These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1982 fasta sequence [TCCAATCCTACGGTGCAAGTCTGGCCGATCTCACCGCGCGCGCGCCGCCTCCTCCCCCTTGAGTCGGCGCCGCCTCCAATCCGACGCCGGCTTCCCCCTCCGTCCGCCGCCACCTTCTTCCCCGTTCCGCTCCCCCGGGGAAACTTCGCCCTCTTCACCCTCCCCCAACTACTCCTGCCTCCACCCCCAAGGCCCCAACCACCGAACCCTAGCTGGCCGGCGCCGTCGTCACCGCCCCCGGGAGATCGTCGGAGCCCGGAGACGAGGAAGAAGCTGTCTGCCGCGCGGTCGTACTCGTATCGTGAAGCATACATATCGTCAGAGTTACCAATGGCTACAGAAAAGAAAGTGAACAAGCTATCTGTGGCTAATTTAACTTCGGATGATTCATTCTATCCAGTTATAGTTCCTGGAAACTCTAAGATTGAGATACAAAGCCGAGTCAGAAACTTGACTGTTTATGCTATCAAAATTCCTGGCAGCGTGGCATATAATGCTATGTTGTTATATTCAGAGGGTCAACAAGAGAAATGTCTAGCAGTACGACGAAGATCAGAACACGCCCATACTCTTTATGAAATCCTTCGAAATTGCTCTCACAGAAACATCATACAGCCTATGGGAGTCTGGGAAGAAATGGAGACGAACCTGGCATTTATTGTTTTCCCTTGCTCTGATGGAGTTGTGACTTCAATTCCAAAAGAAGCTTTATTTGATGTGGAAGATGCTACAAATGCTGAATCTTATACATTTGGTTTCAGTGACCAAGGTTGCAGGATCTTTAGAGAGATTTGTATGGCAGTCAGATATATCAATGTGCTGTATGACGAGGAGAAAATTCCATTGAAGGCACTGGATTTGGATGAAAGTAAAATCTTTTATCAGTCGAAGGCTAAGGGGGATTATCATGTCCTATTAACTGACATCAAGATGGAAATTTCACCAACGGGCAATGTGAGAAAGAACCGGAGAGCCAAGGGCAAAGTTTCTAGCACAGGAGTACCAACTGTTGATGACGTTAAAACTGCGAACTGGAATGGTTTGGGACAATTTCTTAAAAAGCTCCATAAAGACCTCAAGCTGCACATAGAATTGAGCCATCTTTCAGAAGAGCTCGGGAAAGAATCAGTAAAGTATGAAGATTTGGTGTGGGAACCTGGATTGTGGGAATCAAGCACTAAAGTGCAATTGGTTAGAGATGTTTATTGGTGCTACAACAAAAACAAGAACAGAATATCTACACTTAAGAACAAAACAGCCCTTGGACTCAAAAGCTTTATTGACAAGTTGGAGGTGAACAAGTCTAGAGCACCAGACAAACAAATCAATGACGACAACTTGTATGAGTCTCTGTTTTTTCTTAGAGTTTACATGGTTGCCCACAAAGACGATACTATTAAAGGTTACAGTGGCACAATGGAAATGATGCATGACAAGAAAGCCATTGTAAGGTTGCTTATGATAGAACGCCCTGAATACATGGTGACACTCATTTCAGCAATACGGAAGTTAGGCTGGATTAGGCAATCTCCATTTTGCGCATGGATAACCAGTACATGATAGAGTTTTACACCCCAAATCCTGCAAAGTGCTTGCTATCTCTTAGGAGGATTGGGATCCCATGCAGTTTGAACAGGGACTGCAAGTTTAGCAGTCTTAGGTATTCACTACCATCAGATCAAAGGTTTCAATGGCCCGGATTTAGTAGCAGTACTGTTTGTTAGCACTTGCTACAGTATGTGCTACAGGATTCATCTGCTACAGTACCTGATGAACAGTATTTTTGTGTGATCTGAGTCCTTGTTATTTGATCCAACAATGATTGTATGACTTGCTGAGGAAAAAAAATTGGTAGATGGCAAAGTTTCAACATGCATCTTGCAGTAGCTACATGGAGGTTGTACTTCTTAGTTACTCCCTCCGTTTCATAATGTAATACTGTCCACATTCATATAGATGTTAATAAATATAAACACATATAT] [+] EMBL AK070622 [TCCAATCCTACGGTGCAAGTCTGGCCGATCTCACCGCGCGCGCGCCGCCTCCTCCCCCTTGAGTCGGCGCCGCCTCCAATCCGACGCCGGCTTCCCCCTCCGTCCGCCGCCACCTTCTTCCCCGTTCCGCTCCCCCGGGGAAACTTCGCCCTCTTCACCCTCCCCCAACTACTCCTGCCTCCACCCCCAAGGCCCCAACCACCGAACCCTAGCTGGCCGGCGCCGTCGTCACCGCCCCCGGGAGATCGTCGGAGCCCGGAGACGAGGAAGAAGCTGTCTGCCGCGCGGTCGTACTCGTATCGTGAAGCATACATATCGTCAGAGTTACCAATGGCTACAGAAAAGAAAGTGAACAAGCTATCTGTGGCTAATTTAACTTCGGATGATTCATTCTATCCAGTTATAGTTCCTGGAAACTCTAAGATTGAGATACAAAGCCGAGTCAGAAACTTGACTGTTTATGCTATCAAAATTCCTGGCAGCGTGGCATATAATGCTATGTTGTTATATTCAGAGGGTCAACAAGAGAAATGTCTAGCAGTACGACGAAGATCAGAACACGCCCATACTCTTTATGAAATCCTTCGAAATTGCTCTCACAGAAACATCATACAGCCTATGGGAGTCTGGGAAGAAATGGAGACGAACCTGGCATTTATTGTTTTCCCTTGCTCTGATGGAGTTGTGACTTCAATTCCAAAAGAAGCTTTATTTGATGTGGAAGATGCTACAAATGCTGAATCTTATACATTTGGTTTCAGTGACCAAGGTTGCAGGATCTTTAGAGAGATTTGTATGGCAGTCAGATATATCAATGTGCTGTATGACGAGGAGAAAATTCCATTGAAGGCACTGGATTTGGATGAAAGTAAAATCTTTTATCAGTCGAAGGCTAAGGGGGATTATCATGTCCTATTAACTGACATCAAGATGGAAATTTCACCAACGGGCAATGTGAGAAAGAACCGGAGAGCCAAGGGCAAAGTTTCTAGCACAGGAGTACCAACTGTTGATGACGTTAAAACTGCGAACTGGAATGGTTTGGGACAATTTCTTAAAAAGCTCCATAAAGACCTCAAGCTGCACATAGAATTGAGCCATCTTTCAGAAGAGCTCGGGAAAGAATCAGTAAAGTATGAAGATTTGGTGTGGGAACCTGGATTGTGGGAATCAAGCACTAAAGTGCAATTGGTTAGAGATGTTTATTGGTGCTACAACAAAAACAAGAACAGAATATCTACACTTAAGAACAAAACAGCCCTTGGACTCAAAAGCTTTATTGACAAGTTGGAGGTGAACAAGTCTAGAGCACCAGACAAACAAATCAATGACGACAACTTGTATGAGTCTCTGTTTTTTCTTAGAGTTTACATGGTTGCCCACAAAGACGATACTATTAAAGGTTACAGTGGCACAATGGAAATGATGCATGACAAGAAAGCCATTGTAAGGTTGCTTATGATAGAACGCCCTGAATACATGGTGACACTCATTTCAGCAATACGGAAGTTAGGCTGGATTAGGCAATCTCCATTTTGCGCATGGATAACCAGTACATGATAGAGTTTTACACCCCAAATCCTGCAAAGTGCTTGCTATCTCTTAGGAGGATTGGGATCCCATGCAGTTTGAACAGGGACTGCAAGTTTAGCAGTCTTAGGTATTCACTACCATCAGATCAAAGGTTTCAATGGCCCGGATTTAGTAGCAGTACTGTTTGTTAGCACTTGCTACAGTATGTGCTACAGGATTCATCTGCTACAGTACCTGATGAACAGTATTTTTGTGTGATCTGAGTCCTTGTTATTTGATCCAACAATGATTGTATGACTTGCTGAGGAAAAAAAATTGGTAGATGGCAAAGTTTCAACATGCATCTTGCAGTAGCTACATGGAGGTTGTACTTCTTAGTTACTCCCTCCGTTTCATAATGTAATACTGTCCACATTCATATAGATGTTAATAAATATAAACACATATAT] consensusID : consensus_310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [CACTTGCCTGGATAAGCCATAACCCCGTAAGGCGTCGCTAGAATCCGGAATTGGGAATNCCCACGCAGTTTTGAACATGGACTGCAAAATTAGCAGTCTTAGGTCTTCAATACCATCGGATCGAAGATTTCAACGGCCATGATTTAGTACCAGTACTGTTTGTTATCACTTGCTACAGTACGCGCTACAGGATTCATCTGCTACAGTATCTGATGAACAGTACTTTTGTGTGATTTGAGCCCTTGATATTTGATCCAACAATGGTTGTATGACTGCGAAAGTTGCAGTCATANACAACTGCAGGTGATCTCAATTCCGCTAGATCCATTTGATCGATGNTCGGTGCACNTGGCCCCCCTCCCAATCATCGATCCAGTCCCATACACACGGTCACGTACACACGAACGCA] [-] EMBL AU031267 [CACTTGCCTGGATAAGCCATAACCCCGTAAGGCGTCGCTAGAATCCGGAATTGGGAATNCCCACGCAGTTTTGAACATGGACTGCAAAATTAGCAGTCTTAGGTCTTCAATACCATCGGATCGAAGATTTCAACGGCCATGATTTAGTACCAGTACTGTTTGTTATCACTTGCTACAGTACGCGCTACAGGATTCATCTGCTACAGTATCTGATGAACAGTACTTTTGTGTGATTTGAGCCCTTGATATTTGATCCAACAATGGTTGTATGACTGCGAAAGTTGCAGTCATANACAACTGCAGGTGATCTCAATTCCGCTAGATCCATTTGATCGATGNTCGGTGCACNTGGCCCCCCTCCCAATCATCGATCCAGTCCCATACACACGGTCACGTACACACGAACGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_310#0 TCCAATCCTACGGTGCAAGTCTGGCCGATCTCACCGCGCGCGCGCCGCCTCCTCCCCCTT 60 consensus_310#1 ------------------------------------------------------------ consensus_310#0 GAGTCGGCGCCGCCTCCAATCCGACGCCGGCTTCCCCCTCCGTCCGCCGCCACCTTCTTC 120 consensus_310#1 ------------------------------------------------------------ consensus_310#0 