These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 813 fasta sequence [AAGGGGATAGTTACATGGGATATGCATTAGAACAAATTATTGCGGCAGACTTATGATGCTGAAGACTTATTAATTTTGACAGTGAGTAAAGATAGCCCAGCACTAACACTTGGTAGGTAATGAATAGAATAACATATACTGAGTCATTATACGTTGATGTTCGAGCAATGCACCATATAGGACCTGTACAAATAAAACTGCTAAATATTTTAGGGGTTATTGGCCCATGCCTTATACAGAAAAATTAATCCTCAGAGCTGCTCAAAGATTGTATTATCTTGTACTTGATACCCCTCCTTTTACAGTGATTAAAGAGCTCCTTTCTATTCACATAATGCTTCATATCTACCATACCATACCTGAATGTTCACTTATTAGCACCTGAATTAGGAATAAAGTGGATGATTGATGGGAATGAGATATTCCTTTTTTTGCTTTTATTTTTAGACCGTTATTGATTCGCTATCATAATGCCTCATATTCACTACAATGTTGACAATCCGATAGCCGGCATCATAGCTTTCAGACTGATCTTATCCATGAGTGATGAGTAGACAACAAAATACCCCGCTATTCAGGCTTAATGATTATTCTATAAACTGAGCAAATGTGAAACGCAGAACCGCTTGATGCCAAGTTACCCCCGGACTTTTCCAAATTAAAAGCACAGTCCAAAGGAATACTCCCTTTATACCCACCCTTGCTAGTCGAACAACACATTGCACAATCCCCAGTTTTTCGCAACTACCACAGTCGGGTGCACCGTCCCCCCTCTTTGCCTAGATCCACTTCAATTCTGACAGGGAATAAACT] [+] EMBL CA764859 [AAGGGGATAGTTACATGGGATATGCATTAGAACAAATTATTGCGGCAGACTTATGATGCTGAAGACTTATTAATTTTGACAGTGAGTAAAGATAGCCCAGCACTAACACTTGGTAGGTAATGAATAGAATAACATATACTGAGTCATTATACGTTGATGTTCGAGCAATGCACCATATAGGACCTGTACAAATAAAACTGCTAAATATTTTAGGGGTTATTGGCCCATGCCTTATACAGAAAAATTAATCCTCAGAGCTGCTCAAAGATTGTATTATCTTGTACTTGATACCCCTCCTTTTACAGTGATTAAAGAGCTCCTTTCTATTCACATAATGCTTCATATCTACCATACCATACCTGAATGTTCACTTATTAGCACCTGAATTAGGAATAAAGTGGATGATTGATGGGAATGAGATATTCCTTTTTTTGCTTTTATTTTTAGACCGTTATTGATTCGCTATCATAATGCCTCATATTCACTACAATGTTGACAATCCGATAGCCGGCATCATAGCTTTCAGACTGATCTTATCCATGAGTGATGAGTAGACAACAAAATACCCCGCTATTCAGGCTTAATGATTATTCTATAAACTGAGCAAATGTGAAACGCAGAACCGCTTGATGCCAAGTTACCCCCGGACTTTTCCAAATTAAAAGCACAGTCCAAAGGAATACTCCCTTTATACCCACCCTTGCTAGTCGAACAACACATTGCACAATCCCCAGTTTTTCGCAACTACCACAGTCGGGTGCACCGTCCCCCCTCTTTGCCTAGATCCACTTCAATTCTGACAGGGAATAAACT] consensusID : consensus_2999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [AAGGGGATAGTTACATGGTATATGCATTAGAACAAAATTATTGCGGCAGAATATGTTGCTGAAACTTATTAATTTTGTGATTGTGTAAAGTTGGAGCAGTCCTAACACTTGATAGGTAATGAATAGAATAACATATACTGAATCATTATTTGTTGATGTTCGTGCAATGCAAATCAGAGGACCTGTACAAATAAATATGCGAAATATTTTTGGTGTTATTGTCCCATGTCTTCTAGTGATAAATTAATCCTCAAAGTTCCTCAAAGTTTGTTTATCTTGTACTTGATCTCCCTCCTTTTCAGGGCATTAGAGTGTTCCTTTTTATTCACAAATCCTTCAAATCTACCATACCATACCTGAAATTCACTTATTAGCACCTGAATTTGGAATAATGTGGATGATTTATGGGAA] [+] EMBL CB096661 [AAGGGGATAGTTACATGGTATATGCATTAGAACAAAATTATTGCGGCAGAATATGTTGCTGAAACTTATTAATTTTGTGATTGTGTAAAGTTGGAGCAGTCCTAACACTTGATAGGTAATGAATAGAATAACATATACTGAATCATTATTTGTTGATGTTCGTGCAATGCAAATCAGAGGACCTGTACAAATAAATATGCGAAATATTTTTGGTGTTATTGTCCCATGTCTTCTAGTGATAAATTAATCCTCAAAGTTCCTCAAAGTTTGTTTATCTTGTACTTGATCTCCCTCCTTTTCAGGGCATTAGAGTGTTCCTTTTTATTCACAAATCCTTCAAATCTACCATACCATACCTGAAATTCACTTATTAGCACCTGAATTTGGAATAATGTGGATGATTTATGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2999#0 