These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [TTTTTTTTTTTTTTTTTTTTCAAAAAAAATTAGAGTATTAGATCGAAATTTCTAAAGAAGGGGCAGGATAAAACAGGGAACCTAAAAACAACTCAAATTCAAAACAAAGGTCCAGTAAACAATGCAAGAAAGAATTTTACAAGAGACCATCAAAGAGTATATATGCACTTCCCTTGCACTATCAGGGGGCTTGACCGCTCGATCTGGGGGGGGGGGCTATCGCACAACGGTTGGGGAAAGGATGACAACTTCAGTTGCAAACGGGGGCACCCTCAGCCTCCACTGTTTATGCCCAGAATTCTCAAATCTCAAAGCGTTGCGAGCTGAGGCTGGGAAAAACCCGGTTTCCGTTGCCTGGGACATCTAACTGCCTAAATAATCAAAAATTTCGGACTGTAGTCTGTACCGACAAAGGAAATAGGGGGTACCATCAAAACAGTAAAAACAAACTTGCTTGGATTCAAAGCCTCAAACTGCTTTTCATCTTGCAAAATAGTTGGAATATTCTTAAAATAAAGACCATTAATTTGAATGTCATGATCTTAGAGGGCACATTTGATGTAGGCATAAAGTATTCGGTTAATATATTAAGCCGAAGGGTTAAAGTGTTTTTTTGGGACCATTTCAGAGCACCACGGGATTGTAGGATTCACCGCAAAGGGCTCCCTATTAGTTCATATGGT] [+] EMBL CA761908 [TTTTTTTTTTTTTTTTTTTTCAAAAAAAATTAGAGTATTAGATCGAAATTTCTAAAGAAGGGGCAGGATAAAACAGGGAACCTAAAAACAACTCAAATTCAAAACAAAGGTCCAGTAAACAATGCAAGAAAGAATTTTACAAGAGACCATCAAAGAGTATATATGCACTTCCCTTGCACTATCAGGGGGCTTGACCGCTCGATCTGGGGGGGGGGGCTATCGCACAACGGTTGGGGAAAGGATGACAACTTCAGTTGCAAACGGGGGCACCCTCAGCCTCCACTGTTTATGCCCAGAATTCTCAAATCTCAAAGCGTTGCGAGCTGAGGCTGGGAAAAACCCGGTTTCCGTTGCCTGGGACATCTAACTGCCTAAATAATCAAAAATTTCGGACTGTAGTCTGTACCGACAAAGGAAATAGGGGGTACCATCAAAACAGTAAAAACAAACTTGCTTGGATTCAAAGCCTCAAACTGCTTTTCATCTTGCAAAATAGTTGGAATATTCTTAAAATAAAGACCATTAATTTGAATGTCATGATCTTAGAGGGCACATTTGATGTAGGCATAAAGTATTCGGTTAATATATTAAGCCGAAGGGTTAAAGTGTTTTTTTGGGACCATTTCAGAGCACCACGGGATTGTAGGATTCACCGCAAAGGGCTCCCTATTAGTTCATATGGT] consensusID : consensus_3073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [TTTTTTTCGATACAAAATATGCATTATTAACTGTCTTCATATATCAAATGTTATCTTACGTGGCAATGTGACCAAAGTTACGGATCACATCAATTACCATATTTAGCATTACAAAACAAAGCTAGAAATGATTTGGTTTTACATAATCATTCGATATGATTTTTGGGCTAGTAAAAAACTATGCTAACAGAATATGACAACACCAAGTCAACAGGCCCGTAGGATGTTAGTTAAATTCACAGTTGCAGCTTGAGGCCAATCTCGCCAATGAATACACGGTAGATCACTTGGAGCTCAGCCTCAGTGGCAGTTCCAACACCGTCACTCCTCAACAGGTGCCCCAAGTAACAATAGGATTCAAAATAAATTAGAGTATTAGATCGAAATTTCTAAAGAAAGTGCAGGATAAAACAAGGAACCTAAAAACAACTCAGATTCAAGACGAATGTACAGTAGACAATGCAAGAAAGAAATTTACAAGAGACCATCAGAGAGTATATATGCACTTCCCTTGCACTATCA] [-] EMBL BI805083 [TTTTTTTCGATACAAAATATGCATTATTAACTGTCTTCATATATCAAATGTTATCTTACGTGGCAATGTGACCAAAGTTACGGATCACATCAATTACCATATTTAGCATTACAAAACAAAGCTAGAAATGATTTGGTTTTACATAATCATTCGATATGATTTTTGGGCTAGTAAAAAACTATGCTAACAGAATATGACAACACCAAGTCAACAGGCCCGTAGGATGTTAGTTAAATTCACAGTTGCAGCTTGAGGCCAATCTCGCCAATGAATACACGGTAGATCACTTGGAGCTCAGCCTCAGTGGCAGTTCCAACACCGTCACTCCTCAACAGGTGCCCCAAGTAACAATAGGATTCAAAATAAATTAGAGTATTAGATCGAAATTTCTAAAGAAAGTGCAGGATAAAACAAGGAACCTAAAAACAACTCAGATTCAAGACGAATGTACAGTAGACAATGCAAGAAAGAAATTTACAAGAGACCATCAGAGAGTATATATGCACTTCCCTTGCACTATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3073#0 -TTTTTTTTTTTTTTTTTTTTCAAAAAAAATTAGAGTATTAGATCGAAATTTCTAAAGAA 59 consensus_3073#1 TTTTTTTCGATACAAAATATGCATTATTAACTGTCTTCATATATC-AAATGTTATCTTAC 59 ****** * * * ** * ** * * ** *** **** * * consensus_3073#0 GGGGCAGGATAAAACAGGGAACCTAAAAACAACTCAAATTCAAAACAAAGGTCCAGTAAA 119 consensus_3073#1 GTGGCAATGTGACCAAAGTTAC---GGATCACATCAATTACCATATTTAGCATTACAAAA 116 * **** * * * * ** * ** **** * * * * ** * *** consensus_3073#0 CAATGCAAGAAAGAATTTTACAAGAGACCATCAAAGAGTATATATGCACTTCCCTTGCAC 179 consensus_3073#1 CAAAGCTAGAAATGATTTGGTTTTACATAATCATTCGATATG-----ATTT---TTGGGC 168 *** ** ***** **** * * **** *** * ** *** * consensus_3073#0 TATCAGGGGGCTTGACCGCTCGATCTGGGGGGGGGGGCTATCGCACAACGGTTGGGGAAA 239 consensus_3073#1 TAGTAAAAAACTATGCTAACAGAATATGACAACACCAAGTCAACAGGCCCGTAGGATGTT 228 ** * ** * ** * ** * ** ** consensus_3073#0 GGATGACAACTTCAGTTGCAAACGGGGGCACCCTCAGCCTCCACTGTTTATGCC-CAGAA 298 consensus_3073#1 AGTTAA-ATTCACAGTTGCAGCTTGAGGC-CAATC--TCGCCAATGAATACACGGTAGAT 284 * * * * ******** * *** * ** * *** ** ** * *** consensus_3073#0 TTCTCAAATCTCAAAGCGTTGCGAGCTGAGGCTGGGAAAAACCCGGTTTCCGTTGCCTGG 358 consensus_3073#1 CACTTGGAGCTCA--GCCTC---AGTGGCAGTTCCAACACCGTCACTCCTCAACAGGTGC 339 ** * **** ** * ** * * * * * * * * ** consensus_3073#0 GACATCTAACTGCCTAAATAATCAAAAATTTCGGACTGTAGTCTGTACCGACAAAGGAAA 418 consensus_3073#1 CCCAAGTAACAATAGGATTCAAAATAAATTAGAGTATTAGATCGAAATTTCTAAAGAAAG 399 ** **** * * * * ***** * * ** * **** ** consensus_3073#0 TAGGGGGTACCATCAAAACAGTAAAAACAAACTTGCTTGGATTCAAAGCCTCAAACTGCT 478 consensus_3073#1 TGCAGGATAAAACAAGGAACCTAAAAACAA-----CTCAGATTCAAGAC--GAATGTACA 452 * ** ** * * * ********* ** ******* * ** * * consensus_3073#0 TTTCATCTTGCAAAATAGTTGGAATATTCTTAAAATAAAGACCATTAATTTGAATGTCAT 538 consensus_3073#1 GTAGACAATGCAAGAAAG-----AAATTTACAAGA----GACCATCAGAGAGTATAT-AT 502 * * ***** * ** * *** ** * ****** * * ** * ** consensus_3073#0 GATCTTAGAGGGCACATTTGATGTAGGCATAAAGTATTCGGTTAATATATTAAGCCGAAG 598 consensus_3073#1 GCACTTCCCTTGCACTATCA---------------------------------------- 522 * *** **** * consensus_3073#0 GGTTAAAGTGTTTTTTTGGGACCATTTCAGAGCACCACGGGATTGTAGGATTCACCGCAA 658 consensus_3073#1 ------------------------------------------------------------ consensus_3073#0 AGGGCTCCCTATTAGTTCATATGGT 683 consensus_3073#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||