These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1573 fasta sequence [GGTGCAGAGGGCCAGAGGCTAGCAACGCGAGGCGGGAAAGTGGAGGGCGGCCGGCGGCGCGACGGTGGCCGGTGCCCGACGGCGGCTGCTATAGCGGGAAACACGGCGACGCGGCGGCCCCAACGGTGATGTCATCGACTGCGTGCCGACGCACCTGCAGCCATCCGGTTCGGGATGAAGCAGCCACGCGCCGCCGACATCGTCCGCCCCGACTCCACCAACGATGGCTGCAACTCCTGCTCGCGCATGCCGAGGCGGCCTCTGTGCTGGCGCTCCTCCTGCGCGCGTTCGGCTGCCCTTGGCGAGCGGCGCACACCTTGGCCTCAGCCTCTGCTTCGCGGGGGCCGCGCCGTAGGCCGTGGACGTGCCGCGGCTGGTGCTCCACTTCGACAGCGCTGGGTCATGGAGTAGCAGAGCTCGAGCACGGGGCAGTGCTACAGAGCTCGGGGATTACGTCGTAGTTGAACCCGAACCCGAGATCCACGCACCCCTTCAGCTCCTCTAGGTCGTCGTTGACTCGTCGGTCAAGCTCGGCGCGTGCCGCCGCCGCCGTCACCCCCGCTCCTCGCCGTACACGCGCCGCCGCCGAAGACGACGACGCCGCAGGGCTCCTCCTTGGCGACCACCACCGGCTTCGTCCCCCGTGGTCACGCCGCCTCCCGCTGTACACCGCACCACACGTCTTCGGCCTCGACCTCGGCCGCCGCTTCCGCTCCGCTCGTGGCCTGCTACCGTCGTCGCCCCGCTACTCCGCCCGCCCTTCCGCGTTCCAACACGGCGAGCCATGCCCGGCGGCGAGAGGACCATCGCCGCGGCCGTGCAAATCCGGCAGCTGAGCGGCGGGATCCATACGGCAGCGGCGGAGGAGGAGGAGACCGGGAGATTGGCCGCCGCACGCTGCTCCTCTCCCGCGAGCCGCCGCGCGCCGCTCCTCTTCCACAGGCCGTCGCGCGCCGCTGCCTCCTCGTCGGTGAAGACTCGGAGGAAATAGAGGTAGAGAGGGGAGAGGTGGACGCCGCCCCGCTGCACACCGCCGCCTTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGCCGCGGTCGTTTCCCCATCCGCCATGCCGCGCCGCTTCCCCATCCGCCACCCCACTGCGCGTCGCCGCCCCTTCGCTGGCCGTTGCCTGTCTCCTCCCCATGCCTTCGATGCCGCCCAACTCCAAGGCTTCCCCCACCGGCCGTGCGAGGAGCTCGGCCGGGCTGCTGCCGCCGTCGGCCGCCGTCGTGGCGCCGCCCTCCTCTCCCGCCTCACCCCGCCAACCGGCCTACAGGCACAGAGAGAGAGAGAAAGAGGAGTAACTGAGGAAGAGAAGAGAGGGAGAGTGACTTAGCCTGACATGTGGGGCCCACGTGGGGTCCCATGCTGACTCAGCCGCCACGTAGGATAAAACCGGGGTTAAAACCACTTAAGGTTCTATTGTGACCGGTTTTGATTAATTAAGGGATGCCGGATATCTGGTTTGCGGTTTGGGGACAATTTTGTAACTCGATGACAAGTTGAGGGACCTTCGGTGTACTTTTTCTAAACTTAATAAGGTTTA] [+] EMBL AK109750 [GGTGCAGAGGGCCAGAGGCTAGCAACGCGAGGCGGGAAAGTGGAGGGCGGCCGGCGGCGCGACGGTGGCCGGTGCCCGACGGCGGCTGCTATAGCGGGAAACACGGCGACGCGGCGGCCCCAACGGTGATGTCATCGACTGCGTGCCGACGCACCTGCAGCCATCCGGTTCGGGATGAAGCAGCCACGCGCCGCCGACATCGTCCGCCCCGACTCCACCAACGATGGCTGCAACTCCTGCTCGCGCATGCCGAGGCGGCCTCTGTGCTGGCGCTCCTCCTGCGCGCGTTCGGCTGCCCTTGGCGAGCGGCGCACACCTTGGCCTCAGCCTCTGCTTCGCGGGGGCCGCGCCGTAGGCCGTGGACGTGCCGCGGCTGGTGCTCCACTTCGACAGCGCTGGGTCATGGAGTAGCAGAGCTCGAGCACGGGGCAGTGCTACAGAGCTCGGGGATTACGTCGTAGTTGAACCCGAACCCGAGATCCACGCACCCCTTCAGCTCCTCTAGGTCGTCGTTGACTCGTCGGTCAAGCTCGGCGCGTGCCGCCGCCGCCGTCACCCCCGCTCCTCGCCGTACACGCGCCGCCGCCGAAGACGACGACGCCGCAGGGCTCCTCCTTGGCGACCACCACCGGCTTCGTCCCCCGTGGTCACGCCGCCTCCCGCTGTACACCGCACCACACGTCTTCGGCCTCGACCTCGGCCGCCGCTTCCGCTCCGCTCGTGGCCTGCTACCGTCGTCGCCCCGCTACTCCGCCCGCCCTTCCGCGTTCCAACACGGCGAGCCATGCCCGGCGGCGAGAGGACCATCGCCGCGGCCGTGCAAATCCGGCAGCTGAGCGGCGGGATCCATACGGCAGCGGCGGAGGAGGAGGAGACCGGGAGATTGGCCGCCGCACGCTGCTCCTCTCCCGCGAGCCGCCGCGCGCCGCTCCTCTTCCACAGGCCGTCGCGCGCCGCTGCCTCCTCGTCGGTGAAGACTCGGAGGAAATAGAGGTAGAGAGGGGAGAGGTGGACGCCGCCCCGCTGCACACCGCCGCCTTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGCCGCGGTCGTTTCCCCATCCGCCATGCCGCGCCGCTTCCCCATCCGCCACCCCACTGCGCGTCGCCGCCCCTTCGCTGGCCGTTGCCTGTCTCCTCCCCATGCCTTCGATGCCGCCCAACTCCAAGGCTTCCCCCACCGGCCGTGCGAGGAGCTCGGCCGGGCTGCTGCCGCCGTCGGCCGCCGTCGTGGCGCCGCCCTCCTCTCCCGCCTCACCCCGCCAACCGGCCTACAGGCACAGAGAGAGAGAGAAAGAGGAGTAACTGAGGAAGAGAAGAGAGGGAGAGTGACTTAGCCTGACATGTGGGGCCCACGTGGGGTCCCATGCTGACTCAGCCGCCACGTAGGATAAAACCGGGGTTAAAACCACTTAAGGTTCTATTGTGACCGGTTTTGATTAATTAAGGGATGCCGGATATCTGGTTTGCGGTTTGGGGACAATTTTGTAACTCGATGACAAGTTGAGGGACCTTCGGTGTACTTTTTCTAAACTTAATAAGGTTTA] consensusID : consensus_304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1065 fasta sequence [CAAAACCAGATATCCCACGTCCCTTAATTAATCAAAACCAGTCACAAGAGGTCCCTCTTAATCCCGGTTTGGTCCTACGTGGCTGCCGAGTCCAGCGTGGGACCCATGTGGGGCCCACGTGTCATGGTAATCCACGTCATCACCCTTCCTTTTTCTCCTCTTCTCTCTTTCAGGGAGAGGCAAAGCGGCGGCCGGCGGGTGCAGGGCCAGAGGCCAGCAGGAGAGAGGAGGGCGACGGCGGCCGGCGCCCAGCGGCGGCAGCTGGCGGGAAACACGGCGACGCGGCGGCCCCGACGGCGATGTCATCGACTGCGTGCCGACGCACCTGCAGCCATCCGGTTCGGGATGAAGCAGCCACGCGTCGCCGGCGTCGTCCGCCGCGACTCCACCAATGACGACCGCGACTCCACCTGCTCGTGCATGCCGAGGCGGCCTCTGTGCCGACGCTTCTCCTGTGCGTGTTCGGCTGCCCCTGGCGAGCGACGTTAGACTCTGCTTCGCGGCGGCCGCGCCGGAGGCCGTGGACGTGCCGCGGCTGGTGCTCCACTTCGACAGCGCTGGGTCATGGAGTAGCAGAGCTTGAGCACGGGGGCAGTGCCGCAGAACTCAGGGATTACGTCGCAGCTGAACCCGAACCTGAGATCCACGCACCCCTTCAGCTCCTCCAGGTCGTCGTCGACTCGTCGGTCAGGCTCCGCGCGTGCCGCCGCCGCCGCCACCGCTCCCGCTCCTCGCCGTACATGCGCCGCCGCCGAAGACGACGACGCCGCAGGGCTTCTCCTTGGCGACCACCACCGGCTTCGTCCGCCGTGGCCACGCCGCCTCCAACTGTACCCCGCACCACACGTCCTCGGCCTCGACCTAGGCCACCGCTGCCGCTCCGCCCGTGGCCTGCTGCCGTCGCCGCCGCGGTGCTCCGCCCGCCCTTTCGTGGCTCCAACACATCCCGTCTCTCCCGCCTCCCCTTCTCGAGCTCCATAGTCCCCACAGATCTCAGCGGCGAGCTGTGCCCGGCGGCGAGAGGACCATCGCCGCGGCCGTGCAAATCCGGCAGCTGAGCGGCGT] [-] EMBL AK120678 [CAAAACCAGATATCCCACGTCCCTTAATTAATCAAAACCAGTCACAAGAGGTCCCTCTTAATCCCGGTTTGGTCCTACGTGGCTGCCGAGTCCAGCGTGGGACCCATGTGGGGCCCACGTGTCATGGTAATCCACGTCATCACCCTTCCTTTTTCTCCTCTTCTCTCTTTCAGGGAGAGGCAAAGCGGCGGCCGGCGGGTGCAGGGCCAGAGGCCAGCAGGAGAGAGGAGGGCGACGGCGGCCGGCGCCCAGCGGCGGCAGCTGGCGGGAAACACGGCGACGCGGCGGCCCCGACGGCGATGTCATCGACTGCGTGCCGACGCACCTGCAGCCATCCGGTTCGGGATGAAGCAGCCACGCGTCGCCGGCGTCGTCCGCCGCGACTCCACCAATGACGACCGCGACTCCACCTGCTCGTGCATGCCGAGGCGGCCTCTGTGCCGACGCTTCTCCTGTGCGTGTTCGGCTGCCCCTGGCGAGCGACGTTAGACTCTGCTTCGCGGCGGCCGCGCCGGAGGCCGTGGACGTGCCGCGGCTGGTGCTCCACTTCGACAGCGCTGGGTCATGGAGTAGCAGAGCTTGAGCACGGGGGCAGTGCCGCAGAACTCAGGGATTACGTCGCAGCTGAACCCGAACCTGAGATCCACGCACCCCTTCAGCTCCTCCAGGTCGTCGTCGACTCGTCGGTCAGGCTCCGCGCGTGCCGCCGCCGCCGCCACCGCTCCCGCTCCTCGCCGTACATGCGCCGCCGCCGAAGACGACGACGCCGCAGGGCTTCTCCTTGGCGACCACCACCGGCTTCGTCCGCCGTGGCCACGCCGCCTCCAACTGTACCCCGCACCACACGTCCTCGGCCTCGACCTAGGCCACCGCTGCCGCTCCGCCCGTGGCCTGCTGCCGTCGCCGCCGCGGTGCTCCGCCCGCCCTTTCGTGGCTCCAACACATCCCGTCTCTCCCGCCTCCCCTTCTCGAGCTCCATAGTCCCCACAGATCTCAGCGGCGAGCTGTGCCCGGCGGCGAGAGGACCATCGCCGCGGCCGTGCAAATCCGGCAGCTGAGCGGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_304#0 ------------------------------------------------------------ consensus_304#1 CAAAACCAGATATCCCACGTCCCTTAATTAATCAAAACCAGTCACAAGAGGTCCCTCTTA 60 consensus_304#0 ------------------------------------------------------------ consensus_304#1 ATCCCGGTTTGGTCCTACGTGGCTGCCGAGTCCAGCGTGGGACCCATGTGGGGCCCACGT 120 consensus_304#0 -----------------------------------------------------GGTGCAG 7 consensus_304#1 GTCATGGTAATCCACGTCATCACCCTTCCTTTTTCTCCTCTTCTCTCTTTCAGGGAGAGG 180 ** * * consensus_304#0 AGGGCCAGAGGCTAGCAA-CGCGAGGCGGGAAAGTGGAGGGCGGCCGGCGGCGCGACGGT 66 consensus_304#1 CAAAGCGGCGGCCGGCGGGTGCAGGGCCAGAGGCCAGCAGGAGAGAGGAGG-GCGACGGC 239 * * *** ** ** *** ** * ** * ** ** ******* consensus_304#0 GGCCGGTGCCCGACGGCGGCTGCTATAGCGGGAAACACGGCGACGCGGCGGCCCCAACGG 126 consensus_304#1 GGCCGGCGCCCAGCGGCGGCAGCTG--GCGGGAAACACGGCGACGCGGCGGCCCCGACGG 297 ****** **** ******* *** **************************** **** consensus_304#0 TGATGTCATCGACTGCGTGCCGACGCACCTGCAGCCATCCGGTTCGGGATGAAGCAGCCA 186 consensus_304#1 CGATGTCATCGACTGCGTGCCGACGCACCTGCAGCCATCCGGTTCGGGATGAAGCAGCCA 357 *********************************************************** consensus_304#0 