cluster # 2981

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Oryza sativa
cluster # 2981 cluster # 2981 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2981#0 length = 206 sequences # 1

consensus_2981#1 length = 115 sequences # 1

consensusID : consensus_2981#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [CCGGGAGAGGGTGAGCCATGGCGTGCAGCTTCCCGCCTTCTTCCGCCACGAGGCTCCAGGCCGTGGACGCGGCGGCCGTNAGGAGCAGCAGGNTGCCGCCTAGGGCGCGTACCGTNTCCCCGGTGCAGAAATCGCTGGGCGCCGGCTGCAAGNCCGCGGNTGCCNNCCGGCAGNAAAGGTGCGACGANGACCTNGCNATCTAATTT]

[+] EMBL OSS14119A            [CCGGGAGAGGGTGAGCCATGGCGTGCAGCTTCCCGCCTTCTTCCGCCACGAGGCTCCAGGCCGTGGACGCGGCGGCCGTNAGGAGCAGCAGGNTGCCGCCTAGGGCGCGTACCGTNTCCCCGGTGCAGAAATCGCTGGGCGCCGGCTGCAAGNCCGCGGNTGCCNNCCGGCAGNAAAGGTGCGACGANGACCTNGCNATCTAATTT]




>consensus_2981#0
CCGGGAGAGGGTGAGCCATGGCGTGCAGCTTCCCGCCTTCTTCCGCCACGAGGCTCCAGG
CCGTGGACGCGGCGGCCGTNAGGAGCAGCAGGNTGCCGCCTAGGGCGCGTACCGTNTCCC
CGGTGCAGAAATCGCTGGGCGCCGGCTGCAAGNCCGCGGNTGCCNNCCGGCAGNAAAGGT
GCGACGANGACCTNGCNATCTAATTT

consensusID : consensus_2981#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 115
fasta sequence

                              [CCGCCTTCGTCCGCCACGAGGCTCCAGGCCGTGGACGCGGCGGCCGTGAGGAGCAGCAGGGTGCCGCCTAGGGCGGCGACCGTATCCCCGGTNNNNNGATCGCTGGGCGCCGGCT]

[+] EMBL CF196342             [CCGCCTTCGTCCGCCACGAGGCTCCAGGCCGTGGACGCGGCGGCCGTGAGGAGCAGCAGGGTGCCGCCTAGGGCGGCGACCGTATCCCCGGTNNNNNGATCGCTGGGCGCCGGCT]




>consensus_2981#1
CCGCCTTCGTCCGCCACGAGGCTCCAGGCCGTGGACGCGGCGGCCGTGAGGAGCAGCAGG
GTGCCGCCTAGGGCGGCGACCGTATCCCCGGTNNNNNGATCGCTGGGCGCCGGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2981#0      CCGGGAGAGGGTGAGCCATGGCGTGCAGCTTCCCGCCTTCTTCCGCCACGAGGCTCCAGG 60
consensus_2981#1      --------------------------------CCGCCTTCGTCCGCCACGAGGCTCCAGG 28
                                                      ******** *******************

consensus_2981#0      CCGTGGACGCGGCGGCCGTNAGGAGCAGCAGGNTGCCGCCTAGGGCGCGTACCGTNTCCC 120
consensus_2981#1      CCGTGGACGCGGCGGCCGTGAGGAGCAGCAGGGTGCCGCCTAGGGCGGCGACCGTATCCC 88
                      ******************* ************ **************   ***** ****

consensus_2981#0      CGGTGCAGAAATCGCTGGGCGCCGGCTGCAAGNCCGCGGNTGCCNNCCGGCAGNAAAGGT 180
consensus_2981#1      CGGTNNNNNGATCGCTGGGCGCCGGCT--------------------------------- 115
                      ****      *****************                                 

consensus_2981#0      GCGACGANGACCTNGCNATCTAATTT 206
consensus_2981#1      --------------------------