CCCGTTCCGCTCCCCCGGGGAAACTTCGCCCTCTTCACCCTCCCCCAACTACTCCTGCCT 180 consensus_310#1 ------------------------------------------------------------ consensus_310#0 CCACCCCCAAGGCCCCAACCACCGAACCCTAGCTGGCCGGCGCCGTCGTCACCGCCCCCG 240 consensus_310#1 ------------------------------------------------------------ consensus_310#0 GGAGATCGTCGGAGCCCGGAGACGAGGAAGAAGCTGTCTGCCGCGCGGTCGTACTCGTAT 300 consensus_310#1 ------------------------------------------------------------ consensus_310#0 CGTGAAGCATACATATCGTCAGAGTTACCAATGGCTACAGAAAAGAAAGTGAACAAGCTA 360 consensus_310#1 ------------------------------------------------------------ consensus_310#0 TCTGTGGCTAATTTAACTTCGGATGATTCATTCTATCCAGTTATAGTTCCTGGAAACTCT 420 consensus_310#1 ------------------------------------------------------------ consensus_310#0 AAGATTGAGATACAAAGCCGAGTCAGAAACTTGACTGTTTATGCTATCAAAATTCCTGGC 480 consensus_310#1 ------------------------------------------------------------ consensus_310#0 AGCGTGGCATATAATGCTATGTTGTTATATTCAGAGGGTCAACAAGAGAAATGTCTAGCA 540 consensus_310#1 ------------------------------------------------------------ consensus_310#0 GTACGACGAAGATCAGAACACGCCCATACTCTTTATGAAATCCTTCGAAATTGCTCTCAC 600 consensus_310#1 ------------------------------------------------------------ consensus_310#0 AGAAACATCATACAGCCTATGGGAGTCTGGGAAGAAATGGAGACGAACCTGGCATTTATT 660 consensus_310#1 ------------------------------------------------------------ consensus_310#0 GTTTTCCCTTGCTCTGATGGAGTTGTGACTTCAATTCCAAAAGAAGCTTTATTTGATGTG 720 consensus_310#1 ------------------------------------------------------------ consensus_310#0 GAAGATGCTACAAATGCTGAATCTTATACATTTGGTTTCAGTGACCAAGGTTGCAGGATC 780 consensus_310#1 ------------------------------------------------------------ consensus_310#0 TTTAGAGAGATTTGTATGGCAGTCAGATATATCAATGTGCTGTATGACGAGGAGAAAATT 840 consensus_310#1 ------------------------------------------------------------ consensus_310#0 CCATTGAAGGCACTGGATTTGGATGAAAGTAAAATCTTTTATCAGTCGAAGGCTAAGGGG 900 consensus_310#1 ------------------------------------------------------------ consensus_310#0 GATTATCATGTCCTATTAACTGACATCAAGATGGAAATTTCACCAACGGGCAATGTGAGA 960 consensus_310#1 ------------------------------------------------------------ consensus_310#0 AAGAACCGGAGAGCCAAGGGCAAAGTTTCTAGCACAGGAGTACCAACTGTTGATGACGTT 1020 consensus_310#1 ------------------------------------------------------------ consensus_310#0 AAAACTGCGAACTGGAATGGTTTGGGACAATTTCTTAAAAAGCTCCATAAAGACCTCAAG 1080 consensus_310#1 ------------------------------------------------------------ consensus_310#0 CTGCACATAGAATTGAGCCATCTTTCAGAAGAGCTCGGGAAAGAATCAGTAAAGTATGAA 1140 consensus_310#1 ------------------------------------------------------------ consensus_310#0 