CGCGCCGCCGACATCGTCCGCCCCGACTCCACCAACGATGGCTGCAACTCC---TGCTCG 243 consensus_304#1 CGCGTCGCCGGCGTCGTCCGCCGCGACTCCACCAATGACGACCGCGACTCCACCTGCTCG 417 **** ***** * ********* ************ ** * * ** ***** ****** consensus_304#0 CGCATGCCGAGGCGGCCTCTGTGCTGGCGCTCCTCCTGCGCGCGTTCGGCTGCCCTTGGC 303 consensus_304#1 TGCATGCCGAGGCGGCCTCTGTGCCGACGCTTCTCCTGTGCGTGTTCGGCTGCCCCTGGC 477 *********************** * **** ****** *** ************ **** consensus_304#0 GAGCGGCGCACACCTTGGCCTCAGCCTCTGCTTCGCGGGGGCCGCGCCGTAGGCCGTGGA 363 consensus_304#1 GAGCGACG------------TTAGACTCTGCTTCGCGGCGGCCGCGCCGGAGGCCGTGGA 525 ***** ** * ** ************* ********** ********** consensus_304#0 CGTGCCGCGGCTGGTGCTCCACTTCGACAGCGCTGGGTCATGGAGTAGCAGAGCTCGAGC 423 consensus_304#1 CGTGCCGCGGCTGGTGCTCCACTTCGACAGCGCTGGGTCATGGAGTAGCAGAGCTTGAGC 585 ******************************************************* **** consensus_304#0 ACGGGG-CAGTGCTACAGAGCTCGGGGATTACGTCGTAGTTGAACCCGAACCCGAGATCC 482 consensus_304#1 ACGGGGGCAGTGCCGCAGAACTCAGGGATTACGTCGCAGCTGAACCCGAACCTGAGATCC 645 ****** ****** **** *** ************ ** ************ ******* consensus_304#0 ACGCACCCCTTCAGCTCCTCTAGGTCGTCGTTGACTCGTCGGTCAAGCTCGGCGCGTGCC 542 consensus_304#1 ACGCACCCCTTCAGCTCCTCCAGGTCGTCGTCGACTCGTCGGTCAGGCTCCGCGCGTGCC 705 ******************** ********** ************* **** ********* consensus_304#0 GCCGCCGCCGTCACC---CCCGCTCCTCGCCGTACACGCGCCGCCGCCGAAGACGACGAC 599 consensus_304#1 GCCGCCGCCGCCACCGCTCCCGCTCCTCGCCGTACATGCGCCGCCGCCGAAGACGACGAC 765 ********** **** ****************** *********************** consensus_304#0 GCCGCAGGGCTCCTCCTTGGCGACCACCACCGGCTTCGTCCCCCGTGGTCACGCCGCCTC 659 consensus_304#1 GCCGCAGGGCTTCTCCTTGGCGACCACCACCGGCTTCGTCCGCCGTGGCCACGCCGCCTC 825 *********** ***************************** ****** *********** consensus_304#0 CCGCTGTACACCGCACCACACGTCTTCGGCCTCGACCTCGGCCGCCGCTTCCGCTCCGCT 719 consensus_304#1 CAACTGTACCCCGCACCACACGTCCTCGGCCTCGACCTAGGCCACCGCTGCCGCTCCGCC 885 * ****** ************** ************* **** ***** ********* consensus_304#0 CGTGGCCTGCTACCGTCGTCGCCCCGCTACTCCGCCCGCCCTTCCGCG-TTCCAACACGG 778 consensus_304#1 CGTGGCCTGCTGCCGTCGCCGCCGCGGTGCTCCGCCCGCCCTTTCGTGGCTCCAACACAT 945 *********** ****** **** ** * ************** ** * ******** consensus_304#0 CGAGCCATGCCCGGCGGCGA-----GAGGACCATCGCCGCGGCCGTGCAAATCCGGCAGC 