These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [NCCTCNGCCGCCCGCCTCCTCCACCGCCCACACGAGGGGCACGCGCCTCGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCCTCCTCTCCACGCGCCACCTCACCCTCCCCCTCCCCCACGCGGCGGTATAAGTACGCTCCCCTCTCCCTACCCCCAAAAACCACCAAACCCTAGCCCCCCCAACTCCGAGGCGGCGGGCNGGGGCGAGGANGGNGTGGGTGGTTTTAGGGTTTTGATCCGGAAGGAGTTCCGGGGGGCGGCGGCGGGATGAGCAGCCTTGGTGGAGCGGCTGGNGGTGCGGTCGGAGAAGCGGCCGCACCGGTTGGAAGCTTCAGNTTTTGTTCCTTTAGTTAGGGTTAATTNCGCGTTGGTAATCATGGTATAGTNTTTCTGTGTAAATTGTATCCGTTAAATTCAAAAAAACGAN] [+] EMBL AU069649 [NCCTCNGCCGCCCGCCTCCTCCACCGCCCACACGAGGGGCACGCGCCTCGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCCTCCTCTCCACGCGCCACCTCACCCTCCCCCTCCCCCACGCGGCGGTATAAGTACGCTCCCCTCTCCCTACCCCCAAAAACCACCAAACCCTAGCCCCCCCAACTCCGAGGCGGCGGGCNGGGGCGAGGANGGNGTGGGTGGTTTTAGGGTTTTGATCCGGAAGGAGTTCCGGGGGGCGGCGGCGGGATGAGCAGCCTTGGTGGAGCGGCTGGNGGTGCGGTCGGAGAAGCGGCCGCACCGGTTGGAAGCTTCAGNTTTTGTTCCTTTAGTTAGGGTTAATTNCGCGTTGGTAATCATGGTATAGTNTTTCTGTGTAAATTGTATCCGTTAAATTCAAAAAAACGAN] consensusID : consensus_3103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [CAGTGGCCGTTACCACCGCCTCCCTCCTCCCCCTCCTCTCTCCGAGTCCGAGAGCACACGCAGAGAAAGAGAGAGAGAGAGACGCGTCCCCTCGCCGCCCGCCTCCTCCACCGCCCACACGAGGGGCACGCGCCTNGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCCTCCTNTCCACGNGNCACCTCACCCTCCNGCTNCCCCACGCGGCGGTATAAGTACGNTCCCCTNTTNCCTACCCCCAAA] [+] EMBL OSC27281 [CAGTGGCCGTTACCACCGCCTCCCTCCTCCCCCTCCTCTCTCCGAGTCCGAGAGCACACGCAGAGAAAGAGAGAGAGAGAGACGCGTCCCCTCGCCGCCCGCCTCCTCCACCGCCCACACGAGGGGCACGCGCCTNGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCCTCCTNTCCACGNGNCACCTCACCCTCCNGCTNCCCCACGCGGCGGTATAAGTACGNTCCCCTNTTNCCTACCCCCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3103#0 ------------------------------------------------------------ consensus_3103#1 CAGTGGCCGTTACCACCGCCTCCCTCCTCCCCCTCCTCTCTCCGAGTCCGAGAGCACACG 60 consensus_3103#0 ---------------------------NCCTCNGCCGCCCGCCTCCTCCACCGCCCACAC 33 consensus_3103#1 CAGAGAAAGAGAGAGAGAGAGACGCGTCCCCTCGCCGCCCGCCTCCTCCACCGCCCACAC 120 ** *************************** consensus_3103#0 GAGGGGCACGCGCCTCGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCC 93 consensus_3103#1 GAGGGGCACGCGCCTNGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCC 180 *************** ******************************************** consensus_3103#0 TCCTCTCCACGCGCCACCTCACCCTCCCCCTCCCCCACGCGGCGGTATAAGTACGCTCCC 153 consensus_3103#1 TCCTNTCCACGNGNCACCTCACCCTCCNGCTNCCCCACGCGGCGGTATAAGTACGNTCCC 240 **** ****** * ************* ** *********************** **** consensus_3103#0 CTCT-CCCTACCCCCAAAAACCACCAAACCCTAGCCCCCCCAACTCCGAGGCGGCGGGCN 212 consensus_3103#1 CTNTTNCCTACCCCCAAA------------------------------------------ 258 ** * ************ consensus_3103#0 GGGGCGAGGANGGNGTGGGTGGTTTTAGGGTTTTGATCCGGAAGGAGTTCCGGGGGGCGG 272 consensus_3103#1 ------------------------------------------------------------ consensus_3103#0 CGGCGGGATGAGCAGCCTTGGTGGAGCGGCTGGNGGTGCGGTCGGAGAAGCGGCCGCACC 332 consensus_3103#1 ------------------------------------------------------------ consensus_3103#0 GGTTGGAAGCTTCAGNTTTTGTTCCTTTAGTTAGGGTTAATTNCGCGTTGGTAATCATGG 392 consensus_3103#1 ------------------------------------------------------------ consensus_3103#0 TATAGTNTTTCTGTGTAAATTGTATCCGTTAAATTCAAAAAAACGAN 439 consensus_3103#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||