Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3016 cluster # 3016       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3016#0 length = 1157 sequences # 2  

consensusID : consensus_3016#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1157
fasta sequence
                              [CCTAACCCTCCTCCGGAGCCGGAGGAGGAGGAGGAGGTGTCGTCCCCTCCCCCGCCCCCGCCTCCTCCCCCCGGCTTCCTCTCCGACTCCTCCTCCGATGACGAGGAGGGCGGGGACCTCGACCTCGGGATGGGGGGCATGGACGCCGCCGCCGCCCGCGCCTACCTCAGCCGCCTCGTCCACCACCACCTCTACGACGACGAGCCCATCGACGTCGCGGCCGCCGCGGTGTCCCTGCTGCAGCGGAGCGGCCTCCACCAGGGCGGCGGCGGCGGCGAGAGCGCCCCGGCCGCCGCCGCGTCCATCGCCGCGCTGCCCACGGTCGAGGTGTCCGAGCCCGCCACGGCCTGCGCCATCTGCAAGGACGACCTCCCCCTCGCTGCCCCCGCCCGGAGGCTCCCCTGCGGCCACCTCTACCACTCCGAATGCATCGTGCAGTGGCTGGAGATGCGCAACTCCTGCCCCGTCTGCCGCTCCCGCCTCCCGTCCGACGAGCCCCAGGACGCGGCGGCGCCGTCTGACCCGGGCCCCGCGCCCATGCGGATCACGATCAGGCTCAGCACCAACCGACGACGCGTCCGCACCAGCAGCGATGCGGCTCCGCCCGTCGCGGCGTCGCCCACCCAGCTCGCGCAGGCCGTGACCGGGGAAGGAGGTGGTGGACCTGCGAATAGCACGGAGACTGTGTCGTCTGAGTGGCCACCGCCCTCTGAGTCCGATGCCGTCATGTCAGACGCCCGTGAGGGCCAGAGATTCTTCGATTGAACCAGAGCTTAGAGATGCAGGTGATAAGGAAGCTGTTGTTAGCTGTCAACCAAGAAGAGTAGAAAGAAGGCAACCATATGCCCTAGTTCTTTGAGGTTTCTGCTTTTGCTTGAGCTAGTTGCCTCAGCAAAAGCACCTTTCTCGCCGGATAAAGGCTTATTGATAGATGGTCGAATTAAGTTGTCCTATGAAGAGACCAAGGGCATCGTTGCATTGCTTCTCAATACCTTGTACATTGGTCAAACTTGTTTCTTTTAGCAATTAGCAATAAATATATGTATACATGGTTGTGTTTGTACTTTACCGGTTACTCTTCAACTTGAGGCAGGATATAGATGAGAACCTACTGGTGTCTCCATTGCACTCTACTTTGTTGATGAATGATGAAGCAG]

