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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1587 fasta sequence
[TAACAATGGAGGATGCCTGGCTCTCCTGCCTGACCGACTGCCACGTCGGGCCTGCCTTTGCGGGCCCACCTGGCAGTTTCCCGGGCCGATAAAACGTGGGCCCTGGGCCGGCGGACCCCCACCCGATCAGAGGGCGGCCTCGAAGTTGAGGCGCGAGGTGTAGGTGGCCGTGGGCTTCCAGTTCCTGGGGATGACGTCCCGGGCCGTGAGCGCCTTCTGGGCCGACAGCGTCGTCAACCTCACCGAGAAGGGCCCGACAAGCGGGCCCCGCACGAGGCACCACGTGGCCCCCCACACATGCTTCATGTCCAGCCACTCCACTGAGTTCGCCTGCACCCCGCCATGTGAAAGGCAGCACAAACAGATTAGAAACAGATCAACAATGAGCAACTAGGATACCCGATACCCTTCAGGAAAAGAAAAAGGAATAAGCATTAAGTAAGTAGCAGTAACCTTACTACATTCAGAATAGATTATCACAGAAACGTACAGTTTCAGGTTAAGCAGAGCAGCCTGAAACCTTTACAGCAAAGCAAGCCATAGCGCTCAACGCTGGCATGCATCGTCGTCTGGGATTCCGAATCTTTGGATGCCACTAGGCTACCAAGCCCACAACACAGAGTCTTCATCACAAGCGTGCCTCAGTTTGCAGGGTGGGGGTGTCAGGGTTTAACAACCGTGAAAAGCATTAGCAAGTGCAAAAGCAAGGGCACCATGCAGTGTGGCTGGTAAAAACTGTCGACGGAGACCAACGCAAGTGCATCAGTGCATGCTCTATCTTCTTTGCTGTTGTTAAGGAGAGGGGGAGACCGAGCTAAAGCGGCAAAATCATTGACGGCTCTTTGGTGAAAGGATGGCTAGGGTTCATGTGCTTTGCCATTGCATTGGGGTTGTAGACTGAATGAGTTGCTGCTCTACAGATCTAGTGCACAAAGCCGGAATTTTTTTTTATGCACACATTCCAGATAGGAATCATTTGACAAAGAGAATCATGCTTTTATGCAAAGGTTTGACTATGTCTGGAGTCTGGTAGCTAAGCGAGGAAGTGAAAGAAAGCAGGATGCTTTCTTGACCATGTGTGCCGTACTTACTATCCTGTCTCGCAAGTGCTCCCTTCTTTTGTGTAAACTTGTATTGGAACAAAGGACTAAATCCTGACAAGGCATCTGAGGCATTAATTAGTTGGAAACCGTTGGTTTCACTTCTCCTAAGATGCTGGTTTTGGTTAGGAATATGTGATCCTGTAACTTGTGGAAAATGTGATTCTAGAACTTCAGGTTGATCTAGAAAGGACAGCAGAGAGACCCAAGTATCCAACAGTATTATGCTAGTCATTCAGTGAACACTGAACAGAGGCCTGAAGGGTAAAAGCAGCAAGGAATTAGGCAGTACACATGTCTCCAACCACATCGGCCCACTAGAGCAAAGAGGGTGAGGAACTTGTCACATGCTGCACACATGTTTGCAAAGGGAAGAAGCTGTGGTCCAATTGCATCCAGCAATGGATTTGTCCCAGGCAGCACTGAGCATGTTTCCCAGCACTATGGGCAATTAAAAGCAAAAGATGACCCCATTTTCCATTTCTAC]
