|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2344 fasta sequence
[GCCATTGCCCTCGTCCTCTTCCTCTTCCTCTTCCTCGTCGTCGTCGTCGCCGAGCCGTCGCATGGTGGACGCCGCTGCGGCCTCCGGGGACGCGTGCGGCCGCGTGACGGAGTGGGAGACCGGCCTGCCGGCTCCAGGCGAGATGACGCCGGTCTCGCACCAGCTCGTCCCGCCGGCGCTCGCCGCCGCCTTCGGGATCGACCTCGCGGCCGTGGGCGTGCTCCTCCCCTCTCCCTCCGTCGACTCCCCTGTCTCCCACCTCTTCTTCCCCGTCGACGAGGACGACGACGAGGATGAGGAGGGGGAGGGCGAGGGGGGTAACGATGACGCCCCCGCCGCCGCCGCCGCGGGCGGCGGCGGCGGGAGGTGCGGGAAGAAGGCGAGGATGGTGTGGACGCCCGAGCTGCACCACCGGTTCGTCGAGGCGGTGGCGCACCTCGGCGAGAAGGGCGCCGTGCCCAAGGCCATCGTGCGCCTCATGAACGTCGACGGCCTCACCCGCGAGAACGTCGCCAGCCACCTCCAGAAGTACCGCCTCTACCTCAAGCGCACGCGCGTCGCCGCCACGCCGCCTCCTTCTCCACCACCACCTCCTCCTCCTCCTCCGCCCCTGCCGCCGGCGATGTACGTCCCCTGCTTCGCCGCGAAACCACCTCTCGACGCAGCTAACCGCAGCGATTCCCCTCCTTCCAGAACCTCGGACGCAACGACTAAGCAGTAAGCTTTATATTTTGCAAATTTTTTTCCCCAAAAGATAGCCAAAATCAGATAGTACGTTTTTTTTCCTTTTTTTTTCTCATATTTTCGAGGATCCAAGTAGATATATTGAGTATTTAATTTCGTCAGGAATCAAGTGAAACCAATCAAAGAGGTACAATATATTGAACTCCTGTCGTCTGCAAAATCGAAATTTGGCTTACCGTCCGATGGCAAGTTGAGGGATAGTACATTTCAAGTACAGTTATGCACATATCGGGAACAAGATATAGACCACACTAAAATGCCGCTCCTTGCAAAAATTTATCAAACCATTGCATATATTAGTTTTCTCTTGGTGATAGAGTTCATTCTTTTCGGTACCAGTGTTGTCCTCCTGGCGAAAATGTTTTTAGCCACAGACATCCTTGGGCCGTTTAGCTAGAATTACTCTCTTTTTTTTTTCTCTGCGCTTGATCCGTATAGAATGTTTGTTGTTTATACTTTTGTAAATATAATACTTACTACTAGTTACGAGTACTATATTATATTAAAAAAAACTTAACGTTTACATGTCTTCCTTCTTTCTTCTGTAACTTAAAAGCCAACTTTTATGTTTGGCATACATATCCATTGTTGTCGCAACCAAAATTCATTAGTTAGATAGCAAAATATAGTAGTTTCTGTTTTCAGTAACGCGATGATAGACTATTGAAAGCAACTTTATGCTCACACCACCTTCCCTTTAAGAGCAATTTAGGTATTTAAGTTCTTTGAAGGAACTGCTGTAATGATACCCAGTTGATGATTGAATGGTGGTGGGGTTATCTGTAATGTGCTTCCTTGAATCAGAAGACTTGGGTATATGGTTAGGAGTACTTCCCTCCCTTGCCACCACCTTGATGTTGAAATGGACTGCCCATTTCAATGATTATTTGATGCTTTCTGGGGCAATCAATCATTGTTAGAGGAATTATTTGTTCCTAGCATGATTTATACTTTAATATAATTAATATTAGTAAAGGTCAGCACTATGTTAATTCCATGGTTTGGGGGTTCTGGCTTCTAGCAGTATTCCCCACATTCATGGAGCTAGCAAAGGCATATGTCTAACCTTTTACTATGTGTGTTCACTCTTAATAGTTGATACAGTTTCTGAATTGTTTCCTCGTTTTATTCTAACTGGTTAGCTAGCTCAAGGCTAGAGAAGGAAATGCACCAAGAGTGAATTATATTCAGAAGTTGTGTCTCTTAAGAATTAGGGGACAGAACATACAATATTTTTGGATCATTTCAAGTGCATGCTTTCCATGCATGCTCCCATCAAAAGGGATAACGAGACTTGTCCACGAGGCTACGACGCAAAACTCGGCTAAAATAAATATGGAAATGCTGCTCATATCCAAGAACGGCCTCAGGAAAGATGCAAAGTTTTTTTCTGTGTGAGCTGCTAATGCTCGAGGTATTGTCTGAAGGCTACAGGCACAATAAGGTTTACCAAAGGAATTGTAATTAGGTTTCCTCTGATCTAGATTCAGTTTCAAATTCATGCAGCGTGCTGTATCAAATGCTGCCTAGATGTAACATCATTTTTCCTCATCATGTATGTGTAAGATGCTACTCTTTCTAACCTGGTGACATCGGCAAA]
