cluster # 3029

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Oryza sativa
cluster # 3029 cluster # 3029 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3029#0 length = 1549 sequences # 1

consensus_3029#1 length = 501 sequences # 1

consensusID : consensus_3029#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1549
fasta sequence

                              [CATTCAAGACGCGCTGCCGCCGTAGCCTCCGCCGCCGCGAATGGACTGGTCAGGCCTCCCCGGCGACCTCCTCCGCCTCTTCTCCGGCCGCCTCCACGACCCACTCGACTTCCTCCGCTTCCGCGCCGTCTGCCGCGCGTGGCGCGCCGCCACCGCCGCCGCAGCGGCCTCCCCTCCTCCCTTCCTCCCATGGCTCCTTGCCCGCCCCGCCCCCATCAACCCCACCGCCGGCCCCGGCCCCTCCCTCTCCTTCTACTCCCTCTCCTCCGCCGCCCTCCGCTCCGTCGCCGCCCCCTCCGCCACCTGCTCCCTCCTCGGCCACACAAACTCCCACCTCCTCTTCTCCGACCACGGCCCCCTCCTCCTCCTCGTCAACCCCCTCACCGGCGCCGACCTCCCCCTCCCGCCTTCCCCCTTCGACGCCTTCTCCCCCATCACCCAGGGCTACTACCTCCCCGGTCCCGACTCGCCGGTGGTGCTCTACGACACCAGGAGGATCTTCTTCCACCACCCCGCCGGCGGCGGCGGCGGGTGGACGACGGTGCCGGTGGTGGACCTCGTCGCCGAGAACATGTACCACGCCGGGAAGGTGTTCGTCTGCAACGACCGCGGCCACCTCACCATCTTCGACGCCGCCACGCTTGCCGTGCTCGGTGACGCTGCGCCGCCGCCACCACCGCCGGTGACCCTGCACAGGGATGCCTTCAAGTGCTCATCCTTCGTCCCGTCCGGCGATGATCTCCTGTGCGTGATTCGGTACTTCAGGCGCAAGAACACAGAACAAGCAGGAGAATTGCTGGAGGATTGCCGTGCATTGGAGGTTCACCGGCTAGAGATTGCGGGGGAGAAATCGCGGTGGGTTCAGATGAGGAGCATTGGAGACAGAATGCTGTTCGTTGGTCTCTACCAGGGATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAATTGTGTTTACTTCTTCAAGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGCATGGAGGATGGTCAAATCGAAGAGTTGCCTGGCCCCTCAATGCATGCTTGCACTTGGTTTGTGCCAAGTTTGTCATAGCCCTCATTCGTGGACTTATAAGATAGTGCCTATTCCCGTCCGGCGATGATCTCCTGTGCGTGATTCGGTACTTCAGGAGCATTAGAGACAGAATGCTGTTCGTTGGTCTCTACCAGGGATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAATTGTGTTTACTTCTTCAAGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGGATGGAGGATGGCCAAATCGAAGAGTTGCCTGGCCCCTCGATGCATGCTTGCACTTGGTTTGTGCCAAGTTTGTCATAGCCGGGCTATGATAGCCCTCGTTCGTATAGACTTATAAGGTAATCTTCAGATAGTTTGGGTCAGGCGTTCCTCTTTTCGGTTTGAATGCATTGCTCCAAAATAATTCATGAAAATGCTGCTTTAAGACATGCAATTTTCTTGTGATATGTTAATCGAATGAAAT]

