These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1572 fasta sequence [GGGGATCGCAAATGGGGTGGGCGCACGAGACGGTGGCCATGGAGGAGTTGCTCGGCTTGGTGCGGGGCTTCGTCGACGTCCTCGTCCTCGCCGGCGGCCGCACCTCGTCTGGCGCCGCCGCCACCTGGCGCTCCGGTGACGTCAAGAAGGCCCTCCAATGGGCCCTCTTCTTCGAGGAGGTTTTCAAGAACCTGCGTGACGATGGTCAGTACGATGAGTCTGCAAGTGAGCTCGATGCTGCACTCGTTCAACTCGCTTCAAGCCCGAATTTCCCCAAGGGTATTGAGGATATCCGATCAAAAACACTTGCGATGGCAAGAGAGTTGGTTGTGAAGCATTTTCTGAAAACAACGAATGCGGAGAATTTAGGTGCTGTACTTCAAGCAGTTGTTGAGATGGATATGGATGGCATTTCTGCTAGTGGTGAATGCAATGTGTGCCAAGAGTATGTGCAATCGATTTTAGATATGAATTTACCTAGTTTGATGCGAACCAAGAATGCCCGTGATGTTGGACATTCCACTAGCTCTGATGAATTTTGTGAAGAATCCTTGTTTACGGGTAATTCACAGATTCTACTTAAAGAACTACAGAAGAAGCTGGATTCAGGATCGTGTATTTCTTTGGCTGAGAGAGAACTGAACACACTTCTAAAAAGCATGAAAAAGGACAGCTTTGATAGTGCAGGAAGTACATTGTGCACCTCAGCAACTGCTCAGAAAACACAAATCATCGACAAGTTTATCCTGTGGAAGCAATGGAAAGCAAAGTGTTTGTCGTACTTGCTTGATGAGCGTACCATTCGGATCATGTCAGGAACTAATATGATCTTTAATGCTCCCAAGGAGCAGTGGATGGGATTGTTTGAACCATTAAAAGTTTCTGCAGATTCTAGTCAAAGTGGCATCATTGAAGTCATGGAGCTATGCTTGTTGGGATTGGTTGCAAGGCAATGGAACTCATTAATAGAGAGCATCATGTCACATACTTTTAGTTCCTTTCCTATATCAAAACAATATGCTGATCTGCACCAGTTGCTTCAAGGAACAACTCAGGATGAATGCCAAGACAAGCTTCTTGGTTTCAAGGAGATGGATATTTGTGAGTATGCAAGGCAATCATTAGAGAGCGAACCGTACATATTATGGTTTCTACCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGTTTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAAAATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGATTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGTAGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGAGTAATTTATTTTCCAAACTGGCCGCTGTAGTTATTTCCATGTATGATATACATTTTTGCGTGATGGAAAATTTAGCCAGATGACACATTGACTGACAGTTCATGCAGATTGTCAAACTGGATATTGAATAGA] [+] EMBL AK066382 [GGGGATCGCAAATGGGGTGGGCGCACGAGACGGTGGCCATGGAGGAGTTGCTCGGCTTGGTGCGGGGCTTCGTCGACGTCCTCGTCCTCGCCGGCGGCCGCACCTCGTCTGGCGCCGCCGCCACCTGGCGCTCCGGTGACGTCAAGAAGGCCCTCCAATGGGCCCTCTTCTTCGAGGAGGTTTTCAAGAACCTGCGTGACGATGGTCAGTACGATGAGTCTGCAAGTGAGCTCGATGCTGCACTCGTTCAACTCGCTTCAAGCCCGAATTTCCCCAAGGGTATTGAGGATATCCGATCAAAAACACTTGCGATGGCAAGAGAGTTGGTTGTGAAGCATTTTCTGAAAACAACGAATGCGGAGAATTTAGGTGCTGTACTTCAAGCAGTTGTTGAGATGGATATGGATGGCATTTCTGCTAGTGGTGAATGCAATGTGTGCCAAGAGTATGTGCAATCGATTTTAGATATGAATTTACCTAGTTTGATGCGAACCAAGAATGCCCGTGATGTTGGACATTCCACTAGCTCTGATGAATTTTGTGAAGAATCCTTGTTTACGGGTAATTCACAGATTCTACTTAAAGAACTACAGAAGAAGCTGGATTCAGGATCGTGTATTTCTTTGGCTGAGAGAGAACTGAACACACTTCTAAAAAGCATGAAAAAGGACAGCTTTGATAGTGCAGGAAGTACATTGTGCACCTCAGCAACTGCTCAGAAAACACAAATCATCGACAAGTTTATCCTGTGGAAGCAATGGAAAGCAAAGTGTTTGTCGTACTTGCTTGATGAGCGTACCATTCGGATCATGTCAGGAACTAATATGATCTTTAATGCTCCCAAGGAGCAGTGGATGGGATTGTTTGAACCATTAAAAGTTTCTGCAGATTCTAGTCAAAGTGGCATCATTGAAGTCATGGAGCTATGCTTGTTGGGATTGGTTGCAAGGCAATGGAACTCATTAATAGAGAGCATCATGTCACATACTTTTAGTTCCTTTCCTATATCAAAACAATATGCTGATCTGCACCAGTTGCTTCAAGGAACAACTCAGGATGAATGCCAAGACAAGCTTCTTGGTTTCAAGGAGATGGATATTTGTGAGTATGCAAGGCAATCATTAGAGAGCGAACCGTACATATTATGGTTTCTACCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGTTTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAAAATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGATTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGTAGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGAGTAATTTATTTTCCAAACTGGCCGCTGTAGTTATTTCCATGTATGATATACATTTTTGCGTGATGGAAAATTTAGCCAGATGACACATTGACTGACAGTTCATGCAGATTGTCAAACTGGATATTGAATAGA] consensusID : consensus_3017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [CCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGTTTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAAAATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGATTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGTAGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGAATTGAAGCGAATCATCTTAGGGGTACATGAAACAGGCCTACATCAACTATGAATCAGCTTCGCAATGGAAAAGTTCCCCAATATCTTTCGCCAGCTATAACTGTAGTACCAGAACTCTCTGAAGTTACATTTCCTAGTTTTTCAGAGCATAGANNATCCTATATCGAAAGGGAGCAGTGTNGTNNNTCTATCAACTCATTTGATGCTTCTACTCNNNTG] [+] EMBL CF197100 [CCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGTTTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAAAATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGATTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGTAGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGAATTGAAGCGAATCATCTTAGGGGTACATGAAACAGGCCTACATCAACTATGAATCAGCTTCGCAATGGAAAAGTTCCCCAATATCTTTCGCCAGCTATAACTGTAGTACCAGAACTCTCTGAAGTTACATTTCCTAGTTTTTCAGAGCATAGANNATCCTATATCGAAAGGGAGCAGTGTNGTNNNTCTATCAACTCATTTGATGCTTCTACTCNNNTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3017#0 