[+] EMBL AK109871 [TAACAATGGAGGATGCCTGGCTCTCCTGCCTGACCGACTGCCACGTCGGGCCTGCCTTTGCGGGCCCACCTGGCAGTTTCCCGGGCCGATAAAACGTGGGCCCTGGGCCGGCGGACCCCCACCCGATCAGAGGGCGGCCTCGAAGTTGAGGCGCGAGGTGTAGGTGGCCGTGGGCTTCCAGTTCCTGGGGATGACGTCCCGGGCCGTGAGCGCCTTCTGGGCCGACAGCGTCGTCAACCTCACCGAGAAGGGCCCGACAAGCGGGCCCCGCACGAGGCACCACGTGGCCCCCCACACATGCTTCATGTCCAGCCACTCCACTGAGTTCGCCTGCACCCCGCCATGTGAAAGGCAGCACAAACAGATTAGAAACAGATCAACAATGAGCAACTAGGATACCCGATACCCTTCAGGAAAAGAAAAAGGAATAAGCATTAAGTAAGTAGCAGTAACCTTACTACATTCAGAATAGATTATCACAGAAACGTACAGTTTCAGGTTAAGCAGAGCAGCCTGAAACCTTTACAGCAAAGCAAGCCATAGCGCTCAACGCTGGCATGCATCGTCGTCTGGGATTCCGAATCTTTGGATGCCACTAGGCTACCAAGCCCACAACACAGAGTCTTCATCACAAGCGTGCCTCAGTTTGCAGGGTGGGGGTGTCAGGGTTTAACAACCGTGAAAAGCATTAGCAAGTGCAAAAGCAAGGGCACCATGCAGTGTGGCTGGTAAAAACTGTCGACGGAGACCAACGCAAGTGCATCAGTGCATGCTCTATCTTCTTTGCTGTTGTTAAGGAGAGGGGGAGACCGAGCTAAAGCGGCAAAATCATTGACGGCTCTTTGGTGAAAGGATGGCTAGGGTTCATGTGCTTTGCCATTGCATTGGGGTTGTAGACTGAATGAGTTGCTGCTCTACAGATCTAGTGCACAAAGCCGGAATTTTTTTTTATGCACACATTCCAGATAGGAATCATTTGACAAAGAGAATCATGCTTTTATGCAAAGGTTTGACTATGTCTGGAGTCTGGTAGCTAAGCGAGGAAGTGAAAGAAAGCAGGATGCTTTCTTGACCATGTGTGCCGTACTTACTATCCTGTCTCGCAAGTGCTCCCTTCTTTTGTGTAAACTTGTATTGGAACAAAGGACTAAATCCTGACAAGGCATCTGAGGCATTAATTAGTTGGAAACCGTTGGTTTCACTTCTCCTAAGATGCTGGTTTTGGTTAGGAATATGTGATCCTGTAACTTGTGGAAAATGTGATTCTAGAACTTCAGGTTGATCTAGAAAGGACAGCAGAGAGACCCAAGTATCCAACAGTATTATGCTAGTCATTCAGTGAACACTGAACAGAGGCCTGAAGGGTAAAAGCAGCAAGGAATTAGGCAGTACACATGTCTCCAACCACATCGGCCCACTAGAGCAAAGAGGGTGAGGAACTTGTCACATGCTGCACACATGTTTGCAAAGGGAAGAAGCTGTGGTCCAATTGCATCCAGCAATGGATTTGTCCCAGGCAGCACTGAGCATGTTTCCCAGCACTATGGGCAATTAAAAGCAAAAGATGACCCCATTTTCCATTTCTAC]
consensusID : consensus_3036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1395 fasta sequence
[AACATCTCAATTCTCAGCCGGATCAAGAACACACGGCATAAAAGGTGGCATTGACTCACGAACCCTGCGACTGCGTTTCGACCAGGGCAAACACACACGAACAGCGCGCGCGCGCGCGCGCGCGCGCACACACACACACACACACACACACAAAACAGGAGCACAGGAGTGTCAAGGCAGGAGAGACCAAGAGAGATCCAAAACCCTCGGACCTACTTCTCCCCAGCTTCAGCCCTCCTACAGGTAAATCCTTGAAGCAAACCAAGCAGCAAAACGCTCTCTTCTCCTTCGGAGAGGGCGGCTACCTGTTGCGCATGGGCCATCTCCCTGATTCCTGAACAAACTACTCACACTGACACACACTCACCAAAACAGCTAAATTAGCTACACTTACCATGAATAGAATCATGAATGATCAGACCAACTAATATGATGAGCTGCATAACAATGGAGGATGCCTGGCTCTCCTGCCTGACCGACTGCCACGTCGGGCCTGCCTTTGCGGGCCCACCTGGCAGTTTCCCGGGCCGATAAAACGTGGGCCCTGGGCCGGCGGACCCCCACCCGATCAGAGGGCGGCCTCGAAGTTGAGGCGCGAGGTGTAGGTGGCCGTGGGCTTCCAGTTCCTGGGGATGACGTCCCGGGCCGTGAGCGCCTTCTGGGCCGACAGCGTCGTCAACCTCACCGAGAAGGGCCCGACAAGCGGGCCCCGCACGAGGCACCACGTGGCCCCCCACACATGCTTCATGTCCAGCCACTCCACTGAGTTCGCCTGCTTTATCTGCATGGATCCAATGTCGCCCTGGCCGTCCTCGAACTCGACCAGCAGTGACAGCCAGAAGTTCGTCGAGCCCTCGTTTACACGGAAGGCTATGTTCTTCCCGCCGTACTTGCACGCAGTCCTGGTATATTTGAACACTTCTGTAGACGACCGACAGCTGGCCTCGGTCTCGCAGGTGGCCGCCGGCGCCGGCGACCGCCATCCTGCTGAATGCGGCGCCGCTGAGGTCGAAGAGCGTGCGGCCGAAGGCGCACAGCCCGCCGGGGCACTCGTCGGTGACGATGACCGTGACGGCGCGGCGGGAGCAGATGCCGTGGTCGAGGCACTTCACCTTGTAGCAGGCGCCGCAGCCCTCGCCGTCCTTGAACAGCACCGGGCTCACCGACCCCACCCGCGCCTTCATCGGCACCACGTCCACCAGCGATCCATACCCACACGCCCCGCCTGAAAAATATGACAAGAAAAACGTTTTGCTTTGGTTGAACCCAACAAAGAAATTATCGCCAATGGCAATGCCAAATTGCACTATACTAGATTGTAGCGTGCAAGAACTGGACGGACGCCAACTGTTTGGCCGTAATCAGTGATCACAGAGTCAAGCATGTGGTTACAGA]
[-] EMBL AK107184 [AACATCTCAATTCTCAGCCGGATCAAGAACACACGGCATAAAAGGTGGCATTGACTCACGAACCCTGCGACTGCGTTTCGACCAGGGCAAACACACACGAACAGCGCGCGCGCGCGCGCGCGCGCGCACACACACACACACACACACACACAAAACAGGAGCACAGGAGTGTCAAGGCAGGAGAGACCAAGAGAGATCCAAAACCCTCGGACCTACTTCTCCCCAGCTTCAGCCCTCCTACAGGTAAATCCTTGAAGCAAACCAAGCAGCAAAACGCTCTCTTCTCCTTCGGAGAGGGCGGCTACCTGTTGCGCATGGGCCATCTCCCTGATTCCTGAACAAACTACTCACACTGACACACACTCACCAAAACAGCTAAATTAGCTACACTTACCATGAATAGAATCATGAATGATCAGACCAACTAATATGATGAGCTGCATAACAATGGAGGATGCCTGGCTCTCCTGCCTGACCGACTGCCACGTCGGGCCTGCCTTTGCGGGCCCACCTGGCAGTTTCCCGGGCCGATAAAACGTGGGCCCTGGGCCGGCGGACCCCCACCCGATCAGAGGGCGGCCTCGAAGTTGAGGCGCGAGGTGTAGGTGGCCGTGGGCTTCCAGTTCCTGGGGATGACGTCCCGGGCCGTGAGCGCCTTCTGGGCCGACAGCGTCGTCAACCTCACCGAGAAGGGCCCGACAAGCGGGCCCCGCACGAGGCACCACGTGGCCCCCCACACATGCTTCATGTCCAGCCACTCCACTGAGTTCGCCTGCTTTATCTGCATGGATCCAATGTCGCCCTGGCCGTCCTCGAACTCGACCAGCAGTGACAGCCAGAAGTTCGTCGAGCCCTCGTTTACACGGAAGGCTATGTTCTTCCCGCCGTACTTGCACGCAGTCCTGGTATATTTGAACACTTCTGTAGACGACCGACAGCTGGCCTCGGTCTCGCAGGTGGCCGCCGGCGCCGGCGACCGCCATCCTGCTGAATGCGGCGCCGCTGAGGTCGAAGAGCGTGCGGCCGAAGGCGCACAGCCCGCCGGGGCACTCGTCGGTGACGATGACCGTGACGGCGCGGCGGGAGCAGATGCCGTGGTCGAGGCACTTCACCTTGTAGCAGGCGCCGCAGCCCTCGCCGTCCTTGAACAGCACCGGGCTCACCGACCCCACCCGCGCCTTCATCGGCACCACGTCCACCAGCGATCCATACCCACACGCCCCGCCTGAAAAATATGACAAGAAAAACGTTTTGCTTTGGTTGAACCCAACAAAGAAATTATCGCCAATGGCAATGCCAAATTGCACTATACTAGATTGTAGCGTGCAAGAACTGGACGGACGCCAACTGTTTGGCCGTAATCAGTGATCACAGAGTCAAGCATGTGGTTACAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3036#0 TAACAATGGAGGATGCCTGGCTCTCCTGCCTGACCGACTGC-CACGTCG----GGCCTGC 55
consensus_3036#1 -----------AACATCTCAATTCTCAGCCGGATCAAGAACACACGGCATAAAAGGTGGC 49
* ** * * *** ** * * * **** * * **
consensus_3036#0 CTTTGCGGGCCCACCTGGCAGTT---TCCCGGGCCGATAAAACGTGGGCCCTGGGCCGGC 112
consensus_3036#1 ATTGACTCACGAACCCTGCGACTGCGTTTCGACCAGGGCAAACACACACGAACAGCGCGC 109
** * * *** ** * * ** * * **** * ** **
consensus_3036#0 GGACCCCCACCCGATCAGAGGGCGGCCTCGAAGTTGAGGCGCGAGGTGTAGGTGGCCGTG 172
consensus_3036#1 GCGCGCGCGCGCGCGCGCACACACACACACACACACACACACAAAA--CAGGAGCACAGG 167
* * * * * ** * * * * * * * * *** * * *
consensus_3036#0 GGCTTCCAGTTCCTGGGGAT-----GACGTCCCGGGCCGTGAGCGCCTTCTGGGCCGACA 227
consensus_3036#1 AGTGTCAAGGCAGGAGAGACCAAGAGAGATCCAAAACCCTCGG-ACCTACTTCTCCC-CA 225
* ** ** * ** ** *** ** * * *** ** ** **
consensus_3036#0 GCGTCGTCAACCTCACCGAGAAGGGCCCGACAAGCGGGCCCCGCA-CGAGGCACCACGTG 286
consensus_3036#1 GCTTCAGCCCTCCTACAGGTAAATCCTTGA--AGCAAACCAAGCAGCAAAACGCTCTCTT 283
** ** * * ** * ** * ** *** ** *** * * * * *
consensus_3036#0 GCCCCCCACACATGCTTCATGTCCAGCCACTCCACTGAGTTCGCCTGCACCCCGCCATGT 346
consensus_3036#1 CTCCTTCGGAGAGG----GCGGCTACCTGTTGCGCATGGGCCATCT---CCCTGATTCCT 336
** * * * * * * * * * * * * * ** *** * *
consensus_3036#0 GAAAGGCAGCACAAACAGATTAGAAACAGATCAACAATGAGCAACTAGGATACCCGATAC 406
consensus_3036#1 GAA---CAAACTACTCACACT-GACACACACTCACCA-AAACAGCTAAATTAGCT-ACAC 390
*** ** * ** * * ** *** * ** * * ** *** ** * * **
consensus_3036#0 CCTTCAGGAAAAGAAAAAGGAATAAGCATTAAGTAAGTAGCAGTAACCTTACTACATTCA 466