[+] EMBL AK063451             [CATTCAAGACGCGCTGCCGCCGTAGCCTCCGCCGCCGCGAATGGACTGGTCAGGCCTCCCCGGCGACCTCCTCCGCCTCTTCTCCGGCCGCCTCCACGACCCACTCGACTTCCTCCGCTTCCGCGCCGTCTGCCGCGCGTGGCGCGCCGCCACCGCCGCCGCAGCGGCCTCCCCTCCTCCCTTCCTCCCATGGCTCCTTGCCCGCCCCGCCCCCATCAACCCCACCGCCGGCCCCGGCCCCTCCCTCTCCTTCTACTCCCTCTCCTCCGCCGCCCTCCGCTCCGTCGCCGCCCCCTCCGCCACCTGCTCCCTCCTCGGCCACACAAACTCCCACCTCCTCTTCTCCGACCACGGCCCCCTCCTCCTCCTCGTCAACCCCCTCACCGGCGCCGACCTCCCCCTCCCGCCTTCCCCCTTCGACGCCTTCTCCCCCATCACCCAGGGCTACTACCTCCCCGGTCCCGACTCGCCGGTGGTGCTCTACGACACCAGGAGGATCTTCTTCCACCACCCCGCCGGCGGCGGCGGCGGGTGGACGACGGTGCCGGTGGTGGACCTCGTCGCCGAGAACATGTACCACGCCGGGAAGGTGTTCGTCTGCAACGACCGCGGCCACCTCACCATCTTCGACGCCGCCACGCTTGCCGTGCTCGGTGACGCTGCGCCGCCGCCACCACCGCCGGTGACCCTGCACAGGGATGCCTTCAAGTGCTCATCCTTCGTCCCGTCCGGCGATGATCTCCTGTGCGTGATTCGGTACTTCAGGCGCAAGAACACAGAACAAGCAGGAGAATTGCTGGAGGATTGCCGTGCATTGGAGGTTCACCGGCTAGAGATTGCGGGGGAGAAATCGCGGTGGGTTCAGATGAGGAGCATTGGAGACAGAATGCTGTTCGTTGGTCTCTACCAGGGATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAATTGTGTTTACTTCTTCAAGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGCATGGAGGATGGTCAAATCGAAGAGTTGCCTGGCCCCTCAATGCATGCTTGCACTTGGTTTGTGCCAAGTTTGTCATAGCCCTCATTCGTGGACTTATAAGATAGTGCCTATTCCCGTCCGGCGATGATCTCCTGTGCGTGATTCGGTACTTCAGGAGCATTAGAGACAGAATGCTGTTCGTTGGTCTCTACCAGGGATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAATTGTGTTTACTTCTTCAAGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGGATGGAGGATGGCCAAATCGAAGAGTTGCCTGGCCCCTCGATGCATGCTTGCACTTGGTTTGTGCCAAGTTTGTCATAGCCGGGCTATGATAGCCCTCGTTCGTATAGACTTATAAGGTAATCTTCAGATAGTTTGGGTCAGGCGTTCCTCTTTTCGGTTTGAATGCATTGCTCCAAAATAATTCATGAAAATGCTGCTTTAAGACATGCAATTTTCTTGTGATATGTTAATCGAATGAAAT]




>consensus_3029#0
CATTCAAGACGCGCTGCCGCCGTAGCCTCCGCCGCCGCGAATGGACTGGTCAGGCCTCCC
CGGCGACCTCCTCCGCCTCTTCTCCGGCCGCCTCCACGACCCACTCGACTTCCTCCGCTT
CCGCGCCGTCTGCCGCGCGTGGCGCGCCGCCACCGCCGCCGCAGCGGCCTCCCCTCCTCC
CTTCCTCCCATGGCTCCTTGCCCGCCCCGCCCCCATCAACCCCACCGCCGGCCCCGGCCC
CTCCCTCTCCTTCTACTCCCTCTCCTCCGCCGCCCTCCGCTCCGTCGCCGCCCCCTCCGC
CACCTGCTCCCTCCTCGGCCACACAAACTCCCACCTCCTCTTCTCCGACCACGGCCCCCT
CCTCCTCCTCGTCAACCCCCTCACCGGCGCCGACCTCCCCCTCCCGCCTTCCCCCTTCGA
CGCCTTCTCCCCCATCACCCAGGGCTACTACCTCCCCGGTCCCGACTCGCCGGTGGTGCT
CTACGACACCAGGAGGATCTTCTTCCACCACCCCGCCGGCGGCGGCGGCGGGTGGACGAC
GGTGCCGGTGGTGGACCTCGTCGCCGAGAACATGTACCACGCCGGGAAGGTGTTCGTCTG
CAACGACCGCGGCCACCTCACCATCTTCGACGCCGCCACGCTTGCCGTGCTCGGTGACGC
TGCGCCGCCGCCACCACCGCCGGTGACCCTGCACAGGGATGCCTTCAAGTGCTCATCCTT
CGTCCCGTCCGGCGATGATCTCCTGTGCGTGATTCGGTACTTCAGGCGCAAGAACACAGA
ACAAGCAGGAGAATTGCTGGAGGATTGCCGTGCATTGGAGGTTCACCGGCTAGAGATTGC
GGGGGAGAAATCGCGGTGGGTTCAGATGAGGAGCATTGGAGACAGAATGCTGTTCGTTGG
TCTCTACCAGGGATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAATTGTGT
TTACTTCTTCAAGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGCATGGAGGA
TGGTCAAATCGAAGAGTTGCCTGGCCCCTCAATGCATGCTTGCACTTGGTTTGTGCCAAG
TTTGTCATAGCCCTCATTCGTGGACTTATAAGATAGTGCCTATTCCCGTCCGGCGATGAT
CTCCTGTGCGTGATTCGGTACTTCAGGAGCATTAGAGACAGAATGCTGTTCGTTGGTCTC
TACCAGGGATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAATTGTGTTTAC
TTCTTCAAGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGGATGGAGGATGGC
CAAATCGAAGAGTTGCCTGGCCCCTCGATGCATGCTTGCACTTGGTTTGTGCCAAGTTTG
TCATAGCCGGGCTATGATAGCCCTCGTTCGTATAGACTTATAAGGTAATCTTCAGATAGT
TTGGGTCAGGCGTTCCTCTTTTCGGTTTGAATGCATTGCTCCAAAATAATTCATGAAAAT
GCTGCTTTAAGACATGCAATTTTCTTGTGATATGTTAATCGAATGAAAT

