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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1731 fasta sequence
[TCATGATATTCATTTTGTTTCAATACTAAAAACTTTCATGCTCTTAAATTTGCTACAAACTTAGTATTCTTTCTGAAGAATTGATCAAGAAGCTCGCGGGGCGGCGAAACTTACAGCGAGCCGGTGAGCACGGCGAAGATGACATTCATGACCTGAGCTCCGGTGTATCCCTTCTCCAGAATCAGCTTGGCACCGTACCAAATCCCCAATGAGTAGCCACAGAAGAGGAGCACCATCACCGTGCCCATGCCCACGCCGGCGGCGAGCCCCTCCCTGACGCCGGAGCTGTACACTCTCTTCAGTGACCTACTGTACTTCGCCACCGCCTGCTTCTCGCCGGTGAACGACGCAACCTGTGTTGAGCCGGGTGTTCAGGGCCATGGCGGCGCGGAGAAATGGATGGTAGCTGAGGTGTTCGACGGAATGTTTTTACTGTTCTGATGGAGCCGATGGTCTGCTCGACGACGACGGAGGCGTCGGCGTAGGCGGCCTGGCCGAGCGACGCCATCCTGGCGACGACATTGGACATGACGGCGCCGGAGAGGACGAGCGGCGGGATGGTGGCGAGCATGACGAGGGTGAGGAGCCACCCCTGCGCGAACGCCACGCCGAAGCCGCCCAGGAACGTGACGAGGAGCTGGACGAACTTGCCCACCTTCTCCCCCATGGCGTCCTGGATCAGCACCGTGTCGCCGGACATCCTGCCCACCACCTCGCCGGTGTTGGTGTGCTTGTCGAAGAAGGCGACCTCCTGCCGGAGTATCGTCCTCAGGTACAGACTCCGTATCCGCGCCGCCTGCCGCTCGCCGGTGATCATCCAGCACGCCACCTCTGATGAAGAACACGATCGATCACGGTGAGCTTGTCGCTGCGAGCGAGATTGCGAGTCAAGTGGTGGCGCGGCGCGGCGCACTTACGGATGAACGACGCGGCGGCCGAGGCGACGGCGAGGTAGATGAACTGGAGCGACACCTCGGAGACGCGCGCCACGACGTCGCCGCCCGCGGCGCCGCCGAAGGCGTCGATGAGGCCGCCGAACAGCACGGTCATGAACGGCAGCGCGGCGCCGTTCGCCACCGCGCCCAGCGTCCCGAGCAGCATCAGCGCCGCGTCCGTGCCGTCCGCGAACGCGAACAGCCGGTGGAACGCCACGCTCCCCCCGCCACCATTCTTCCCCGTCGTTCCAGCCACCGCCTCGCCGCCGCCGCCGCCGCCGGACGACGACGACGACGCATTCACTCCGAACGCCCTGCTCGACTCCGGCATGCTCTGCAAACCCAAGATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCAAACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATCAAAGAACAACGAGGTGGATCAATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATTGCGATTTGCGAGGAGAATCTAAAGAGAAAGGTGCAGAGTTAAAAAGCAAAGCACACTGGCACCTTTGCTCAGCTACCCGACACTGTCCGAATTTCTTGCTTGCTTAATATCATAATAATATAATTGGAGAAATACAAAAGTTTGATCTAAATAAATAGATAAATAAAGGTGGGGAAAATTCCGGGACATTTCACATGGTTTTTCATCCTCTGCCATCACATTTCTCTGGTTGCTTGCCGTCTGCTGCTGTACAGGTTTATGAAAGCTTT]
[+] EMBL AK107339 [TCATGATATTCATTTTGTTTCAATACTAAAAACTTTCATGCTCTTAAATTTGCTACAAACTTAGTATTCTTTCTGAAGAATTGATCAAGAAGCTCGCGGGGCGGCGAAACTTACAGCGAGCCGGTGAGCACGGCGAAGATGACATTCATGACCTGAGCTCCGGTGTATCCCTTCTCCAGAATCAGCTTGGCACCGTACCAAATCCCCAATGAGTAGCCACAGAAGAGGAGCACCATCACCGTGCCCATGCCCACGCCGGCGGCGAGCCCCTCCCTGACGCCGGAGCTGTACACTCTCTTCAGTGACCTACTGTACTTCGCCACCGCCTGCTTCTCGCCGGTGAACGACGCAACCTGTGTTGAGCCGGGTGTTCAGGGCCATGGCGGCGCGGAGAAATGGATGGTAGCTGAGGTGTTCGACGGAATGTTTTTACTGTTCTGATGGAGCCGATGGTCTGCTCGACGACGACGGAGGCGTCGGCGTAGGCGGCCTGGCCGAGCGACGCCATCCTGGCGACGACATTGGACATGACGGCGCCGGAGAGGACGAGCGGCGGGATGGTGGCGAGCATGACGAGGGTGAGGAGCCACCCCTGCGCGAACGCCACGCCGAAGCCGCCCAGGAACGTGACGAGGAGCTGGACGAACTTGCCCACCTTCTCCCCCATGGCGTCCTGGATCAGCACCGTGTCGCCGGACATCCTGCCCACCACCTCGCCGGTGTTGGTGTGCTTGTCGAAGAAGGCGACCTCCTGCCGGAGTATCGTCCTCAGGTACAGACTCCGTATCCGCGCCGCCTGCCGCTCGCCGGTGATCATCCAGCACGCCACCTCTGATGAAGAACACGATCGATCACGGTGAGCTTGTCGCTGCGAGCGAGATTGCGAGTCAAGTGGTGGCGCGGCGCGGCGCACTTACGGATGAACGACGCGGCGGCCGAGGCGACGGCGAGGTAGATGAACTGGAGCGACACCTCGGAGACGCGCGCCACGACGTCGCCGCCCGCGGCGCCGCCGAAGGCGTCGATGAGGCCGCCGAACAGCACGGTCATGAACGGCAGCGCGGCGCCGTTCGCCACCGCGCCCAGCGTCCCGAGCAGCATCAGCGCCGCGTCCGTGCCGTCCGCGAACGCGAACAGCCGGTGGAACGCCACGCTCCCCCCGCCACCATTCTTCCCCGTCGTTCCAGCCACCGCCTCGCCGCCGCCGCCGCCGCCGGACGACGACGACGACGCATTCACTCCGAACGCCCTGCTCGACTCCGGCATGCTCTGCAAACCCAAGATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCAAACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATCAAAGAACAACGAGGTGGATCAATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATTGCGATTTGCGAGGAGAATCTAAAGAGAAAGGTGCAGAGTTAAAAAGCAAAGCACACTGGCACCTTTGCTCAGCTACCCGACACTGTCCGAATTTCTTGCTTGCTTAATATCATAATAATATAATTGGAGAAATACAAAAGTTTGATCTAAATAAATAGATAAATAAAGGTGGGGAAAATTCCGGGACATTTCACATGGTTTTTCATCCTCTGCCATCACATTTCTCTGGTTGCTTGCCGTCTGCTGCTGTACAGGTTTATGAAAGCTTT]
consensusID : consensus_3056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1546 fasta sequence
[GTCAATCATACTTGTCATGATATTCATTTTTTTTTCAATCCTAAAAACTTCCATACTCTTAATATCCTTGACAAGACTATTTGTCAATCATACTTCTTTCATGATATTCATTTTGTTTCAATACTAAAAACTTTCATGCTCTTAAATTTGCTACAAACTTAGTATTCTTTCTGAAGAATTGATCAAGAAGCTCGCGGGGCGGCGAAACTTACAGCGAGCCGGTGAGCACGGCGAAGATGACATTCATGACCTGAGCTCCGGTGTATCCCTTCTCCAGAATCAGCTTGGCACCGTACCAAATCCCCAATGAGTAGCCACAGAAGAGGAGCACCATCACCGTGCCCATGCCCACGCCGGCGGCGAGCCCCTCCCTGACGCCGGAGCTGTACGCTCTCTTCAGTGACCTACTGTACTTCGCCACCGCCTGCTTCTCGCCGGTGAACGACGCAACCTGTGTTGAGCCGGGTGTTCAGGGCCATGGCGGCGCGGAGAAATGGATGGTAGCTGAGGTGTTCGACGGAATGTTTTTACTGTTCTGATGGAGCCGATGGTCTGCTCGACGACGACGGAGGCGTCGGCGTAGGCGGCCTGGCCGAGCGACGCCATCCTGGCGACGACATTGGACATGACGGCGCCGGAGAGGACGAGCGGCGGGATGGTGGCGAGCATGACGAGGGTGAGGAGCCACCCCTGCGCGAACGCCACGCCGAAGCCGCCCAGGAACGTGACGAGGAGCTGGACGAACTTGCCCACCTTCTCCCCCATGGCGTCCTGGATCAGCACCGTGTCGCCGGACATCCTGCCCACCACCTCGCCGGTGTTGGTGTGCTTGTCGAAGAAGGCGACCTCCTGCCGGAGTATCGTCCTCAGGTACAGACTCCGTATCCGCGCCGCCTGCCGCTCGCCGGTGATCATCCAGCACGCCACCTGGATGAACGACGCGGCGGCCGAGGCGACGGCGAGGTAGATGAACTGGAGCGACACCTCGGAGACGCGCGCCACGACGTCGCCGCCCGCGGCGCCGCCGAAGGCGTCGATGAGGCCGCCGAACAGCACGGTCATGAACGGCAGCGCGGCGCCGTTCGCCACCGCGCCCAGCGTCCCGAGCAGCATCAGCGCCGCGTCCGTGCCGTCCGCGAACGCGAACAGCCGGTGGAACGCCACGCTCCCCCCGCCACCATTCTTCCCCGTCGTTCCAGCCACCGCCTCGCCGCCGCCGCCGCCGCCGGACGACGACGACGACGCATTCACTCCGAACGCCCTGCTCGACTCCGACATGCTCTGCAAACCCAAGATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCAAACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATCAAAGAACAACGAGGTGGATCAATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATTGCGATTTGCGAGGAGAAGCTAAAGAGAAAGGTGCAGAGTTAAAAAGCAAAGCACACTGGCACCTTTGCTCAG]
