cluster # 3040

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Oryza sativa
cluster # 3040 cluster # 3040 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3040#0 length = 458 sequences # 1

consensus_3040#1 length = 329 sequences # 1

consensusID : consensus_3040#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [AGATACAGACACGCGCACTCCATTCGCCTCCCCTCCGAAACGAGTCCGAAACGGAGAGCTAAGCCAAGAAAACCCAGATCGCCGCCGGCGCAACCGCGCCGAGCCGAGCCATGGACCACCGTACCTACAAGGGCGGCGTCAAGGCGTACTGGAAGCACCGCGGCTACTACCGCCTCGACGCCGCCGCAGCGCAGCGCCGCGCGCCGCTCCCCACCGCGGAGCTCGGAGGAGGAGCCCGCGTGGCGGCGCAGCCAGCGCAGGAGCCTCGCCGCGCGCGGCGCCACCGCGGGTGGCGCAGTGCGGCGCGGGCTCGGGAGGCGGGTGCTGCGGGCAGCTGTCGCCGCGGCGGTGGCTCGTGCGCCTCCGGGACGCCTACGTCTCGGCCATGCTGCGGCTGGCGTCGTCCCCGGCCGTCGGGTTCGGCGCCGGCGCGCCCTACTGCACCGCGGGCCAGGAGT]

[+] EMBL BI796677             [AGATACAGACACGCGCACTCCATTCGCCTCCCCTCCGAAACGAGTCCGAAACGGAGAGCTAAGCCAAGAAAACCCAGATCGCCGCCGGCGCAACCGCGCCGAGCCGAGCCATGGACCACCGTACCTACAAGGGCGGCGTCAAGGCGTACTGGAAGCACCGCGGCTACTACCGCCTCGACGCCGCCGCAGCGCAGCGCCGCGCGCCGCTCCCCACCGCGGAGCTCGGAGGAGGAGCCCGCGTGGCGGCGCAGCCAGCGCAGGAGCCTCGCCGCGCGCGGCGCCACCGCGGGTGGCGCAGTGCGGCGCGGGCTCGGGAGGCGGGTGCTGCGGGCAGCTGTCGCCGCGGCGGTGGCTCGTGCGCCTCCGGGACGCCTACGTCTCGGCCATGCTGCGGCTGGCGTCGTCCCCGGCCGTCGGGTTCGGCGCCGGCGCGCCCTACTGCACCGCGGGCCAGGAGT]




>consensus_3040#0
AGATACAGACACGCGCACTCCATTCGCCTCCCCTCCGAAACGAGTCCGAAACGGAGAGCT
AAGCCAAGAAAACCCAGATCGCCGCCGGCGCAACCGCGCCGAGCCGAGCCATGGACCACC
GTACCTACAAGGGCGGCGTCAAGGCGTACTGGAAGCACCGCGGCTACTACCGCCTCGACG
CCGCCGCAGCGCAGCGCCGCGCGCCGCTCCCCACCGCGGAGCTCGGAGGAGGAGCCCGCG
TGGCGGCGCAGCCAGCGCAGGAGCCTCGCCGCGCGCGGCGCCACCGCGGGTGGCGCAGTG
CGGCGCGGGCTCGGGAGGCGGGTGCTGCGGGCAGCTGTCGCCGCGGCGGTGGCTCGTGCG
CCTCCGGGACGCCTACGTCTCGGCCATGCTGCGGCTGGCGTCGTCCCCGGCCGTCGGGTT
CGGCGCCGGCGCGCCCTACTGCACCGCGGGCCAGGAGT

consensusID : consensus_3040#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [CCGAAACGGAGAGCTAAGCCAAGAAAACCCAGATCGCCGCCGGGGCAACCGCGCCGAGCCGAGCCATGGACCACCGTACCTACAAGGGCGGCGTCAAGGCGTACTGGAAGCACCGCGGCTACTACCGCCTCGACGNCGCCGCGGCGCAGGCCGCGCGCCGCTCCCCACCGCGGAGTCGGAGGAGGAGNGCGGCGTGGCGGCGCGCCACNAGNGNAGCCTCGCCGCGCGCGGGCCACCGCGGGTGGNGTTGCGGCACGGGCTCGGGAGGCGGGTGCTGCGGGCGCTGTCGCCGCGGCGGTGGNTCGTGCGCCTTCGGGACGGCTACGTTT]