consensus_3036#1 TTACCATGAATAGAATCATGAATGATCA--GACCAACTAATATGA--TGAGCTGCATA-A 445
** *** **** * **** * ** * ** ** * * ** *** *
consensus_3036#0 GAATAGATTATCACAGAAACGTACAGTTTCAGGTTAAGCAGAGCAGCCTGAAACCTTTAC 526
consensus_3036#1 CAATGGAGGATGCCTGGCTCTCCTGCCTGACCGACTGCCACGTCGGGCCTG--CCTTTGC 503
*** ** ** * * * * * ** * * * ***** *
consensus_3036#0 AGCAAAGCAAGCCATAGCGCTCAACGCTGGCATGCATCGTCGTCTGGGATTCCGAATCTT 586
consensus_3036#1 GG--GCCCACCTGGCAGTTTCCCGGGCCGATAAAACGTGGGCCCTGGGCCGGCGGACCCC 561
* ** ** * ** * * * ***** ** * *
consensus_3036#0 TGGATG-CCACTAGGCTACC--AAGCCCACAACACAGAGTCTTCATCACAAGCGTGCCTC 643
consensus_3036#1 CACCCGATCAGAGGGCGGCCTCGAAGTTGAGGCGCGAGGTGTAGGTGGCCGTGGGCTTCC 621
* ** *** ** * * * ** * * * * *
consensus_3036#0 AGTTTGCAGGGTGGGGGTGTCAGGGTTTAACAACC------GTGAAAAGCATTAGCAAGT 697
consensus_3036#1 AGTTCCTGGGGATGACGTCCCGGGCCGTGAGCGCCTTCTGGGCCGACAGCGTCGTCAACC 681
**** *** * ** * ** * * ** * * *** * ***
consensus_3036#0 GCAAAAGCAAGGGCACCATGCAGTGTGGCTGGTAAAAACTGTCGACGGAGACCAACGCAA 757
consensus_3036#1 TCACCGAGAAGGGCCCGACA-AGCGGGCCCCGCACGAGGCACC-ACGTGGCCCCCCACAC 739
** ****** * * ** * * * * * * * *** * ** * **
consensus_3036#0 GTGCATCAGTGCATGCTCTATCTTCTTTGCTGTTGTTAAGGAGAGGGGGAGACCGAGCTA 817
consensus_3036#1 ATGCTTCA-TGTCCAGCCACTCCACTGAGTTCGCCTGCTTTATCTGCATGGATC---CAA 795
*** *** ** * ** ** * * * * * ** * * *
consensus_3036#0 AAGCGGCAAAATCATTGACGGCTCTTTGGTGAAAGGATGGCTAGG-GTTCATGTGCTTTG 876
consensus_3036#1 TGTCGCCCTGGCCGTCCTCGAACTCGACCAGCAGTGACAGCCAGAAGTTCGTCGAGCCCT 855
** * * * ** * * ** ** ** **** *
consensus_3036#0 CCATTGCATTGG-GGTTGTAGACTGAATGAGTTGCTGCTCTACAGATCTAGTGCACAAAG 935
consensus_3036#1 CGTTTACACGGAAGGCTATGTTCTTCCCGCCGTACTTGCACGCAGTCCTGGTATAT---- 911
* ** ** * ** * * ** * * ** *** ** ** *
consensus_3036#0 CCGGAATTTTTTTTTATGCACACATTCCAGATAGGAATCATTTGACAAAGAGAATCATGC 995
consensus_3036#1 -TTGAACACTTCTGTAGACGACCGA--CAGCTGGCCTCGGTCTCGCAGGTGGCCGCCGGC 968
*** ** * ** * * *** * * * * ** * * **
consensus_3036#0 TTTTATG-CAAAGGTTTGACTATGTCTGGAGTCTGGTAGCTAAGCGAGGAAGTGAAAGAA 1054