consensusID : consensus_3029#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [AATTGCTGGAGGATTGCTGTGCATTGGAGGTTCACCGGCTAGAGATTGCGGGGGAGAAATCGCGGTGGGTTCAGATGAGGAGCATTAGAGACAGAATGCTGTTCGTTGGTCTCTACCAGGGATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAATTGTGTTTACTTCTTCAAGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGGATGGAGGATGGCCAAATCGAAGAGTTGCCTGGCCCCTCGATGCATGCTTGCACTTGGTTTGTGCCAAGTTTGTCATAGCCGGGCTATGATAGCCCTCGTTCGTATAGACTTATAAGGTAATCTTCAGATAGTTTGGGTCAGGCGTTCCTCTTTTCGGTTTGAATGCATTGCTCCAAAATAATTCATGNNNATGCTGCNNNAAGATATGCANNNNTCTTGTGATATGTTAATCGAATNNNNTGTTGGCTNNNNNNTTGCNNNNNNGCATCATAAANNNNNN]

[+] EMBL CF197288             [AATTGCTGGAGGATTGCTGTGCATTGGAGGTTCACCGGCTAGAGATTGCGGGGGAGAAATCGCGGTGGGTTCAGATGAGGAGCATTAGAGACAGAATGCTGTTCGTTGGTCTCTACCAGGGATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAATTGTGTTTACTTCTTCAAGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGGATGGAGGATGGCCAAATCGAAGAGTTGCCTGGCCCCTCGATGCATGCTTGCACTTGGTTTGTGCCAAGTTTGTCATAGCCGGGCTATGATAGCCCTCGTTCGTATAGACTTATAAGGTAATCTTCAGATAGTTTGGGTCAGGCGTTCCTCTTTTCGGTTTGAATGCATTGCTCCAAAATAATTCATGNNNATGCTGCNNNAAGATATGCANNNNTCTTGTGATATGTTAATCGAATNNNNTGTTGGCTNNNNNNTTGCNNNNNNGCATCATAAANNNNNN]




>consensus_3029#1
AATTGCTGGAGGATTGCTGTGCATTGGAGGTTCACCGGCTAGAGATTGCGGGGGAGAAAT
CGCGGTGGGTTCAGATGAGGAGCATTAGAGACAGAATGCTGTTCGTTGGTCTCTACCAGG
GATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAATTGTGTTTACTTCTTCA
AGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGGATGGAGGATGGCCAAATCG
AAGAGTTGCCTGGCCCCTCGATGCATGCTTGCACTTGGTTTGTGCCAAGTTTGTCATAGC
CGGGCTATGATAGCCCTCGTTCGTATAGACTTATAAGGTAATCTTCAGATAGTTTGGGTC
AGGCGTTCCTCTTTTCGGTTTGAATGCATTGCTCCAAAATAATTCATGNNNATGCTGCNN
NAAGATATGCANNNNTCTTGTGATATGTTAATCGAATNNNNTGTTGGCTNNNNNNTTGCN
NNNNNGCATCATAAANNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3029#0      CATTCAAGACGCGCTGCCGCCGTAGCCTCCGCCGCCGCGAATGGACTGGTCAGGCCTCCC 60
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      CGGCGACCTCCTCCGCCTCTTCTCCGGCCGCCTCCACGACCCACTCGACTTCCTCCGCTT 120
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      CCGCGCCGTCTGCCGCGCGTGGCGCGCCGCCACCGCCGCCGCAGCGGCCTCCCCTCCTCC 180
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      CTTCCTCCCATGGCTCCTTGCCCGCCCCGCCCCCATCAACCCCACCGCCGGCCCCGGCCC 240
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      CTCCCTCTCCTTCTACTCCCTCTCCTCCGCCGCCCTCCGCTCCGTCGCCGCCCCCTCCGC 300
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      CACCTGCTCCCTCCTCGGCCACACAAACTCCCACCTCCTCTTCTCCGACCACGGCCCCCT 360
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      CCTCCTCCTCGTCAACCCCCTCACCGGCGCCGACCTCCCCCTCCCGCCTTCCCCCTTCGA 420
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      CGCCTTCTCCCCCATCACCCAGGGCTACTACCTCCCCGGTCCCGACTCGCCGGTGGTGCT 480
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      CTACGACACCAGGAGGATCTTCTTCCACCACCCCGCCGGCGGCGGCGGCGGGTGGACGAC 540
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      GGTGCCGGTGGTGGACCTCGTCGCCGAGAACATGTACCACGCCGGGAAGGTGTTCGTCTG 600
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      CAACGACCGCGGCCACCTCACCATCTTCGACGCCGCCACGCTTGCCGTGCTCGGTGACGC 660
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      TGCGCCGCCGCCACCACCGCCGGTGACCCTGCACAGGGATGCCTTCAAGTGCTCATCCTT 720
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      CGTCCCGTCCGGCGATGATCTCCTGTGCGTGATTCGGTACTTCAGGCGCAAGAACACAGA 780
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      ACAAGCAGGAGAATTGCTGGAGGATTGCCGTGCATTGGAGGTTCACCGGCTAGAGATTGC 840
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      GGGGGAGAAATCGCGGTGGGTTCAGATGAGGAGCATTGGAGACAGAATGCTGTTCGTTGG 900
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      TCTCTACCAGGGATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAATTGTGT 960
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      TTACTTCTTCAAGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGCATGGAGGA 1020
consensus_3029#1      ------------------------------------------------------------
                                                                                  