[+] EMBL AK066659 [GCCATTGCCCTCGTCCTCTTCCTCTTCCTCTTCCTCGTCGTCGTCGTCGCCGAGCCGTCGCATGGTGGACGCCGCTGCGGCCTCCGGGGACGCGTGCGGCCGCGTGACGGAGTGGGAGACCGGCCTGCCGGCTCCAGGCGAGATGACGCCGGTCTCGCACCAGCTCGTCCCGCCGGCGCTCGCCGCCGCCTTCGGGATCGACCTCGCGGCCGTGGGCGTGCTCCTCCCCTCTCCCTCCGTCGACTCCCCTGTCTCCCACCTCTTCTTCCCCGTCGACGAGGACGACGACGAGGATGAGGAGGGGGAGGGCGAGGGGGGTAACGATGACGCCCCCGCCGCCGCCGCCGCGGGCGGCGGCGGCGGGAGGTGCGGGAAGAAGGCGAGGATGGTGTGGACGCCCGAGCTGCACCACCGGTTCGTCGAGGCGGTGGCGCACCTCGGCGAGAAGGGCGCCGTGCCCAAGGCCATCGTGCGCCTCATGAACGTCGACGGCCTCACCCGCGAGAACGTCGCCAGCCACCTCCAGAAGTACCGCCTCTACCTCAAGCGCACGCGCGTCGCCGCCACGCCGCCTCCTTCTCCACCACCACCTCCTCCTCCTCCTCCGCCCCTGCCGCCGGCGATGTACGTCCCCTGCTTCGCCGCGAAACCACCTCTCGACGCAGCTAACCGCAGCGATTCCCCTCCTTCCAGAACCTCGGACGCAACGACTAAGCAGTAAGCTTTATATTTTGCAAATTTTTTTCCCCAAAAGATAGCCAAAATCAGATAGTACGTTTTTTTTCCTTTTTTTTTCTCATATTTTCGAGGATCCAAGTAGATATATTGAGTATTTAATTTCGTCAGGAATCAAGTGAAACCAATCAAAGAGGTACAATATATTGAACTCCTGTCGTCTGCAAAATCGAAATTTGGCTTACCGTCCGATGGCAAGTTGAGGGATAGTACATTTCAAGTACAGTTATGCACATATCGGGAACAAGATATAGACCACACTAAAATGCCGCTCCTTGCAAAAATTTATCAAACCATTGCATATATTAGTTTTCTCTTGGTGATAGAGTTCATTCTTTTCGGTACCAGTGTTGTCCTCCTGGCGAAAATGTTTTTAGCCACAGACATCCTTGGGCCGTTTAGCTAGAATTACTCTCTTTTTTTTTTCTCTGCGCTTGATCCGTATAGAATGTTTGTTGTTTATACTTTTGTAAATATAATACTTACTACTAGTTACGAGTACTATATTATATTAAAAAAAACTTAACGTTTACATGTCTTCCTTCTTTCTTCTGTAACTTAAAAGCCAACTTTTATGTTTGGCATACATATCCATTGTTGTCGCAACCAAAATTCATTAGTTAGATAGCAAAATATAGTAGTTTCTGTTTTCAGTAACGCGATGATAGACTATTGAAAGCAACTTTATGCTCACACCACCTTCCCTTTAAGAGCAATTTAGGTATTTAAGTTCTTTGAAGGAACTGCTGTAATGATACCCAGTTGATGATTGAATGGTGGTGGGGTTATCTGTAATGTGCTTCCTTGAATCAGAAGACTTGGGTATATGGTTAGGAGTACTTCCCTCCCTTGCCACCACCTTGATGTTGAAATGGACTGCCCATTTCAATGATTATTTGATGCTTTCTGGGGCAATCAATCATTGTTAGAGGAATTATTTGTTCCTAGCATGATTTATACTTTAATATAATTAATATTAGTAAAGGTCAGCACTATGTTAATTCCATGGTTTGGGGGTTCTGGCTTCTAGCAGTATTCCCCACATTCATGGAGCTAGCAAAGGCATATGTCTAACCTTTTACTATGTGTGTTCACTCTTAATAGTTGATACAGTTTCTGAATTGTTTCCTCGTTTTATTCTAACTGGTTAGCTAGCTCAAGGCTAGAGAAGGAAATGCACCAAGAGTGAATTATATTCAGAAGTTGTGTCTCTTAAGAATTAGGGGACAGAACATACAATATTTTTGGATCATTTCAAGTGCATGCTTTCCATGCATGCTCCCATCAAAAGGGATAACGAGACTTGTCCACGAGGCTACGACGCAAAACTCGGCTAAAATAAATATGGAAATGCTGCTCATATCCAAGAACGGCCTCAGGAAAGATGCAAAGTTTTTTTCTGTGTGAGCTGCTAATGCTCGAGGTATTGTCTGAAGGCTACAGGCACAATAAGGTTTACCAAAGGAATTGTAATTAGGTTTCCTCTGATCTAGATTCAGTTTCAAATTCATGCAGCGTGCTGTATCAAATGCTGCCTAGATGTAACATCATTTTTCCTCATCATGTATGTGTAAGATGCTACTCTTTCTAACCTGGTGACATCGGCAAA]
consensusID : consensus_3066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence
[TGTACGGCCCCTCTTCGCCGCGAAACCACCTCTCGACGCAGCTAACCGCAGCGATTCCCCTCCTTCCAGAACCTCGGACGCAACGACTAAGCAGTAAGCTTTATATTTTGCAAATTTTTTTCCCCAAAAGATAGCCAAAATCAGATAGTACGTTTTTTTTCCTTTTTTTTTCTCATATTTTCGAGGATCCAAGTAGATATATTGAGTATTTAATTTCGTCAGGAATCAAGTGAAACCAATCAAAGAGGTACAATATATTGAACTCCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU082886 [TGTACGGCCCCTCTTCGCCGCGAAACCACCTCTCGACGCAGCTAACCGCAGCGATTCCCCTCCTTCCAGAACCTCGGACGCAACGACTAAGCAGTAAGCTTTATATTTTGCAAATTTTTTTCCCCAAAAGATAGCCAAAATCAGATAGTACGTTTTTTTTCCTTTTTTTTTCTCATATTTTCGAGGATCCAAGTAGATATATTGAGTATTTAATTTCGTCAGGAATCAAGTGAAACCAATCAAAGAGGTACAATATATTGAACTCCAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3066#0 GCCATTGCCCTCGTCCTCTTCCTCTTCCTCTTCCTCGTCGTCGTCGTCGCCGAGCCGTCG 60
