These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 755 fasta sequence [AAGGGGGATATAACAAAGATNAAGGAGAAAAGTTTTGATCCTATGGTTGCTTCTGAGCCACTGAAACGGTCTCACAGCCCGCTGACTAACTTCCTAGTTCCTGAACAATTGTGTAAGGAGAAACAGTTTGAAACCGATATAGCAAAGATAAAAGAGAAAAGTTTTGATCATCTAGTTGCTTATGAGCCGCTGAAAAGGTCTCACAGCCCGCTGGCTAACTTCTTAGTTCCTAAACAAATGGCGAAAATTGATACTTATTACAAGAAAGTTTAGATGCATGTTTACCAAGTGAAGATAGAAAACTGATCACTCCCATACATGTTAAGTTAGAAGGAGACACCACTTTGGAAAGTAAAGAAACATTAAAACGTGAAACCAAGGAGGAAACATACACTATGGAATCTTTTGGTAGTTATCAAGTTGAAAGAAAAGTAAATACTTATCAGACTGTGTCAGAAGAAACGCATAATCCAGATATCTCTGCAAAGCCCACTGACGAAATAGTTTCAAAGAACATTATCAAAATAAACAGTGTCAAGGAAAATCAAGGAGTCCTGAGAGCTATATATAATATGCCAATACATTATCATGCAGCAATCCTGTGTTTTATATTAATTGTATATAATCTTATATTTCAGTATATTAAAAAGAACTGTCATGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACATGTATGCAAATATACTAGTCATTGAGTAGCAACAGNTACTGGTGATATGAATTAC] [+] EMBL CA764970 [AAGGGGGATATAACAAAGATNAAGGAGAAAAGTTTTGATCCTATGGTTGCTTCTGAGCCACTGAAACGGTCTCACAGCCCGCTGACTAACTTCCTAGTTCCTGAACAATTGTGTAAGGAGAAACAGTTTGAAACCGATATAGCAAAGATAAAAGAGAAAAGTTTTGATCATCTAGTTGCTTATGAGCCGCTGAAAAGGTCTCACAGCCCGCTGGCTAACTTCTTAGTTCCTAAACAAATGGCGAAAATTGATACTTATTACAAGAAAGTTTAGATGCATGTTTACCAAGTGAAGATAGAAAACTGATCACTCCCATACATGTTAAGTTAGAAGGAGACACCACTTTGGAAAGTAAAGAAACATTAAAACGTGAAACCAAGGAGGAAACATACACTATGGAATCTTTTGGTAGTTATCAAGTTGAAAGAAAAGTAAATACTTATCAGACTGTGTCAGAAGAAACGCATAATCCAGATATCTCTGCAAAGCCCACTGACGAAATAGTTTCAAAGAACATTATCAAAATAAACAGTGTCAAGGAAAATCAAGGAGTCCTGAGAGCTATATATAATATGCCAATACATTATCATGCAGCAATCCTGTGTTTTATATTAATTGTATATAATCTTATATTTCAGTATATTAAAAAGAACTGTCATGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACATGTATGCAAATATACTAGTCATTGAGTAGCAACAGNTACTGGTGATATGAATTAC] consensusID : consensus_3026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence [ACGAGACAAAGGGGGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACATGTATGCATATATACTAGTCATTGAGTAGCAACAGTTACTGTTGATATGAATTACTACTTCTCGTTTAAGTGTATTTAAGAATGAAATAGGAAGATGTAAATAATCAATGCATATACGTTATATTCCTCTCTTCTTTAGTGTAACATCAGTAATTATCCTTAACATTTTGGTGCTTTTTACACTAAAAATCAAAACGCTCGCAGTATGTATACAGTTTTGTCTAATTTATATGTAAGGCTTTTGTATACAGCTTACGGAATGTTGCAGTGAACTGTCACTAACATTAACAGCCGTTAAACCTAAATTTAACGAAATCTTAAGTAAAGAAAGAACCTTCCAATAAAAGTAGGCAGTATACATCATTTTACAAATATGATGGTGCACCAACTCTATCAATATTAGAATATAGATTAATGTATTCAAATATTTATCTCGTTATAATATTATTGGAAACATTAATATAGTGCATACGATAATATTAATCATTCTTCAGAGTTATACATACTATAAGCTCGAATAATCCTTACGTATTATTTATTAAGAAATCGCAAGCAAAATAAAATTTTTGTAAACTTTTTTTATTTTTATGTTGATGATAATGGTATTTTTAAGAACTATTTATTTAGAATTACTTATGCAATTAGCATACAACACATAATATTTATGNGTGCTTAAATAAAGTATTTTA] [+] EMBL CB096613 [ACGAGACAAAGGGGGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACATGTATGCATATATACTAGTCATTGAGTAGCAACAGTTACTGTTGATATGAATTACTACTTCTCGTTTAAGTGTATTTAAGAATGAAATAGGAAGATGTAAATAATCAATGCATATACGTTATATTCCTCTCTTCTTTAGTGTAACATCAGTAATTATCCTTAACATTTTGGTGCTTTTTACACTAAAAATCAAAACGCTCGCAGTATGTATACAGTTTTGTCTAATTTATATGTAAGGCTTTTGTATACAGCTTACGGAATGTTGCAGTGAACTGTCACTAACATTAACAGCCGTTAAACCTAAATTTAACGAAATCTTAAGTAAAGAAAGAACCTTCCAATAAAAGTAGGCAGTATACATCATTTTACAAATATGATGGTGCACCAACTCTATCAATATTAGAATATAGATTAATGTATTCAAATATTTATCTCGTTATAATATTATTGGAAACATTAATATAGTGCATACGATAATATTAATCATTCTTCAGAGTTATACATACTATAAGCTCGAATAATCCTTACGTATTATTTATTAAGAAATCGCAAGCAAAATAAAATTTTTGTAAACTTTTTTTATTTTTATGTTGATGATAATGGTATTTTTAAGAACTATTTATTTAGAATTACTTATGCAATTAGCATACAACACATAATATTTATGNGTGCTTAAATAAAGTATTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3026#0 ---------AAGGGGGATATAACAAAGATNAAG---GAGAAAAGTTTTGATCCTATGGTT 48 consensus_3026#1 ACGAGACAAAGGGGGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACATGTAT 60 * ***** * ** ** ** * * **** ** * *** * consensus_3026#0 GCTTCTGAGCCACTGAAACGGTCTCA-CAGC--CCGCTGAC-TAACTTCCTAGTTCCTGA 104 consensus_3026#1 GCATATATACTAGTCATTGAGTAGCAACAGTTACTGTTGATATGAATTACTACTTCTCGT 120 ** * * * * * * ** ** *** * * *** * * ** *** *** * consensus_3026#0 ACAATTGTGTAAGGAGAAACAGTTTGAAACCGATATAGCAAAGATAAAAGAGAAAAGTTT 164 consensus_3026#1 TTAAGTGTATTTAAGAATGAAATAGGAA---GATGTAA-ATAATCAATGCATATACGTTA 176 ** *** * * * * *** *** ** * * ** * * * *** consensus_3026#0 TGATCATCTAGTTGCTTATGAGCCGCTGAAAAGGTCTCACAGCCCGCTGGCTAACTTCTT 224 consensus_3026#1 TATTCCTCTCTTCTTTAGTGTAACATCAGTAATTATCCTTAACATTTTGGT--GCTTTTT 234 * ** *** * * ** * ** * * * *** *** ** consensus_3026#0 AGTTCCTAAAC--AAATGGCGAAAATTGATACTTATTACAAGAAAGTTTAGATGCATGTT 282 consensus_3026#1 ACACTAAAAATCAAAACGCTCGCAGTATGTATACAGTTTTGTCTAATTTATATGTAAGGC 294 * *** *** * * * ** * * * **** *** * * consensus_3026#0 TACCAAGTGAAGATAGAAAACTGATCACTCCCATACATGTTAAGTTAGAAGGAGACACCA 342 consensus_3026#1 TTT----TGTATACAGCTTACGGAATGTTGCAGTGAACT----GTCACTAACATTAACAG 346 * ** * * ** ** ** * * * * ** * * * ** consensus_3026#0 CTTTGGAAAGTAAAGAAACATTAAAACGTGAAACCAAGGAGGAAACATACACTATGGAAT 402 consensus_3026#1 CCGTTAAACCTAAAT--TTAACGAAATCTTAAGTAAAGAAAGAACCTTCCA--ATAAAAG 402 * * ** **** * *** * ** *** * *** * * ** ** ** consensus_3026#0 CTTTTGGTAGTTATCAAGTTGAAAGAAAAGTAAATACTTATCAGACTGTGTCAGAAGAAA 462 consensus_3026#1 TAGGCAGTATACATCATTTT---ACAAATATGATGGTGCACCA-ACTCTATCAATATTAG 458 *** **** ** * *** * * * ** *** * *** * * consensus_3026#0 CGCATAATCCAGATATCTCTGCAAAGCCCACTGACGAAATAGTTTCAAAGAACATTATCA 522 consensus_3026#1 AATATAGATTA-ATGTATTCAAATATTTATCTCGTTATAATATTATTGGAAACATTAATA 517 *** * ** * * * * ** * * ** ******* * consensus_3026#0 AAATAAACAGTGTCAAGGAAAATCAAGGAGTCCTGAGAGCTATATATAATATGCCAATAC 582 consensus_3026#1 TAGTGCATACGAT-----AATATTAATCATTCTTCAGAGTTATACATACTATAAGCTCGA 572 * * * * * ** ** ** * ** * **** **** *** *** consensus_3026#0 ATTATCATGCAGCAATCCTGTGTTTTATATTAATTGTATATAATCTTATATTTCAGTATA 642 consensus_3026#1 ATAATCCTTACGTA---TTATTTATTA-AGAAATCGCAAGCAAAATAAAATTTTTGTAAA 628 ** *** * * * * * * *** * *** * * ** * * **** *** * consensus_3026#0 TTAAAAAGAACTGT-CATGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACAT 701 consensus_3026#1 CTTTTTTTATTTTTATGTTGATGATAATGGTATTTTTAAGAACTATTTATTTAGAATTAC 688 * * * * * * * * * *** * ** * **** ** * consensus_3026#0 GTATGCAAATATACTAGTCATTGAGTAGCAACAGNTACTGGTGATATGAATTAC---- 755 consensus_3026#1 TTATGCAATTAGCATA--CAACACATAATATTTATGNGTGCTTAAATAAAGTATTTTA 744 ******* ** ** ** ** * ** * * ** ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||