GGGGATCGCAAATGGGGTGGGCGCACGAGACGGTGGCCATGGAGGAGTTGCTCGGCTTGG 60 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 TGCGGGGCTTCGTCGACGTCCTCGTCCTCGCCGGCGGCCGCACCTCGTCTGGCGCCGCCG 120 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 CCACCTGGCGCTCCGGTGACGTCAAGAAGGCCCTCCAATGGGCCCTCTTCTTCGAGGAGG 180 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 TTTTCAAGAACCTGCGTGACGATGGTCAGTACGATGAGTCTGCAAGTGAGCTCGATGCTG 240 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 CACTCGTTCAACTCGCTTCAAGCCCGAATTTCCCCAAGGGTATTGAGGATATCCGATCAA 300 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 AAACACTTGCGATGGCAAGAGAGTTGGTTGTGAAGCATTTTCTGAAAACAACGAATGCGG 360 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 AGAATTTAGGTGCTGTACTTCAAGCAGTTGTTGAGATGGATATGGATGGCATTTCTGCTA 420 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 GTGGTGAATGCAATGTGTGCCAAGAGTATGTGCAATCGATTTTAGATATGAATTTACCTA 480 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 GTTTGATGCGAACCAAGAATGCCCGTGATGTTGGACATTCCACTAGCTCTGATGAATTTT 540 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 GTGAAGAATCCTTGTTTACGGGTAATTCACAGATTCTACTTAAAGAACTACAGAAGAAGC 600 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 TGGATTCAGGATCGTGTATTTCTTTGGCTGAGAGAGAACTGAACACACTTCTAAAAAGCA 660 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 TGAAAAAGGACAGCTTTGATAGTGCAGGAAGTACATTGTGCACCTCAGCAACTGCTCAGA 720 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 AAACACAAATCATCGACAAGTTTATCCTGTGGAAGCAATGGAAAGCAAAGTGTTTGTCGT 780 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 ACTTGCTTGATGAGCGTACCATTCGGATCATGTCAGGAACTAATATGATCTTTAATGCTC 840 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 CCAAGGAGCAGTGGATGGGATTGTTTGAACCATTAAAAGTTTCTGCAGATTCTAGTCAAA 900 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 GTGGCATCATTGAAGTCATGGAGCTATGCTTGTTGGGATTGGTTGCAAGGCAATGGAACT 960 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 CATTAATAGAGAGCATCATGTCACATACTTTTAGTTCCTTTCCTATATCAAAACAATATG 1020 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 CTGATCTGCACCAGTTGCTTCAAGGAACAACTCAGGATGAATGCCAAGACAAGCTTCTTG 1080 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 GTTTCAAGGAGATGGATATTTGTGAGTATGCAAGGCAATCATTAGAGAGCGAACCGTACA 1140 consensus_3017#1 ------------------------------------------------------------ consensus_3017#0 TATTATGGTTTCTACCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGT 1200 consensus_3017#1 --------------CCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGT 46 ********************************************** consensus_3017#0 TTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAA 1260 consensus_3017#1 TTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAA 106 ************************************************************ consensus_3017#0 AATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGA 1320 consensus_3017#1 AATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGA 166 ************************************************************ consensus_3017#0 TTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGT 1380 consensus_3017#1 TTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGT 226 ************************************************************ consensus_3017#0 AGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGA 1440 consensus_3017#1 AGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGA 286 ************************************************************ consensus_3017#0 GT---AATTTATTTTCCAAACTGGCCGCTGTAGTTATTTCCATGTATGATATACATTTTT 1497 consensus_3017#1 ATTGAAGCGAATCATCTTAGGGGTACATGAAACAGGCCTACATCAACTATGAATCAGCTT 346 * * ** ** * * * * * *** * ** * ** consensus_3017#0 GCGTGATGGAAAATTTAGCCAG-ATGACACATTGACTG--ACAGTTCATGCAGA-TTGTC 1553 consensus_3017#1 -CGCAATGGAAAAGTTCCCCAATATCTTTCGCCAGCTATAACTGTAGTACCAGAACTCTC 405 ** ******** ** *** ** * ** ** ** **** * ** consensus_3017#0 AAACTGGATATTGAATAGA----------------------------------------- 1572 consensus_3017#1 TGAAGTTACATTTCCTAGTTTTTCAGAGCATAGANNATCCTATATCGAAAGGGAGCAGTG 465 * * *** *** consensus_3017#0 ---------------------------------------- consensus_3017#1 TNGTNNNTCTATCAACTCATTTGATGCTTCTACTCNNNTG 505 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||