GATTTGGTGTGGGAACCTGGATTGTGGGAATCAAGCACTAAAGTGCAATTGGTTAGAGAT 1200 consensus_310#1 ------------------------------------------------------------ consensus_310#0 GTTTATTGGTGCTACAACAAAAACAAGAACAGAATATCTACACTTAAGAACAAAACAGCC 1260 consensus_310#1 ------------------------------------------------------------ consensus_310#0 CTTGGACTCAAAAGCTTTATTGACAAGTTGGAGGTGAACAAGTCTAGAGCACCAGACAAA 1320 consensus_310#1 ------------------------------------------------------------ consensus_310#0 CAAATCAATGACGACAACTTGTATGAGTCTCTGTTTTTTCTTAGAGTTTACATGGTTGCC 1380 consensus_310#1 ------------------------------------------------------------ consensus_310#0 CACAAAGACGATACTATTAAAGGTTACAGTGGCACAATGGAAATGATGCATGACAAGAAA 1440 consensus_310#1 ------------------------------------------------------------ consensus_310#0 GCCATTGTAAGGTTGCTTATGATAGAACGCCCTGAATACATGGTGACACTCATTTCAGCA 1500 consensus_310#1 ------------------------------------------------------------ consensus_310#0 ATACGGAAGTTAGGCTGGATTAGGCAATCTCCATTTTGCGCATGGATAACCAGTACATGA 1560 consensus_310#1 -----------------------------------------------------CACTTGC 7 ** ** consensus_310#0 TAGAGTTTTACACCCCAAATCCTGCAAAGTGCTTGCTATCTCTTAGGAGGATTGGGA--T 1618 consensus_310#1 CTGGATA----AGCCATAACCCCGTAAGGCG-TCGCTAGAATCCGGA---ATTGGGAATN 59 * * * ** ** ** * ** * * * **** * ******* consensus_310#0 CCCATGCAGTTT-GAACAGGGACTGCAAGTTTAGCAGTCTTAGGTATTCACTACCATCAG 1677 consensus_310#1 CCCACGCAGTTTTGAACATGGACTGCAAAATTAGCAGTCTTAGGTCTTCAATACCATCGG 119 **** ******* ***** ********* *************** **** ******* * consensus_310#0 ATCAAAGGTTTCAATGGCCCGGATTTAGTAGCAGTACTGTTTGTTAGCACTTGCTACAGT 1737 consensus_310#1 ATCGAAGATTTCAACGGCCATGATTTAGTACCAGTACTGTTTGTTATCACTTGCTACAGT 179 *** *** ****** **** ********* *************** ************* consensus_310#0 ATGTGCTACAGGATTCATCTGCTACAGTACCTGATGAACAGTATTTTTGTGTGATCTGAG 1797 consensus_310#1 ACGCGCTACAGGATTCATCTGCTACAGTATCTGATGAACAGTACTTTTGTGTGATTTGAG 239 * * ************************* ************* *********** **** consensus_310#0 TCCTTGTTATTTGATCCAACAATGATTGTATGACTTGCTGAGGAAAAAAAATTGGTAGAT 1857 consensus_310#1 CCCTTGATATTTGATCCAACAATGGTTGTATGA----CTGCGAAAGTTGCAGTCATANAC 295 ***** ***************** ******** *** * ** * * ** * consensus_310#0 GGCAAAGTTTCAACATGCATCTTGCAGTAGCTACATGGAGGTTGTACTTCTTAGTTACTC 1917 consensus_310#1 AACTGCAGGT-GATCTCAATTCCGCTAGATCCATTTGATCGATGNTCGGTGCACNTGG-C 353 * * * * ** ** * * * ** * ** * * * * consensus_310#0 CCTCCGTTTCATAATGTAATACTGTCCACATTCATATAGATGTTAATAAATATAAACACA 1977 consensus_310#1 CCCCCTCCCAATCAT-CGATCCAGTCC-CATACACACGGTCAC--GTACACACGAACGCA 409 ** ** ** ** ** * **** *** ** * * ** * * *** ** consensus_310#0 TATAT 1982 consensus_310#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||