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 CATGGTGGACGCCGCTGCGGCCTCCGGGGACGCGTGCGGCCGCGTGACGGAGTGGGAGAC 120
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 CGGCCTGCCGGCTCCAGGCGAGATGACGCCGGTCTCGCACCAGCTCGTCCCGCCGGCGCT 180
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 CGCCGCCGCCTTCGGGATCGACCTCGCGGCCGTGGGCGTGCTCCTCCCCTCTCCCTCCGT 240
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 CGACTCCCCTGTCTCCCACCTCTTCTTCCCCGTCGACGAGGACGACGACGAGGATGAGGA 300
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 GGGGGAGGGCGAGGGGGGTAACGATGACGCCCCCGCCGCCGCCGCCGCGGGCGGCGGCGG 360
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 CGGGAGGTGCGGGAAGAAGGCGAGGATGGTGTGGACGCCCGAGCTGCACCACCGGTTCGT 420
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 CGAGGCGGTGGCGCACCTCGGCGAGAAGGGCGCCGTGCCCAAGGCCATCGTGCGCCTCAT 480
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 GAACGTCGACGGCCTCACCCGCGAGAACGTCGCCAGCCACCTCCAGAAGTACCGCCTCTA 540
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 CCTCAAGCGCACGCGCGTCGCCGCCACGCCGCCTCCTTCTCCACCACCACCTCCTCCTCC 600
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 TCCTCCGCCCCTGCCGCCGGCGATGTACGTCCCCTGCTTCGCCGCGAAACCACCTCTCGA 660
consensus_3066#1 -----------------------TGTACGGCCCCT-CTTCGCCGCGAAACCACCTCTCGA 36
****** ***** ************************
consensus_3066#0 CGCAGCTAACCGCAGCGATTCCCCTCCTTCCAGAACCTCGGACGCAACGACTAAGCAGTA 720
consensus_3066#1 CGCAGCTAACCGCAGCGATTCCCCTCCTTCCAGAACCTCGGACGCAACGACTAAGCAGTA 96
************************************************************
consensus_3066#0 AGCTTTATATTTTGCAAATTTTTTTCCCCAAAAGATAGCCAAAATCAGATAGTACGTTTT 780
consensus_3066#1 AGCTTTATATTTTGCAAATTTTTTTCCCCAAAAGATAGCCAAAATCAGATAGTACGTTTT 156
************************************************************
consensus_3066#0 TTTTCCTTTTTTTTTCTCATATTTTCGAGGATCCAAGTAGATATATTGAGTATTTAATTT 840
consensus_3066#1 TTTTCCTTTTTTTTTCTCATATTTTCGAGGATCCAAGTAGATATATTGAGTATTTAATTT 216
************************************************************
consensus_3066#0 CGTCAGGAATCAAGTGAAACCAATCAAAGAGGTACAATATATTGAACTCCTGTCGTCTGC 900
consensus_3066#1 CGTCAGGAATCAAGTGAAACCAATCAAAGAGGTACAATATATTGAACTCCAAAAAAAAAA 276
**************************************************
consensus_3066#0 AAAATCGAAATTTGGCTTACCGTCCGATGGCAAGTTGAGGGATAGTACATTTCAAGTACA 960
consensus_3066#1 AAAAAAAAAAAAA----------------------------------------------- 289
**** ***
consensus_3066#0 GTTATGCACATATCGGGAACAAGATATAGACCACACTAAAATGCCGCTCCTTGCAAAAAT 1020
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 TTATCAAACCATTGCATATATTAGTTTTCTCTTGGTGATAGAGTTCATTCTTTTCGGTAC 1080