consensus_3036#1 GCCGGCGACCGCCATCCTGCTGAATGCGGCGCCGCTGAGGTCGAAGAGCGTGCGGCCGAA 1028
* * * ** * ** * * ** * *** * * ***
consensus_3036#0 AGCAGGATGCTTTCTTGACCATGTGT--GCCGTACTTACTATCCTGTCTCG-CAAGTGCT 1111
consensus_3036#1 GGCGCACAGCCCGCCGGGGCACTCGTCGGTGACGATGACCGTGACGGCGCGGCGGGAGCA 1088
** ** * * ** ** * * ** * * * ** * * **
consensus_3036#0 CCCTTCTT--TTGTGTAAACTTGTATTGGAACAAAGGACTAAATCCTGACAAGGCATCTG 1169
consensus_3036#1 GATGCCGTGGTCGAGGCACTTCACCTTGTAGCAGGCGCCGCAGCCCTCGCCGTCCTTGAA 1148
* * * * * * * *** * ** * * * *** * * *
consensus_3036#0 AGGCATTAATTAGTTGGAAACCGTTGGTTTCACTTCTCCTAAGATGCTGGTTTTGGTTAG 1229
consensus_3036#1 CAGCACCGGGCTCACCGACCCCACC-----CGCGCCTTCATCGGCACCA-CGTCCACCAG 1202
*** ** ** * * ** * * * * **
consensus_3036#0 GAATATGTGATCCTGTAACTTG--TGGAAAATGTGATTCTAGAACTTCAGGTTGATCTAG 1287
consensus_3036#1 CGATCCATACCCACACGCCCCGCCTGAAAAATATGA--CAAGAAAAACGTTTTGCTTTGG 1260
** * * * * ** ***** *** * **** * *** * * *
consensus_3036#0 A-AAGGACAGCAGAGAGACCCAAGTATCCAACAGTATTATGCTA-GTCATTC-AGTGAAC 1344
consensus_3036#1 TTGAACCCAACAAAGAAATTATCGCCAATGGCAATGCCAAATTGCACTATACTAGATTGT 1320
* ** ** *** * * ** * * * ** * **
consensus_3036#0 ACTGAACAGAGGCCTGAAGGGTAAAAGCAGCAAGGAATTAGGCAGTACACATGTCTCCAA 1404
consensus_3036#1 AGCGTGCAAGAACTGGACGGACGCCAACTGTTTGGCCGTAATCAGTGATCACAGAGTCAA 1380
* * ** * ** ** * * * ** ** **** ** ***
consensus_3036#0 CCACATCGGCCCACTAGAGCAAAGAGGGTGAGGAACTTGTCACATGCTGCACACATGTTT 1464
consensus_3036#1 GCATGTGGTTACAGA--------------------------------------------- 1395
** * * **
consensus_3036#0 GCAAAGGGAAGAAGCTGTGGTCCAATTGCATCCAGCAATGGATTTGTCCCAGGCAGCACT 1524
consensus_3036#1 ------------------------------------------------------------
consensus_3036#0 GAGCATGTTTCCCAGCACTATGGGCAATTAAAAGCAAAAGATGACCCCATTTTCCATTTC 1584
consensus_3036#1 ------------------------------------------------------------
consensus_3036#0 TAC 1587
consensus_3036#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||