[+] EMBL AK073370             [CCTAACCCTCCTCCGGAGCCGGAGGAGGAGGAGGAGGTGTCGTCCCCTCCCCCGCCCCCGCCTCCTCCCCCCGGCTTCCTCTCCGACTCCTCCTCCGATGACGAGGAGGGCGGGGACCTCGACCTCGGGATGGGGGGCATGGACGCCGCCGCCGCCCGCGCCTACCTCAGCCGCCTCGTCCACCACCACCTCTACGACGACGAGCCCATCGACGTCGCGGCCGCCGCGGTGTCCCTGCTGCAGCGGAGCGGCCTCCACCAGGGCGGCGGCGGCGGCGAGAGCGCCCCGGCCGCCGCCGCGTCCATCGCCGCGCTGCCCACGGTCGAGGTGTCCGAGCCCGCCACGGCCTGCGCCATCTGCAAGGACGACCTCCCCCTCGCTGCCCCCGCCCGGAGGCTCCCCTGCGGCCACCTCTACCACTCCGAATGCATCGTGCAGTGGCTGGAGATGCGCAACTCCTGCCCCGTCTGCCGCTCCCGCCTCCCGTCCGACGAGCCCCAGGACGCGGCGGCGCCGTCTGACCCGGGCCCCGCGCCCATGCGGATCACGATCAGGCTCAGCACCAACCGACGACGCGTCCGCACCAGCAGCGATGCGGCTCCGCCCGTCGCGGCGTCGCCCACCCAGCTCGCGCAGGCCGTGACCGGGGAAGGAGGTGGTGGACCTGCGAATAGCACGGAGACTGTGTCGTCTGAGTGGCCACCGCCCTCTGAGTCCGATGCCGTCATGTCAGACGCCCGTGAGGGCCAGAGATTCTTCGATTGAACCAGAGCTTAGAGATGCAGGTGATAAGGAAGCTGTTGTTAGCTGTCAACCAAGAAGAGTAGAAAGAAGGCAACCATATGCCCTAGTTCTTTGAGGTTTCTGCTTTTGCTTGAGCTAGTTGCCTCAGCAAAAGCACCTTTCTCGCCGGATAAAGGCTTATTGATAGATGGTCGAATTAAGTTGTCCTATGAAGAGACCAAGGGCATCGTTGCATTGCTTCTCAATACCTTGTACATTGGTCAAACTTGTTTCTTTTAGCAATTAGCAATAAATATATGTATACATGGTTGTGTTTGTACTTTACCGGTTACTCTTCAACTTGAGGCAGGATATAGATGAGAACCTACTGGTGTCTCCATTGCACTCTACTTTGTTGATGAATGATGAAGCAG]
[+] EMBL CA764938             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTGCATTGCTTCTCAATACCTTGTACATTGGTCAAACTTGTTTCTTTTAGCAATTAGCAATAAATATATGTATACATGGTTGTGTTTGTACTTTACCGGTTACTCTTCAACTTGAGGCAGGATATAGATGAGAACCTACTGGTG                                        ]


>consensus_3016#0 CCTAACCCTCCTCCGGAGCCGGAGGAGGAGGAGGAGGTGTCGTCCCCTCCCCCGCCCCCG CCTCCTCCCCCCGGCTTCCTCTCCGACTCCTCCTCCGATGACGAGGAGGGCGGGGACCTC GACCTCGGGATGGGGGGCATGGACGCCGCCGCCGCCCGCGCCTACCTCAGCCGCCTCGTC CACCACCACCTCTACGACGACGAGCCCATCGACGTCGCGGCCGCCGCGGTGTCCCTGCTG CAGCGGAGCGGCCTCCACCAGGGCGGCGGCGGCGGCGAGAGCGCCCCGGCCGCCGCCGCG TCCATCGCCGCGCTGCCCACGGTCGAGGTGTCCGAGCCCGCCACGGCCTGCGCCATCTGC AAGGACGACCTCCCCCTCGCTGCCCCCGCCCGGAGGCTCCCCTGCGGCCACCTCTACCAC TCCGAATGCATCGTGCAGTGGCTGGAGATGCGCAACTCCTGCCCCGTCTGCCGCTCCCGC CTCCCGTCCGACGAGCCCCAGGACGCGGCGGCGCCGTCTGACCCGGGCCCCGCGCCCATG CGGATCACGATCAGGCTCAGCACCAACCGACGACGCGTCCGCACCAGCAGCGATGCGGCT CCGCCCGTCGCGGCGTCGCCCACCCAGCTCGCGCAGGCCGTGACCGGGGAAGGAGGTGGT GGACCTGCGAATAGCACGGAGACTGTGTCGTCTGAGTGGCCACCGCCCTCTGAGTCCGAT GCCGTCATGTCAGACGCCCGTGAGGGCCAGAGATTCTTCGATTGAACCAGAGCTTAGAGA TGCAGGTGATAAGGAAGCTGTTGTTAGCTGTCAACCAAGAAGAGTAGAAAGAAGGCAACC ATATGCCCTAGTTCTTTGAGGTTTCTGCTTTTGCTTGAGCTAGTTGCCTCAGCAAAAGCA CCTTTCTCGCCGGATAAAGGCTTATTGATAGATGGTCGAATTAAGTTGTCCTATGAAGAG ACCAAGGGCATCGTTGCATTGCTTCTCAATACCTTGTACATTGGTCAAACTTGTTTCTTT TAGCAATTAGCAATAAATATATGTATACATGGTTGTGTTTGTACTTTACCGGTTACTCTT CAACTTGAGGCAGGATATAGATGAGAACCTACTGGTGTCTCCATTGCACTCTACTTTGTT GATGAATGATGAAGCAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)