consensus_3029#0      TGGTCAAATCGAAGAGTTGCCTGGCCCCTCAATGCATGCTTGCACTTGGTTTGTGCCAAG 1080
consensus_3029#1      ------------------------------------------------AATTGCTGGAGG 12
                                                                        ***    * *

consensus_3029#0      TTTGTCATAGCCCTCATTCGTGGACTTATAAGATAGTGCCTATTCCCGTCCGGCGATGAT 1140
consensus_3029#1      ATTGCTGTG-----CATTGGAGG-TTCACCGGCTAGAGATTG-------CGGGGGAGAAA 59
                       ***   *      **** * **  * *   * *** *  *        * ** **  * 

consensus_3029#0      CTCCTGTGCGTGATTCGGTACTTCAGGAGCATTAGAGACAGAATGCTGTTCGTTGGTCTC 1200
consensus_3029#1      TCGCGGTG---GGTTCAG---ATGAGGAGCATTAGAGACAGAATGCTGTTCGTTGGTCTC 113
                         * ***   * *** *    * ************************************

consensus_3029#0      TACCAGGGATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAATTGTGTTTAC 1260
consensus_3029#1      TACCAGGGATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAATTGTGTTTAC 173
                      ************************************************************

consensus_3029#0      TTCTTCAAGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGGATGGAGGATGGC 1320
consensus_3029#1      TTCTTCAAGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGGATGGAGGATGGC 233
                      ************************************************************

consensus_3029#0      CAAATCGAAGAGTTGCCTGGCCCCTCGATGCATGCTTGCACTTGGTTTGTGCCAAGTTTG 1380
consensus_3029#1      CAAATCGAAGAGTTGCCTGGCCCCTCGATGCATGCTTGCACTTGGTTTGTGCCAAGTTTG 293
                      ************************************************************

consensus_3029#0      TCATAGCCGGGCTATGATAGCCCTCGTTCGTATAGACTTATAAGGTAATCTTCAGATAGT 1440
consensus_3029#1      TCATAGCCGGGCTATGATAGCCCTCGTTCGTATAGACTTATAAGGTAATCTTCAGATAGT 353
                      ************************************************************

consensus_3029#0      TTGGGTCAGGCGTTCCTCTTTTCGGTTTGAATGCATTGCTCCAAAATAATTCATGAAAAT 1500
consensus_3029#1      TTGGGTCAGGCGTTCCTCTTTTCGGTTTGAATGCATTGCTCCAAAATAATTCATGNNNAT 413
                      *******************************************************   **

consensus_3029#0      GCTGCTTTAAGACATGCAATTTTCTTGTGATATGTTAATCGAATGAAAT----------- 1549
consensus_3029#1      GCTGCNNNAAGATATGCANNNNTCTTGTGATATGTTAATCGAATNNNNTGTTGGCTNNNN 473
                      *****   **** *****    **********************    *           

consensus_3029#0      ----------------------------
consensus_3029#1      NNTTGCNNNNNNGCATCATAAANNNNNN 501