[-] EMBL AK110841 [GTCAATCATACTTGTCATGATATTCATTTTTTTTTCAATCCTAAAAACTTCCATACTCTTAATATCCTTGACAAGACTATTTGTCAATCATACTTCTTTCATGATATTCATTTTGTTTCAATACTAAAAACTTTCATGCTCTTAAATTTGCTACAAACTTAGTATTCTTTCTGAAGAATTGATCAAGAAGCTCGCGGGGCGGCGAAACTTACAGCGAGCCGGTGAGCACGGCGAAGATGACATTCATGACCTGAGCTCCGGTGTATCCCTTCTCCAGAATCAGCTTGGCACCGTACCAAATCCCCAATGAGTAGCCACAGAAGAGGAGCACCATCACCGTGCCCATGCCCACGCCGGCGGCGAGCCCCTCCCTGACGCCGGAGCTGTACGCTCTCTTCAGTGACCTACTGTACTTCGCCACCGCCTGCTTCTCGCCGGTGAACGACGCAACCTGTGTTGAGCCGGGTGTTCAGGGCCATGGCGGCGCGGAGAAATGGATGGTAGCTGAGGTGTTCGACGGAATGTTTTTACTGTTCTGATGGAGCCGATGGTCTGCTCGACGACGACGGAGGCGTCGGCGTAGGCGGCCTGGCCGAGCGACGCCATCCTGGCGACGACATTGGACATGACGGCGCCGGAGAGGACGAGCGGCGGGATGGTGGCGAGCATGACGAGGGTGAGGAGCCACCCCTGCGCGAACGCCACGCCGAAGCCGCCCAGGAACGTGACGAGGAGCTGGACGAACTTGCCCACCTTCTCCCCCATGGCGTCCTGGATCAGCACCGTGTCGCCGGACATCCTGCCCACCACCTCGCCGGTGTTGGTGTGCTTGTCGAAGAAGGCGACCTCCTGCCGGAGTATCGTCCTCAGGTACAGACTCCGTATCCGCGCCGCCTGCCGCTCGCCGGTGATCATCCAGCACGCCACCTGGATGAACGACGCGGCGGCCGAGGCGACGGCGAGGTAGATGAACTGGAGCGACACCTCGGAGACGCGCGCCACGACGTCGCCGCCCGCGGCGCCGCCGAAGGCGTCGATGAGGCCGCCGAACAGCACGGTCATGAACGGCAGCGCGGCGCCGTTCGCCACCGCGCCCAGCGTCCCGAGCAGCATCAGCGCCGCGTCCGTGCCGTCCGCGAACGCGAACAGCCGGTGGAACGCCACGCTCCCCCCGCCACCATTCTTCCCCGTCGTTCCAGCCACCGCCTCGCCGCCGCCGCCGCCGCCGGACGACGACGACGACGCATTCACTCCGAACGCCCTGCTCGACTCCGACATGCTCTGCAAACCCAAGATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCAAACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATCAAAGAACAACGAGGTGGATCAATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATTGCGATTTGCGAGGAGAAGCTAAAGAGAAAGGTGCAGAGTTAAAAAGCAAAGCACACTGGCACCTTTGCTCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3056#0 ------------------------------------------------------------
consensus_3056#1 GTCAATCATACTTGTCATGATATTCATTTTTTTTTCAATCCTAAAAACTTCCATACTCTT 60
consensus_3056#0 --------------------------------------TCATGATATTCATTTTGTTTCA 22
consensus_3056#1 AATATCCTTGACAAGACTATTTGTCAATCATACTTCTTTCATGATATTCATTTTGTTTCA 120
**********************
consensus_3056#0 ATACTAAAAACTTTCATGCTCTTAAATTTGCTACAAACTTAGTATTCTTTCTGAAGAATT 82
consensus_3056#1 ATACTAAAAACTTTCATGCTCTTAAATTTGCTACAAACTTAGTATTCTTTCTGAAGAATT 180
************************************************************
consensus_3056#0 GATCAAGAAGCTCGCGGGGCGGCGAAACTTACAGCGAGCCGGTGAGCACGGCGAAGATGA 142
consensus_3056#1 GATCAAGAAGCTCGCGGGGCGGCGAAACTTACAGCGAGCCGGTGAGCACGGCGAAGATGA 240
************************************************************
consensus_3056#0 CATTCATGACCTGAGCTCCGGTGTATCCCTTCTCCAGAATCAGCTTGGCACCGTACCAAA 202
consensus_3056#1 CATTCATGACCTGAGCTCCGGTGTATCCCTTCTCCAGAATCAGCTTGGCACCGTACCAAA 300
************************************************************
consensus_3056#0 TCCCCAATGAGTAGCCACAGAAGAGGAGCACCATCACCGTGCCCATGCCCACGCCGGCGG 262
consensus_3056#1 TCCCCAATGAGTAGCCACAGAAGAGGAGCACCATCACCGTGCCCATGCCCACGCCGGCGG 360