AAGGGGATAGTTACATGGGATATGCATTAGAACAAA-TTATTGCGGCAGACTTATGATGC 59 consensus_2999#1 AAGGGGATAGTTACATGGTATATGCATTAGAACAAAATTATTGCGGCAGAAT-ATGTTGC 59 ****************** ***************** ************* * *** *** consensus_2999#0 TGAAGACTTATTAATTTTGACAGTGAGTAAAGATAGCCCAGCACTAACACTTGGTAGGTA 119 consensus_2999#1 TGAA-ACTTATTAATTTTGTGATTGTGTAAAGTTGGAGCAGTCCTAACACTTGATAGGTA 118 **** ************** * ** ****** * * *** ********** ****** consensus_2999#0 ATGAATAGAATAACATATACTGAGTCATTATACGTTGATGTTCGAGCAATGCACCATATA 179 consensus_2999#1 ATGAATAGAATAACATATACTGAATCATTATTTGTTGATGTTCGTGCAATGCAAATCAGA 178 *********************** ******* *********** ******** * * consensus_2999#0 GGACCTGTACAAATAAAACTGCTAAATATTTTAGGGGTTATTGGCCCATGCCTTATACAG 239 consensus_2999#1 GGACCTGTACAAATAAATATGCGAAATATTTTTGGTGTTATTGTCCCATGTCTTCTAGTG 238 ***************** *** ********* ** ******* ****** *** ** * consensus_2999#0 AAAAATTAATCCTCAGAGCTGCTCAAAGATTGTATTATCTTGTACTTGATACCCCTCCTT 299 consensus_2999#1 ATAAATTAATCCTCAAAGTTCCTCAAAGTTTGT-TTATCTTGTACTTGATCTCCCTCCTT 297 * ************* ** * ******* **** **************** ******** consensus_2999#0 TTACAGTGATTAAAGAGCTCCTTTCTATTCACATAATGCTTCATATCTACCATACCATAC 359 consensus_2999#1 TTCAGGGCATTAGAGTGTTCCTTTTTATTCACA-AATCCTTCAAATCTACCATACCATAC 356 ** * **** ** * ****** ******** *** ***** **************** consensus_2999#0 CTGAATGTTCACTTATTAGCACCTGAATTAGGAATAAAGTGGATGATTGATGGGAATGAG 419 consensus_2999#1 CTGAA-ATTCACTTATTAGCACCTGAATTTGGAATAATGTGGATGATTTATGGGAA---- 411 ***** ********************** ******* ********** ******* consensus_2999#0 ATATTCCTTTTTTTGCTTTTATTTTTAGACCGTTATTGATTCGCTATCATAATGCCTCAT 479 consensus_2999#1 ------------------------------------------------------------ consensus_2999#0 ATTCACTACAATGTTGACAATCCGATAGCCGGCATCATAGCTTTCAGACTGATCTTATCC 539 consensus_2999#1 ------------------------------------------------------------ consensus_2999#0 ATGAGTGATGAGTAGACAACAAAATACCCCGCTATTCAGGCTTAATGATTATTCTATAAA 599 consensus_2999#1 ------------------------------------------------------------ consensus_2999#0 CTGAGCAAATGTGAAACGCAGAACCGCTTGATGCCAAGTTACCCCCGGACTTTTCCAAAT 659 consensus_2999#1 ------------------------------------------------------------ consensus_2999#0 TAAAAGCACAGTCCAAAGGAATACTCCCTTTATACCCACCCTTGCTAGTCGAACAACACA 719 consensus_2999#1 ------------------------------------------------------------ consensus_2999#0 TTGCACAATCCCCAGTTTTTCGCAACTACCACAGTCGGGTGCACCGTCCCCCCTCTTTGC 779 consensus_2999#1 ------------------------------------------------------------ consensus_2999#0 CTAGATCCACTTCAATTCTGACAGGGAATAAACT 813 consensus_2999#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||