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 CAGTGTTGTCCTCCTGGCGAAAATGTTTTTAGCCACAGACATCCTTGGGCCGTTTAGCTA 1140
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 GAATTACTCTCTTTTTTTTTTCTCTGCGCTTGATCCGTATAGAATGTTTGTTGTTTATAC 1200
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 TTTTGTAAATATAATACTTACTACTAGTTACGAGTACTATATTATATTAAAAAAAACTTA 1260
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 ACGTTTACATGTCTTCCTTCTTTCTTCTGTAACTTAAAAGCCAACTTTTATGTTTGGCAT 1320
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 ACATATCCATTGTTGTCGCAACCAAAATTCATTAGTTAGATAGCAAAATATAGTAGTTTC 1380
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 TGTTTTCAGTAACGCGATGATAGACTATTGAAAGCAACTTTATGCTCACACCACCTTCCC 1440
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 TTTAAGAGCAATTTAGGTATTTAAGTTCTTTGAAGGAACTGCTGTAATGATACCCAGTTG 1500
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 ATGATTGAATGGTGGTGGGGTTATCTGTAATGTGCTTCCTTGAATCAGAAGACTTGGGTA 1560
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 TATGGTTAGGAGTACTTCCCTCCCTTGCCACCACCTTGATGTTGAAATGGACTGCCCATT 1620
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 TCAATGATTATTTGATGCTTTCTGGGGCAATCAATCATTGTTAGAGGAATTATTTGTTCC 1680
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 TAGCATGATTTATACTTTAATATAATTAATATTAGTAAAGGTCAGCACTATGTTAATTCC 1740
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 ATGGTTTGGGGGTTCTGGCTTCTAGCAGTATTCCCCACATTCATGGAGCTAGCAAAGGCA 1800
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 TATGTCTAACCTTTTACTATGTGTGTTCACTCTTAATAGTTGATACAGTTTCTGAATTGT 1860
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 TTCCTCGTTTTATTCTAACTGGTTAGCTAGCTCAAGGCTAGAGAAGGAAATGCACCAAGA 1920
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 GTGAATTATATTCAGAAGTTGTGTCTCTTAAGAATTAGGGGACAGAACATACAATATTTT 1980
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 TGGATCATTTCAAGTGCATGCTTTCCATGCATGCTCCCATCAAAAGGGATAACGAGACTT 2040
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 GTCCACGAGGCTACGACGCAAAACTCGGCTAAAATAAATATGGAAATGCTGCTCATATCC 2100
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 AAGAACGGCCTCAGGAAAGATGCAAAGTTTTTTTCTGTGTGAGCTGCTAATGCTCGAGGT 2160
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 ATTGTCTGAAGGCTACAGGCACAATAAGGTTTACCAAAGGAATTGTAATTAGGTTTCCTC 2220
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 TGATCTAGATTCAGTTTCAAATTCATGCAGCGTGCTGTATCAAATGCTGCCTAGATGTAA 2280
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 CATCATTTTTCCTCATCATGTATGTGTAAGATGCTACTCTTTCTAACCTGGTGACATCGG 2340
consensus_3066#1 ------------------------------------------------------------
consensus_3066#0 CAAA 2344
consensus_3066#1 ----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||