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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1637 fasta sequence
[CACACACACCATAGCCAAAAAAAACACAATCACTCGACCAAACCACACCTAGCTACTACAAAGCTAGTGATCATAAGCTAACCTTAATTAGCTTTAATTAGCCAAGAAGAGACAAAGAGCAAGATCGATCATGTACCACCACCACCATGGCGGCCATGGCGAGGTGGCGAGCCTCCACCTCCTCTCGCCTCCAAACCCTCCCTTCTTCGGCGCCGCCGCGCACCACCACCACCACCACCACGGCCTCATCAACATGGCGCTGCCGCCTCAGGCCTACTTCGTCCCCGCCGCGCCGCCGCCGCCGTTCCAAGAAGCCACTGCTGCGCTCGCCGCCGGCGACGACGCCACCGCCGCGTTGGCGGTGTTTGAGCTGGAGCGCATCCTGGAAGAAGCGGCCGCCGCGGGCGGCGGCGGCGGCAATGGCTCACCGAGCTCGGGCTCCGACGGGTGCTGCTACGGCCTGCAGGGCGTGGCTCCGGCGGCGGAGGAGGAGCGGCGGCGGCGGCGGATGGTGTCGAACCGGGAGTCGGCGCGGCGGTCGCGGATGCGCAAGCAGCGGCAGCTCAGCGAGCTGTGGGCGCAGGTCGAGCACCTCCGCGGCGCCAACCGCCGCCTCCTCGACGAGCTCAACCACGCATTGAGGGGCTGCGCCGACGTCCGCCGCGAGAACTCCCGCCTCCGGGACGAGAAGGCCGAGCTCGCCGGCAAGCTCCAGCTGCTGCTCCCGCGGCAGCCGGCGCCGGAGAAGAACGCCGCCGACGACCAGAGTAGCTGCTCCTCGGAGCCATGCAAGAACAGCACTACGACTACCGCTGCTGAATGAATTATATTATTCATTATTATTATTATTATCCACCAAATTTTCACTTGAGAGGATAATAATATTAACAATAATATGTTTATCAATAAGAAAACGTGTATAACTAAACAAGGATAATTACTGGGGATGGAGGCATGCATGCATGCATGCGCCATGAGATCGATTTTTCTGTTTCGAGGAGGTTTTTGCTGTGTATTTTTACAACTAATTATATACTTATACCTGCGGTTAAATTAACATGGATCAATGGATCATATATATTATTTCTATTTACAAGTTGCAAAACTGCAGTTAATAGAACACTAGTAAGACAAAATGATGGGGTAGAAGAGGCATGTACAACTCTAAAAGTAGTAGACTACTTGTCAAAACGTTGTGCAACTATGAAGTTAAAAAAAATAGTGCCTTTCATGTAATGATGTCACGGGGTTCAACTAACTTGTAATGGATTATGCTTTGGGATTGCTAATGGATGGCATACTTTCTTGATGTTAAGTTACCCATAATAACCCAACTGCTGCTGCTCTGTTCTGTAGTTCATTAGCTATTTTACCTAGTTGTATCAAACAAGGTTCTGGATGTGTATCAAACAATTTTGGTACTCCTATATGAATGTTCCCATCAAGATCTGAACCACATATTCCTATTCATTGAGATGCTTATCGAATAGGATTCCAAAGAATCTTAAGGACGAGCCCGGCAACATGTGCCACGAAACAAATCTAGGCTTTTGTCAATACATAAACGTGAGTGTTCATCAAAACAAACGAGCAAATTCAAAAACATAGCATATATATATATATATAAGACAAAAAAA]
[+] EMBL AK107150 [CACACACACCATAGCCAAAAAAAACACAATCACTCGACCAAACCACACCTAGCTACTACAAAGCTAGTGATCATAAGCTAACCTTAATTAGCTTTAATTAGCCAAGAAGAGACAAAGAGCAAGATCGATCATGTACCACCACCACCATGGCGGCCATGGCGAGGTGGCGAGCCTCCACCTCCTCTCGCCTCCAAACCCTCCCTTCTTCGGCGCCGCCGCGCACCACCACCACCACCACCACGGCCTCATCAACATGGCGCTGCCGCCTCAGGCCTACTTCGTCCCCGCCGCGCCGCCGCCGCCGTTCCAAGAAGCCACTGCTGCGCTCGCCGCCGGCGACGACGCCACCGCCGCGTTGGCGGTGTTTGAGCTGGAGCGCATCCTGGAAGAAGCGGCCGCCGCGGGCGGCGGCGGCGGCAATGGCTCACCGAGCTCGGGCTCCGACGGGTGCTGCTACGGCCTGCAGGGCGTGGCTCCGGCGGCGGAGGAGGAGCGGCGGCGGCGGCGGATGGTGTCGAACCGGGAGTCGGCGCGGCGGTCGCGGATGCGCAAGCAGCGGCAGCTCAGCGAGCTGTGGGCGCAGGTCGAGCACCTCCGCGGCGCCAACCGCCGCCTCCTCGACGAGCTCAACCACGCATTGAGGGGCTGCGCCGACGTCCGCCGCGAGAACTCCCGCCTCCGGGACGAGAAGGCCGAGCTCGCCGGCAAGCTCCAGCTGCTGCTCCCGCGGCAGCCGGCGCCGGAGAAGAACGCCGCCGACGACCAGAGTAGCTGCTCCTCGGAGCCATGCAAGAACAGCACTACGACTACCGCTGCTGAATGAATTATATTATTCATTATTATTATTATTATCCACCAAATTTTCACTTGAGAGGATAATAATATTAACAATAATATGTTTATCAATAAGAAAACGTGTATAACTAAACAAGGATAATTACTGGGGATGGAGGCATGCATGCATGCATGCGCCATGAGATCGATTTTTCTGTTTCGAGGAGGTTTTTGCTGTGTATTTTTACAACTAATTATATACTTATACCTGCGGTTAAATTAACATGGATCAATGGATCATATATATTATTTCTATTTACAAGTTGCAAAACTGCAGTTAATAGAACACTAGTAAGACAAAATGATGGGGTAGAAGAGGCATGTACAACTCTAAAAGTAGTAGACTACTTGTCAAAACGTTGTGCAACTATGAAGTTAAAAAAAATAGTGCCTTTCATGTAATGATGTCACGGGGTTCAACTAACTTGTAATGGATTATGCTTTGGGATTGCTAATGGATGGCATACTTTCTTGATGTTAAGTTACCCATAATAACCCAACTGCTGCTGCTCTGTTCTGTAGTTCATTAGCTATTTTACCTAGTTGTATCAAACAAGGTTCTGGATGTGTATCAAACAATTTTGGTACTCCTATATGAATGTTCCCATCAAGATCTGAACCACATATTCCTATTCATTGAGATGCTTATCGAATAGGATTCCAAAGAATCTTAAGGACGAGCCCGGCAACATGTGCCACGAAACAAATCTAGGCTTTTGTCAATACATAAACGTGAGTGTTCATCAAAACAAACGAGCAAATTCAAAAACATAGCATATATATATATATATAAGACAAAAAAA]
consensusID : consensus_3033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence
[AGAGCAAATTCTTCAGTAAGCAGAATCAAAGCAGATTAACCCTCATCTACTTCTGGCCCTCTAAGAGTTCTCCACTAAGCAAGCGAAAACAGCCATGCTGCACCACCATTACCATGGCGAGGTGGCCAGCCTGCACTGCCTCTCACCTCCAAGCCTACCATTCAGTTCCCACTACCACAGCAACATGATCACCATGGCACCCTCGCCCTTCCACTTCCCAGCAGCTACCTGTGAACCTATCCAGGAATTGCTCCCTGTGGTAGCGGGCAATCGCCCAGCCGGCTCTGGCAGCACAGATGACGCCTACCAGATGGCAGCGGAGGAGGAGCGGAGGCGGCGGAGGATGATCTCCAACCGGGAGTCGGCACGGCGGTCGCGCATGCGCAAGCAGCGGCAGCTCAGCGAGCTGAGGGGGCAGGTTGTCCACCTCCGTGACGCCAACCGCCGCCTCCTTGATGAGCTCAACCAAGCAATGAGGGGCTGCAGTGATGTCCACTGCGAGAACGCCCGGCTCAGGAAGGAGAGGGCCGAGCTCCAGACCAAGCTCGAGCACCTCATGCAAGCACAGAAGAATAACACCTCGCCGAGCTCCTCACAGCCATGCGAGAATATTTGATTACTGAATAATAAATCATTCTTAATTATCTCCTCATTTTAACTACGAGGATTATTATTAGTATATCAAAATAAGACATGTTTTGAGATGCTTCCTTCGGCTTCTGTTTTTTTGTTTTATCTTTTATGTACGGGAATATTCTAACTGCCCATTATTGACATCTTTTTGTCAAGGTGGCTAAGATAAATATGGATTGAGCCTA]
[+] EMBL AK108319 [AGAGCAAATTCTTCAGTAAGCAGAATCAAAGCAGATTAACCCTCATCTACTTCTGGCCCTCTAAGAGTTCTCCACTAAGCAAGCGAAAACAGCCATGCTGCACCACCATTACCATGGCGAGGTGGCCAGCCTGCACTGCCTCTCACCTCCAAGCCTACCATTCAGTTCCCACTACCACAGCAACATGATCACCATGGCACCCTCGCCCTTCCACTTCCCAGCAGCTACCTGTGAACCTATCCAGGAATTGCTCCCTGTGGTAGCGGGCAATCGCCCAGCCGGCTCTGGCAGCACAGATGACGCCTACCAGATGGCAGCGGAGGAGGAGCGGAGGCGGCGGAGGATGATCTCCAACCGGGAGTCGGCACGGCGGTCGCGCATGCGCAAGCAGCGGCAGCTCAGCGAGCTGAGGGGGCAGGTTGTCCACCTCCGTGACGCCAACCGCCGCCTCCTTGATGAGCTCAACCAAGCAATGAGGGGCTGCAGTGATGTCCACTGCGAGAACGCCCGGCTCAGGAAGGAGAGGGCCGAGCTCCAGACCAAGCTCGAGCACCTCATGCAAGCACAGAAGAATAACACCTCGCCGAGCTCCTCACAGCCATGCGAGAATATTTGATTACTGAATAATAAATCATTCTTAATTATCTCCTCATTTTAACTACGAGGATTATTATTAGTATATCAAAATAAGACATGTTTTGAGATGCTTCCTTCGGCTTCTGTTTTTTTGTTTTATCTTTTATGTACGGGAATATTCTAACTGCCCATTATTGACATCTTTTTGTCAAGGTGGCTAAGATAAATATGGATTGAGCCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3033#0 CACACACACCATAGCCAAAAAAAACACAATCACTCGACCAAACCACACCTAGCTACTACA 60