************************************************************
consensus_3056#0 CGAGCCCCTCCCTGACGCCGGAGCTGTACACTCTCTTCAGTGACCTACTGTACTTCGCCA 322
consensus_3056#1 CGAGCCCCTCCCTGACGCCGGAGCTGTACGCTCTCTTCAGTGACCTACTGTACTTCGCCA 420
***************************** ******************************
consensus_3056#0 CCGCCTGCTTCTCGCCGGTGAACGACGCAACCTGTGTTGAGCCGGGTGTTCAGGGCCATG 382
consensus_3056#1 CCGCCTGCTTCTCGCCGGTGAACGACGCAACCTGTGTTGAGCCGGGTGTTCAGGGCCATG 480
************************************************************
consensus_3056#0 GCGGCGCGGAGAAATGGATGGTAGCTGAGGTGTTCGACGGAATGTTTTTACTGTTCTGAT 442
consensus_3056#1 GCGGCGCGGAGAAATGGATGGTAGCTGAGGTGTTCGACGGAATGTTTTTACTGTTCTGAT 540
************************************************************
consensus_3056#0 GGAGCCGATGGTCTGCTCGACGACGACGGAGGCGTCGGCGTAGGCGGCCTGGCCGAGCGA 502
consensus_3056#1 GGAGCCGATGGTCTGCTCGACGACGACGGAGGCGTCGGCGTAGGCGGCCTGGCCGAGCGA 600
************************************************************
consensus_3056#0 CGCCATCCTGGCGACGACATTGGACATGACGGCGCCGGAGAGGACGAGCGGCGGGATGGT 562
consensus_3056#1 CGCCATCCTGGCGACGACATTGGACATGACGGCGCCGGAGAGGACGAGCGGCGGGATGGT 660
************************************************************
consensus_3056#0 GGCGAGCATGACGAGGGTGAGGAGCCACCCCTGCGCGAACGCCACGCCGAAGCCGCCCAG 622
consensus_3056#1 GGCGAGCATGACGAGGGTGAGGAGCCACCCCTGCGCGAACGCCACGCCGAAGCCGCCCAG 720
************************************************************
consensus_3056#0 GAACGTGACGAGGAGCTGGACGAACTTGCCCACCTTCTCCCCCATGGCGTCCTGGATCAG 682
consensus_3056#1 GAACGTGACGAGGAGCTGGACGAACTTGCCCACCTTCTCCCCCATGGCGTCCTGGATCAG 780
************************************************************
consensus_3056#0 CACCGTGTCGCCGGACATCCTGCCCACCACCTCGCCGGTGTTGGTGTGCTTGTCGAAGAA 742
consensus_3056#1 CACCGTGTCGCCGGACATCCTGCCCACCACCTCGCCGGTGTTGGTGTGCTTGTCGAAGAA 840
************************************************************
consensus_3056#0 GGCGACCTCCTGCCGGAGTATCGTCCTCAGGTACAGACTCCGTATCCGCGCCGCCTGCCG 802
consensus_3056#1 GGCGACCTCCTGCCGGAGTATCGTCCTCAGGTACAGACTCCGTATCCGCGCCGCCTGCCG 900
************************************************************
consensus_3056#0 CTCGCCGGTGATCATCCAGCACGCCACCTCTGATGAAGAACACGATCGATCACGGTGAGC 862
consensus_3056#1 CTCGCCGGTGATCATCCAGCACGCCACCT------------------------------- 929
*****************************
consensus_3056#0 TTGTCGCTGCGAGCGAGATTGCGAGTCAAGTGGTGGCGCGGCGCGGCGCACTTACGGATG 922
consensus_3056#1 -------------------------------------------------------GGATG 934
*****
consensus_3056#0 AACGACGCGGCGGCCGAGGCGACGGCGAGGTAGATGAACTGGAGCGACACCTCGGAGACG 982
consensus_3056#1 AACGACGCGGCGGCCGAGGCGACGGCGAGGTAGATGAACTGGAGCGACACCTCGGAGACG 994