833 consensus_304#1 CCCGTCTCTCCCGCCTCCCCTTCTCGAGCTCCATAGTCCCCACAGATCTCAGCGGCGAGC 1005 * * * **** * * *** **** * * * * * * * * * *** consensus_304#0 TGAGCGGCGGGATCCATACGGCAGCGGCGGAGGAGGAGGAGACCGGGAGATTGGCCGCCG 893 consensus_304#1 TGTGCC-CGGCGGCGAGAGGACCATCGCCGCGGCCGTGCAAATCCGGCAGCTGAGCGGCG 1064 ** ** *** * * * * * ** * ** * * * * * ** ** ** ** consensus_304#0 CACGCTGCTCCTCTCCCGCGAGCCGCCGCGCGCCGCTCCTCTTCCACAGGCCGTCGCGCG 953 consensus_304#1 T----------------------------------------------------------- 1065 consensus_304#0 CCGCTGCCTCCTCGTCGGTGAAGACTCGGAGGAAATAGAGGTAGAGAGGGGAGAGGTGGA 1013 consensus_304#1 ------------------------------------------------------------ consensus_304#0 CGCCGCCCCGCTGCACACCGCCGCCTTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGCCG 1073 consensus_304#1 ------------------------------------------------------------ consensus_304#0 CGGTCGTTTCCCCATCCGCCATGCCGCGCCGCTTCCCCATCCGCCACCCCACTGCGCGTC 1133 consensus_304#1 ------------------------------------------------------------ consensus_304#0 GCCGCCCCTTCGCTGGCCGTTGCCTGTCTCCTCCCCATGCCTTCGATGCCGCCCAACTCC 1193 consensus_304#1 ------------------------------------------------------------ consensus_304#0 AAGGCTTCCCCCACCGGCCGTGCGAGGAGCTCGGCCGGGCTGCTGCCGCCGTCGGCCGCC 1253 consensus_304#1 ------------------------------------------------------------ consensus_304#0 GTCGTGGCGCCGCCCTCCTCTCCCGCCTCACCCCGCCAACCGGCCTACAGGCACAGAGAG 1313 consensus_304#1 ------------------------------------------------------------ consensus_304#0 AGAGAGAAAGAGGAGTAACTGAGGAAGAGAAGAGAGGGAGAGTGACTTAGCCTGACATGT 1373 consensus_304#1 ------------------------------------------------------------ consensus_304#0 GGGGCCCACGTGGGGTCCCATGCTGACTCAGCCGCCACGTAGGATAAAACCGGGGTTAAA 1433 consensus_304#1 ------------------------------------------------------------ consensus_304#0 ACCACTTAAGGTTCTATTGTGACCGGTTTTGATTAATTAAGGGATGCCGGATATCTGGTT 1493 consensus_304#1 ------------------------------------------------------------ consensus_304#0 TGCGGTTTGGGGACAATTTTGTAACTCGATGACAAGTTGAGGGACCTTCGGTGTACTTTT 1553 consensus_304#1 ------------------------------------------------------------ consensus_304#0 TCTAAACTTAATAAGGTTTA 1573 consensus_304#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||