consensus_3033#1 ------------------------------------------------------------
consensus_3033#0 AAGCTAGTGATCATAAGCTAACCTTAATTAGCTTTAATTAGCCAAGAAGAGACAAAGAGC 120
consensus_3033#1 ------------------------------------------------------------
consensus_3033#0 AAGATCGATCATGTACCACCACCACCATGGCGGCCATGGCGAGGTGGCGAGCCTCCACCT 180
consensus_3033#1 -----AGAGCAAATTCTTCAGTAAGCAGAA---TCAAAGCAGATTAACCCTCATCTACTT 52
** ** * * * * ** ** ** * * * ** ** *
consensus_3033#0 CCTCTCGCCTCCAAACCCTCCCTTCTTCG-GCG----CCGCCGCGCACCACCACCACCAC 235
consensus_3033#1 CTGGCCCTCTAAGAGTTCTCCACTAAGCAAGCGAAAACAGCCATGCTGCACCACCATTAC 112
* * ** * **** * * *** * *** ** ******** **
consensus_3033#0 CACCACGGCCTCATCAACATGGCGCTGCCGCCTCAGGCCTACTTCGTCCCCGCCGCGCCG 295
consensus_3033#1 CATGGCGAGGTGGCCAGCCTG-CACTGCC-TCTCAC-----CTCCAAGCCTACCATTCAG 165
** ** * ** * ** * ***** **** ** * ** ** * *
consensus_3033#0 CCGCCGCCGTTCCAAGAAGCCACTGCTGCGCTCGCCGCCGGCGACGACGCCACCGCCGCG 355
consensus_3033#1 TTCCCACTACCACAGCAA--------CATGATCACCAT-GGCACCCTCGCC-CTTCCAC- 214
** * ** ** * ** ** *** * **** * ** *
consensus_3033#0 TTGGCGGTGTTTGAGCTGGAGCGCATCCTGGAAGAAGCGGCCGCCGCGGGCGGCGGCGGC 415
consensus_3033#1 TTCCCAGCAGCTACCTGTGAACCTATCCAGGAA-------TTGCTCCCTGTGGTAGCG-- 265
** * * * ** * **** **** ** * * ** ***
consensus_3033#0 GGCAATGGCTCACCGAGCTCGGGCTCCGACGGGTGCTGCTACGGCCTGCAGGGCGTGGCT 475
consensus_3033#1 GGCAATCGCCCAGCCGGCTCTGGC-------AGCACAGATGACGCCTACCAGATG----- 313
****** ** ** * **** *** * * * * **** * * *
consensus_3033#0 CCGGCGGCGGAGGAGGAGCGGCGGCGGCGGCGGATGGTGTCGAACCGGGAGTCGGCGCGG 535
consensus_3033#1 ---GCAGCGGAGGAGGAGCGGAGGCGGCGGAGGATGATCTCCAACCGGGAGTCGGCACGG 370
** *************** ******** ***** * ** ************** ***
consensus_3033#0 CGGTCGCGGATGCGCAAGCAGCGGCAGCTCAGCGAGCTGTGGGCGCAGGTCGAGCACCTC 595
consensus_3033#1 CGGTCGCGCATGCGCAAGCAGCGGCAGCTCAGCGAGCTGAGGGGGCAGGTTGTCCACCTC 430
******** ****************************** *** ****** * ******
consensus_3033#0 CGCGGCGCCAACCGCCGCCTCCTCGACGAGCTCAACCACGCATTGAGGGGCTGCGCCGAC 655
consensus_3033#1 CGTGACGCCAACCGCCGCCTCCTTGATGAGCTCAACCAAGCAATGAGGGGCTGCAGTGAT 490
** * ****************** ** *********** *** *********** **
consensus_3033#0 GTCCGCCGCGAGAACTCCCGCCTCCGGGACGAGAAGGCCGAGCTCGCCGGCAAGCTCCAG 715
consensus_3033#1 GTCCACTGCGAGAACGCCCGGCTCAGGAAGGAGAGGGCCGAGCTCCAGACCAAGCTCGAG 550
**** * ******** **** *** ** * **** ********** ******* **
consensus_3033#0 CTGCTGCTCCCGCGGCAGCCGGCGCCGGAGAAGAACGCCGCCGACGACCAGAGTAGCTGC 775
consensus_3033#1 CACCTCAT---------GCAAGCACAGAAGAATAACACC-TCGCCGA-----------GC 589
* ** * ** ** * * **** *** ** ** *** **