[+] EMBL AU164279             [CCGAAACGGAGAGCTAAGCCAAGAAAACCCAGATCGCCGCCGGGGCAACCGCGCCGAGCCGAGCCATGGACCACCGTACCTACAAGGGCGGCGTCAAGGCGTACTGGAAGCACCGCGGCTACTACCGCCTCGACGNCGCCGCGGCGCAGGCCGCGCGCCGCTCCCCACCGCGGAGTCGGAGGAGGAGNGCGGCGTGGCGGCGCGCCACNAGNGNAGCCTCGCCGCGCGCGGGCCACCGCGGGTGGNGTTGCGGCACGGGCTCGGGAGGCGGGTGCTGCGGGCGCTGTCGCCGCGGCGGTGGNTCGTGCGCCTTCGGGACGGCTACGTTT]




>consensus_3040#1
CCGAAACGGAGAGCTAAGCCAAGAAAACCCAGATCGCCGCCGGGGCAACCGCGCCGAGCC
GAGCCATGGACCACCGTACCTACAAGGGCGGCGTCAAGGCGTACTGGAAGCACCGCGGCT
ACTACCGCCTCGACGNCGCCGCGGCGCAGGCCGCGCGCCGCTCCCCACCGCGGAGTCGGA
GGAGGAGNGCGGCGTGGCGGCGCGCCACNAGNGNAGCCTCGCCGCGCGCGGGCCACCGCG
GGTGGNGTTGCGGCACGGGCTCGGGAGGCGGGTGCTGCGGGCGCTGTCGCCGCGGCGGTG
GNTCGTGCGCCTTCGGGACGGCTACGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3040#0      AGATACAGACACGCGCACTCCATTCGCCTCCCCTCCGAAACGAGTCCGAAACGGAGAGCT 60
consensus_3040#1      ---------------------------------------------CCGAAACGGAGAGCT 15
                                                                   ***************

consensus_3040#0      AAGCCAAGAAAACCCAGATCGCCGCCGGCGCAACCGCGCCGAGCCGAGCCATGGACCACC 120
consensus_3040#1      AAGCCAAGAAAACCCAGATCGCCGCCGGGGCAACCGCGCCGAGCCGAGCCATGGACCACC 75
                      **************************** *******************************

consensus_3040#0      GTACCTACAAGGGCGGCGTCAAGGCGTACTGGAAGCACCGCGGCTACTACCGCCTCGACG 180
consensus_3040#1      GTACCTACAAGGGCGGCGTCAAGGCGTACTGGAAGCACCGCGGCTACTACCGCCTCGACG 135
                      ************************************************************

consensus_3040#0      CCGCCGCAGCGCAGCGCCGCGCGCCGCTCCCCACCGCGGAGCTCGGAGGAGGAGCCCG-C 239
consensus_3040#1      NCGCCGCGGCGCAG-GCCGCGCGCCGCTCCCCACCGCGGAG-TCGGAGGAGGAGNGCGGC 193
                       ****** ****** ************************** ************  ** *

consensus_3040#0      GTGGCGGCGCAGCCAGCGCAGGAGCCTCGCCGCGCGCGGCGCCACCGCGGGTGGCGCAGT 299
consensus_3040#1      GTGGCGGCGC-GCCACNAGNGNAGCCTCGCCGCGCGCGG-GCCACCGCGGGTGGNGT--T 249
                      ********** ****     * ***************** ************** *   *

consensus_3040#0      GCGGCGCGGGCTCGGGAGGCGGGTGCTGCGGGCAGCTGTCGCCGCGGCGGTGGCTCGTGC 359
consensus_3040#1      GCGGCACGGGCTCGGGAGGCGGGTGCTGCGGGC-GCTGTCGCCGCGGCGGTGGNTCGTGC 308
                      ***** *************************** ******************* ******

consensus_3040#0      GCCTCCGGGACGCCTACGTCTCGGCCATGCTGCGGCTGGCGTCGTCCCCGGCCGTCGGGT 419
consensus_3040#1      GCCTTCGGGACGGCTACGTTT--------------------------------------- 329
                      **** ******* ****** *                                       

consensus_3040#0      TCGGCGCCGGCGCGCCCTACTGCACCGCGGGCCAGGAGT 458
consensus_3040#1      ---------------------------------------