These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCAAAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAACTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAACTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCTCAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAACAAGNATTCTGTGCTTTGAGTATTTGCCAGGTGGANNNNTTGACAAGCATCTGGATAAAGAATCTGAATCTGATGGATTTGACTGGCGCACANGATACAATATAATCNNNNNNATTNNNNNNNNATTANNNNACNTCCATGNANNNNNNNNNNNTATTTTCCACTTNNNNNNGAAACCTGCCNNTN] [+] EMBL CF196693 [ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCAAAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAACTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAACTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCTCAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAACAAGNATTCTGTGCTTTGAGTATTTGCCAGGTGGANNNNTTGACAAGCATCTGGATAAAGAATCTGAATCTGATGGATTTGACTGGCGCACANGATACAATATAATCNNNNNNATTNNNNNNNNATTANNNNACNTCCATGNANNNNNNNNNNNTATTTTCCACTTNNNNNNGAAACCTGCCNNTN] consensusID : consensus_2997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCAAAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAACTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAACTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCTCAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAANAAGAATTCTGTGCTTTGAGTATTTGCCAGGTGGAAGCCTTGACAAGCATCTGGATAAAGAATCTGAATCTGATGGATTTGACTGGCGCACACGATACAATATAATCAAGGTGATTTCCCAAGGATTAAATTACCNNNNNGAATTNNNNAACCTATTTTCCNNNNNNNNNTGANNCC] [+] EMBL CF196663 [ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCAAAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAACTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAACTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCTCAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAANAAGAATTCTGTGCTTTGAGTATTTGCCAGGTGGAAGCCTTGACAAGCATCTGGATAAAGAATCTGAATCTGATGGATTTGACTGGCGCACACGATACAATATAATCAAGGTGATTTCCCAAGGATTAAATTACCNNNNNGAATTNNNNAACCTATTTTCCNNNNNNNNNTGANNCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2997#0 ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCA 60 consensus_2997#1 ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCA 60 ************************************************************ consensus_2997#0 AAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAA 120 consensus_2997#1 AAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAA 120 ************************************************************ consensus_2997#0 CTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAA 180 consensus_2997#1 CTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAA 180 ************************************************************ consensus_2997#0 CTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCT 240 consensus_2997#1 CTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCT 240 ************************************************************ consensus_2997#0 CAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAACA 300 consensus_2997#1 CAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAANA 300 ********************************************************** * consensus_2997#0 AGNATTCTGTGCTTTGAGTATTTGCCAGGTGGANNNNTTGACAAGCATCTGGATAAAGAA 360 consensus_2997#1 AGAATTCTGTGCTTTGAGTATTTGCCAGGTGGAAGCCTTGACAAGCATCTGGATAAAGAA 360 ** ****************************** *********************** consensus_2997#0 TCTGAATCTGATGGATTTGACTGGCGCACANGATACAATATAATCNNNNNNATTNNNNNN 420 consensus_2997#1 TCTGAATCTGATGGATTTGACTGGCGCACACGATACAATATAATCAAGGTGATTTCCCAA 420 ****************************** ************** *** consensus_2997#0 NNATTANNNNACNTCCATGNANNNNNNNNNNNTATTTTCCACTTNNNNNNGAAACCTGCC 480 consensus_2997#1 GGATTAAATTACCNNNNNGAATTNNNNAACCT-ATTTTCCNNNNNNNNNTGANNCC---- 475 **** ** * * **** ******* ***** ** ** consensus_2997#0 NNTN 484 consensus_2997#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||