consensus_3033#0 TCCTCGGAGCCATGCAAGAACAGCACTACGACTACCGCTGCTGAATGAATTATATTATTC 835
consensus_3033#1 TCCTCACAGCCATGCGAGAATA----TTTGATTAC------TGAATAA--TAAATCATTC 637
***** ******** **** * * ** *** ***** * ** ** ****
consensus_3033#0 ATTATTATTATTATTATCCACCAAATTTTCACTTGAGAGGATAATAATATTAACAATAAT 895
consensus_3033#1 TTAATTAT----------CTCCTCATTTTAACT-ACGAGGAT--TATTATTAGTA----- 679
* ***** * ** ***** *** ****** ** ***** *
consensus_3033#0 ATGTTTATCAATAAGAAAACGTGTATAACTAAACAAGGATAATTACTGGGGATGGAGGCA 955
consensus_3033#1 -----TATCAA-AATAAGACATGTTTTG--------AGATGCTTCCTTCGGCT------- 718
****** ** ** ** *** * *** ** ** ** *
consensus_3033#0 TGCATGCATGCATGCGCCATGAGATCGATTTTTCTGTTTCGAGGAGGTTTTTGCTGTGTA 1015
consensus_3033#1 --TCTGTTTTTTTGTTTTAT--------CTTTTATGTA-CGGGAATATTCTAACTGCCCA 767
** * ** ** **** *** ** * * ** * *** *
consensus_3033#0 TTTTTACAACTAATTATATACTTATACCTGCGGTTAA-ATTAACATGGATCAATGGATCA 1074
consensus_3033#1 TTATTGA-------CATCTTTTTGTCAAGGTGGCTAAGATAAATATGGATTGA--GCCTA 818
** ** ** * ** * * ** *** ** ** ****** * * *
consensus_3033#0 TATATATTATTTCTATTTACAAGTTGCAAAACTGCAGTTAATAGAACACTAGTAAGACAA 1134
consensus_3033#1 ------------------------------------------------------------
consensus_3033#0 AATGATGGGGTAGAAGAGGCATGTACAACTCTAAAAGTAGTAGACTACTTGTCAAAACGT 1194
consensus_3033#1 ------------------------------------------------------------
consensus_3033#0 TGTGCAACTATGAAGTTAAAAAAAATAGTGCCTTTCATGTAATGATGTCACGGGGTTCAA 1254
consensus_3033#1 ------------------------------------------------------------
consensus_3033#0 CTAACTTGTAATGGATTATGCTTTGGGATTGCTAATGGATGGCATACTTTCTTGATGTTA 1314
consensus_3033#1 ------------------------------------------------------------
consensus_3033#0 AGTTACCCATAATAACCCAACTGCTGCTGCTCTGTTCTGTAGTTCATTAGCTATTTTACC 1374
consensus_3033#1 ------------------------------------------------------------
consensus_3033#0 TAGTTGTATCAAACAAGGTTCTGGATGTGTATCAAACAATTTTGGTACTCCTATATGAAT 1434
consensus_3033#1 ------------------------------------------------------------
consensus_3033#0 GTTCCCATCAAGATCTGAACCACATATTCCTATTCATTGAGATGCTTATCGAATAGGATT 1494
consensus_3033#1 ------------------------------------------------------------
consensus_3033#0 CCAAAGAATCTTAAGGACGAGCCCGGCAACATGTGCCACGAAACAAATCTAGGCTTTTGT 1554
consensus_3033#1 ------------------------------------------------------------
consensus_3033#0 CAATACATAAACGTGAGTGTTCATCAAAACAAACGAGCAAATTCAAAAACATAGCATATA 1614
consensus_3033#1 ------------------------------------------------------------
consensus_3033#0 TATATATATATAAGACAAAAAAA 1637
consensus_3033#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||