These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 903 fasta sequence [AAAATCGCCCGGCTCCCTCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCACCGGCGGCCTCCCTCCTCGACAACGACGACGACCGTGACGCCGCCGACTGCTCCCTCCATTCCAGATCCGCGCGCCGCCGGCTCCCTCCTCTTCCACGTCCGCGCAGCCGGCTCCCTCCACAACGACGTCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGCGGCCTCCCTCCTCGACGATGACGACAACCGCGACGCCTCCGACGGCTCCCTCCGCTCCAGATCCGCGCGCCGCCGGCTCACTCCTCTCCCACGTCCAGGCTGTCGGCTCCCTCCACGACGACGTCCGCGCGCTGCCGCATCCCTCCGTCGCTGGCCATGACGAGCGACGACGACGGCTCCAGATCCGCGCGTTGCCGGCTCCCTCCTCTCCCACGTCCGCGCCACTGGCTCCCTTCACGACAACGTCCGCGCGCCGCCGCATCCCTCCGCTGCCGGCCACGACGAGCGACGACGACGGCTCCAGATCCGTGCGCCGCCGGCTTCCCTCCTCGCCGCCTCTACCAGCCGCTTCATCTCCTCGCCCCCTCCGCCGCCGCGCCGACAACGACGATGACGGTGACGATGACGACGACGACGGCGCCGACGACGACGGGTGGAGGGGAGCCCTGGCCGGCGGTGCCCCGTGGTTTTTTTTATTTTCCTGGGATGATTTTCGCTGGCGGGCCACGGGCGCGCTTGCGAAAATGGTTTAATTTCACAGTCGAGATGGTAGCGGCGATCCTCTTCCCCTCCTGTGAAAATGGTTTTGGGCCGCCTGGAAAAATCTTTTTTTCTAGTAGTGATCCATTCCATCTGATGACAGGAAAACAAAGTTAGGTACTTTTCTCCATATATCGGGTCTA] [+] EMBL AK110629 [AAAATCGCCCGGCTCCCTCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCACCGGCGGCCTCCCTCCTCGACAACGACGACGACCGTGACGCCGCCGACTGCTCCCTCCATTCCAGATCCGCGCGCCGCCGGCTCCCTCCTCTTCCACGTCCGCGCAGCCGGCTCCCTCCACAACGACGTCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGCGGCCTCCCTCCTCGACGATGACGACAACCGCGACGCCTCCGACGGCTCCCTCCGCTCCAGATCCGCGCGCCGCCGGCTCACTCCTCTCCCACGTCCAGGCTGTCGGCTCCCTCCACGACGACGTCCGCGCGCTGCCGCATCCCTCCGTCGCTGGCCATGACGAGCGACGACGACGGCTCCAGATCCGCGCGTTGCCGGCTCCCTCCTCTCCCACGTCCGCGCCACTGGCTCCCTTCACGACAACGTCCGCGCGCCGCCGCATCCCTCCGCTGCCGGCCACGACGAGCGACGACGACGGCTCCAGATCCGTGCGCCGCCGGCTTCCCTCCTCGCCGCCTCTACCAGCCGCTTCATCTCCTCGCCCCCTCCGCCGCCGCGCCGACAACGACGATGACGGTGACGATGACGACGACGACGGCGCCGACGACGACGGGTGGAGGGGAGCCCTGGCCGGCGGTGCCCCGTGGTTTTTTTTATTTTCCTGGGATGATTTTCGCTGGCGGGCCACGGGCGCGCTTGCGAAAATGGTTTAATTTCACAGTCGAGATGGTAGCGGCGATCCTCTTCCCCTCCTGTGAAAATGGTTTTGGGCCGCCTGGAAAAATCTTTTTTTCTAGTAGTGATCCATTCCATCTGATGACAGGAAAACAAAGTTAGGTACTTTTCTCCATATATCGGGTCTA] consensusID : consensus_3042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [AGAAATCGCCGGCTCCTCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCGCCGGCGGGCTCCCTCCTCGACAACGACAAAAAANCGTGACGCCGCCGACTGCTCCCTCCGCTCCAGATTCGCGCGCCGCCGGNTCCCTCCTCTTCCACGTNCGCGCAGCCGGNTCCCTCCACAACGANATCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGGGGGCTCCCTCCTCGACNANAAAAAAAACCGCGANCCTCCGANGGGTCCCTCCGCTCTNNATTCGCGCGCCGCCGGGTCACTCCTCTCCCACGTNCACGCTGTNGGGTCCCTCCACNAAAAANATNCGCGCGCCGCCGCATCCCTCCGTCNCTGGGCNCGAAAAGCGACAAAAAAGGTCCNGATTNGCGCGTNNCCNGGTCCCTCCTCTCCCACNTTTTGGGCCGCTGGGTCCCTTCACAAAAAATTCGGGGCGCCGCCGGCATCCNTCCCTTGCNGGGCNNNAAAAANAAAAAAAAAAGGGTCCNAATTTTTTNGGNCGCCGGGG] [+] EMBL BE229694 [AGAAATCGCCGGCTCCTCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCGCCGGCGGGCTCCCTCCTCGACAACGACAAAAAANCGTGACGCCGCCGACTGCTCCCTCCGCTCCAGATTCGCGCGCCGCCGGNTCCCTCCTCTTCCACGTNCGCGCAGCCGGNTCCCTCCACAACGANATCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGGGGGCTCCCTCCTCGACNANAAAAAAAACCGCGANCCTCCGANGGGTCCCTCCGCTCTNNATTCGCGCGCCGCCGGGTCACTCCTCTCCCACGTNCACGCTGTNGGGTCCCTCCACNAAAAANATNCGCGCGCCGCCGCATCCCTCCGTCNCTGGGCNCGAAAAGCGACAAAAAAGGTCCNGATTNGCGCGTNNCCNGGTCCCTCCTCTCCCACNTTTTGGGCCGCTGGGTCCCTTCACAAAAAATTCGGGGCGCCGCCGGCATCCNTCCCTTGCNGGGCNNNAAAAANAAAAAAAAAAGGGTCCNAATTTTTTNGGNCGCCGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3042#0 -AAAATCGCCCGGCTCCCTCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCAC 59 consensus_3042#1 AGAAATCGCC-GGCTCC-TCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCGC 58 ******** ****** **************************************** * consensus_3042#0 CGGCGGCCTCCCTCCTCGACAACGACGACGA-CCGTGACGCCGCCGACTGCTCCCTCCAT 118 consensus_3042#1 CGGCGGGCTCCCTCCTCGACAACGACAAAAAANCGTGACGCCGCCGACTGCTCCCTCCGC 118 ****** ******************* * * ************************* consensus_3042#0 TCCAGATCCGCGCGCCGCCGGCTCCCTCCTCTTCCACGTCCGCGCAGCCGGCTCCCTCCA 178 consensus_3042#1 TCCAGATTCGCGCGCCGCCGGNTCCCTCCTCTTCCACGTNCGCGCAGCCGGNTCCCTCCA 178 ******* ************* ***************** *********** ******** consensus_3042#0 CAACGACGTCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGCGGCCTCCCTCCTCGACGA 238 consensus_3042#1 CAACGANATCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGGGGGCTCCCTCCTCGACNA 238 ****** ********************************* ** ************* * consensus_3042#0 TGACGACAACCGCGACGCCTCCGACGGCTCCCTCCGCTCCAGATCCGCGCGCCGCCGGCT 298 consensus_3042#1 NAAAAAAAACCGCGAN-CCTCCGANGGGTCCCTCCGCTCTNNATTCGCGCGCCGCCGGGT 297 * * ******** ******* ** *********** ** ************* * consensus_3042#0 CACTCCTCTCCCACGTCCAGGCTGTCGGCTCCCTCCACGACGA-CGTCCGCGCGCTGCCG 357 consensus_3042#1 CACTCCTCTCCCACGTNCACGCTGTNGGGTCCCTCCACNAAAAANATNCGCGCGCCGCCG 357 **************** ** ***** ** ********* * * * ******* **** consensus_3042#0 CATCCCTCCGTCGCTGGCCATGACGAGCGACGACGACGGCTCCAGATCCGCGCGTTGCCG 417 consensus_3042#1 CATCCCTCCGTCNCTGGGCNCGAAAAGCGACAAAAAAGG-TCCNGATTNGCGCGTNNCCN 416 ************ **** * ** ****** * * ** *** *** ****** ** consensus_3042#0 GCTCCCTCCTCTCCCACGTCC-GCGCCACTGGCTCCCTTCACGACAACGTCCGCGCGCCG 476 consensus_3042#1 GGTCCCTCCTCTCCCACNTTTTGGGCCGCTGGGTCCCTTCACAAAAAATTCGGGGCGCCG 476 * *************** * * *** **** ********* * ** ** * ****** consensus_3042#0 CCG-CATCCCTCCGCTGCCGGCCACGACGAGCGACGACGAC--GGCTCCAGATCCGTGCG 533 consensus_3042#1 CCGGCATCCNTCCCTTGCNGGGCNNNAAAAANAAAAAAAAAAGGGTCCNAATTTTTTNGG 536 *** ***** *** *** ** * * * * * * ** * * * * * consensus_3042#0 CCGCCGGCTTCCCTCCTCGCCGCCTCTACCAGCCGCTTCATCTCCTCGCCCCCTCCGCCG 593 consensus_3042#1 NCGCCGGGG--------------------------------------------------- 545 ****** consensus_3042#0 CCGCGCCGACAACGACGATGACGGTGACGATGACGACGACGACGGCGCCGACGACGACGG 653 consensus_3042#1 ------------------------------------------------------------ consensus_3042#0 GTGGAGGGGAGCCCTGGCCGGCGGTGCCCCGTGGTTTTTTTTATTTTCCTGGGATGATTT 713 consensus_3042#1 ------------------------------------------------------------ consensus_3042#0 TCGCTGGCGGGCCACGGGCGCGCTTGCGAAAATGGTTTAATTTCACAGTCGAGATGGTAG 773 consensus_3042#1 ------------------------------------------------------------ consensus_3042#0 CGGCGATCCTCTTCCCCTCCTGTGAAAATGGTTTTGGGCCGCCTGGAAAAATCTTTTTTT 833 consensus_3042#1 ------------------------------------------------------------ consensus_3042#0 CTAGTAGTGATCCATTCCATCTGATGACAGGAAAACAAAGTTAGGTACTTTTCTCCATAT 893 consensus_3042#1 ------------------------------------------------------------ consensus_3042#0 ATCGGGTCTA 903 consensus_3042#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||