These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3023#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [ATACACTTCACCTTCAGTCACCATGCATTAGTAGCGCCCGCCCGCCGATATCGCTAAAGAACTTCGCGACGCGTCCAATGTATTCCGGATGCGAAACGCTGGAAAGACGCAGCGCCTCACCTTCGGCAAATGGCGTCGCCAGTTTTTTCAGGGTATGTGCACTGTTACGCACGCCCATCCGCCAGCTCATTTCCAGTTGTTTTTCCAGCGGCGGGCAAAACGCGCCGACTGGCATAAACACCGGTTGATGTTCGTCGAGCTTCGCCTGCGCCTGCCCGCCGTGCAACGTTGGCGTAATACCCATCAATTCAAAAATGGTTTCAGTCAGCACGCGGGTTGGATCTTCGCTAACCCCGTGAACCACCACAGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCTGTTTACGCGCGCCGTTGTAACTGGGGATGACAATCGGCATCGGCTTGCCTGCTGGCGGCGTCAGCTTGATGGTGTGATTTTGCATGGCTTCGTAAAAGCCGAGCATCTCTGCTTCCCCTTCTCCTTTGATACGCAGCGCAATCAATACGCCGCCCAACTCAAGGTCAGGGACTTCACCATTGAGCATATGAGCATACAGACCGCGCGCAGTATCCCGGTCTAAATCGCGCGCGTGGTTTTTCCCG] [+] EMBL CF306070 [ATACACTTCACCTTCAGTCACCATGCATTAGTAGCGCCCGCCCGCCGATATCGCTAAAGAACTTCGCGACGCGTCCAATGTATTCCGGATGCGAAACGCTGGAAAGACGCAGCGCCTCACCTTCGGCAAATGGCGTCGCCAGTTTTTTCAGGGTATGTGCACTGTTACGCACGCCCATCCGCCAGCTCATTTCCAGTTGTTTTTCCAGCGGCGGGCAAAACGCGCCGACTGGCATAAACACCGGTTGATGTTCGTCGAGCTTCGCCTGCGCCTGCCCGCCGTGCAACGTTGGCGTAATACCCATCAATTCAAAAATGGTTTCAGTCAGCACGCGGGTTGGATCTTCGCTAACCCCGTGAACCACCACAGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCTGTTTACGCGCGCCGTTGTAACTGGGGATGACAATCGGCATCGGCTTGCCTGCTGGCGGCGTCAGCTTGATGGTGTGATTTTGCATGGCTTCGTAAAAGCCGAGCATCTCTGCTTCCCCTTCTCCTTTGATACGCAGCGCAATCAATACGCCGCCCAACTCAAGGTCAGGGACTTCACCATTGAGCATATGAGCATACAGACCGCGCGCAGTATCCCGGTCTAAATCGCGCGCGTGGTTTTTCCCG] consensusID : consensus_3023#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence [AGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCTGTTTANNNNNGCCGTTGTAACTGGGGATGNNNATCGGCATCGGCTTGCCTGCTGGCGGCGTCNNNTTGATGNNNTGATTTTGCATGGCTTNNNAAAAGCCGAGCATCTCTGCTTCCC] [+] EMBL CF197207 [AGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCTGTTTANNNNNGCCGTTGTAACTGGGGATGNNNATCGGCATCGGCTTGCCTGCTGGCGGCGTCNNNTTGATGNNNTGATTTTGCATGGCTTNNNAAAAGCCGAGCATCTCTGCTTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3023#0 ATACACTTCACCTTCAGTCACCATGCATTAGTAGCGCCCGCCCGCCGATATCGCTAAAGA 60 consensus_3023#1 ------------------------------------------------------------ consensus_3023#0 ACTTCGCGACGCGTCCAATGTATTCCGGATGCGAAACGCTGGAAAGACGCAGCGCCTCAC 120 consensus_3023#1 ------------------------------------------------------------ consensus_3023#0 CTTCGGCAAATGGCGTCGCCAGTTTTTTCAGGGTATGTGCACTGTTACGCACGCCCATCC 180 consensus_3023#1 ------------------------------------------------------------ consensus_3023#0 GCCAGCTCATTTCCAGTTGTTTTTCCAGCGGCGGGCAAAACGCGCCGACTGGCATAAACA 240 consensus_3023#1 ------------------------------------------------------------ consensus_3023#0 CCGGTTGATGTTCGTCGAGCTTCGCCTGCGCCTGCCCGCCGTGCAACGTTGGCGTAATAC 300 consensus_3023#1 ------------------------------------------------------------ consensus_3023#0 CCATCAATTCAAAAATGGTTTCAGTCAGCACGCGGGTTGGATCTTCGCTAACCCCGTGAA 360 consensus_3023#1 ------------------------------------------------------------ consensus_3023#0 CCACCACAGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCT 420 consensus_3023#1 -------AGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCT 53 ***************************************************** consensus_3023#0 GTTTACGCGCGCCGTTGTAACTGGGGATGACAATCGGCATCGGCTTGCCTGCTGGCGGCG 480 consensus_3023#1 GTTTANNNNNGCCGTTGTAACTGGGGATGNNNATCGGCATCGGCTTGCCTGCTGGCGGCG 113 ***** ******************* **************************** consensus_3023#0 TCAGCTTGATGGTGTGATTTTGCATGGCTTCGTAAAAGCCGAGCATCTCTGCTTCCCCTT 540 consensus_3023#1 TCNNNTTGATGNNNTGATTTTGCATGGCTTNNNAAAAGCCGAGCATCTCTGCTTCCC--- 170 ** ****** **************** ************************ consensus_3023#0 CTCCTTTGATACGCAGCGCAATCAATACGCCGCCCAACTCAAGGTCAGGGACTTCACCAT 600 consensus_3023#1 ------------------------------------------------------------ consensus_3023#0 TGAGCATATGAGCATACAGACCGCGCGCAGTATCCCGGTCTAAATCGCGCGCGTGGTTTT 660 consensus_3023#1 ------------------------------------------------------------ consensus_3023#0 TCCCG 665 consensus_3023#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||