************************************************************
consensus_3056#0 CGCGCCACGACGTCGCCGCCCGCGGCGCCGCCGAAGGCGTCGATGAGGCCGCCGAACAGC 1042
consensus_3056#1 CGCGCCACGACGTCGCCGCCCGCGGCGCCGCCGAAGGCGTCGATGAGGCCGCCGAACAGC 1054
************************************************************
consensus_3056#0 ACGGTCATGAACGGCAGCGCGGCGCCGTTCGCCACCGCGCCCAGCGTCCCGAGCAGCATC 1102
consensus_3056#1 ACGGTCATGAACGGCAGCGCGGCGCCGTTCGCCACCGCGCCCAGCGTCCCGAGCAGCATC 1114
************************************************************
consensus_3056#0 AGCGCCGCGTCCGTGCCGTCCGCGAACGCGAACAGCCGGTGGAACGCCACGCTCCCCCCG 1162
consensus_3056#1 AGCGCCGCGTCCGTGCCGTCCGCGAACGCGAACAGCCGGTGGAACGCCACGCTCCCCCCG 1174
************************************************************
consensus_3056#0 CCACCATTCTTCCCCGTCGTTCCAGCCACCGCCTCGCCGCCGCCGCCGCCGCCGGACGAC 1222
consensus_3056#1 CCACCATTCTTCCCCGTCGTTCCAGCCACCGCCTCGCCGCCGCCGCCGCCGCCGGACGAC 1234
************************************************************
consensus_3056#0 GACGACGACGCATTCACTCCGAACGCCCTGCTCGACTCCGGCATGCTCTGCAAACCCAAG 1282
consensus_3056#1 GACGACGACGCATTCACTCCGAACGCCCTGCTCGACTCCGACATGCTCTGCAAACCCAAG 1294
**************************************** *******************
consensus_3056#0 ATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCA 1342
consensus_3056#1 ATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCA 1354
************************************************************
consensus_3056#0 AACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATC 1402
consensus_3056#1 AACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATC 1414
************************************************************
consensus_3056#0 AAAGAACAACGAGGTGGATCAATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATT 1462
consensus_3056#1 AAAGAACAACGAGGTGGATCAATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATT 1474
************************************************************
consensus_3056#0 GCGATTTGCGAGGAGAATCTAAAGAGAAAGGTGCAGAGTTAAAAAGCAAAGCACACTGGC 1522
consensus_3056#1 GCGATTTGCGAGGAGAAGCTAAAGAGAAAGGTGCAGAGTTAAAAAGCAAAGCACACTGGC 1534
***************** ******************************************
consensus_3056#0 ACCTTTGCTCAGCTACCCGACACTGTCCGAATTTCTTGCTTGCTTAATATCATAATAATA 1582
consensus_3056#1 ACCTTTGCTCAG------------------------------------------------ 1546
************
consensus_3056#0 TAATTGGAGAAATACAAAAGTTTGATCTAAATAAATAGATAAATAAAGGTGGGGAAAATT 1642
consensus_3056#1 ------------------------------------------------------------
consensus_3056#0 CCGGGACATTTCACATGGTTTTTCATCCTCTGCCATCACATTTCTCTGGTTGCTTGCCGT 1702
consensus_3056#1 ------------------------------------------------------------
consensus_3056#0 CTGCTGCTGTACAGGTTTATGAAAGCTTT 1731
consensus_3056#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||