCACAAAGTTAC 539 consensus_2975#1 ------------------------------------------------------------ consensus_2975#0 TACGTGGATAATATCCTACACCACCTGCGCGCATAGATAACGCGGCTTTGCGAATATTGC 599 consensus_2975#1 ------------------------------------------------------------ consensus_2975#0 TTA 602 consensus_2975#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||