cluster # 311

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Oryza sativa
cluster # 311 cluster # 311 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_311#0 length = 802 sequences # 1

consensus_311#1 length = 670 sequences # 1

consensusID : consensus_311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 802
fasta sequence

                              [AGTTGAAGACTGAGAAGTTGTCACTGAATATCGAGTCATAGCTCTTCTCTTTAATCTGTCAATATAGCACACCCAAAATACAGCAGGACCAATTGTTTCTTTTACTACACCACAGCACAAACTTACATGAAGAGGCAAAAATTAATCTACATGGTAGGTGTACACAGTGTATAAAGTGGCATACTTGTGATGCGTCGTGCACAACAAAATAGAGAGGAATAGAGGAGCAAAAACCTTGCAAGGAATCCAATACAATTTCTTGCACAACATTTAGCATCATCATGTTCTGTAATCCATCTTCTCTACAATGAGAATAAATGTTAGAAAATAATGGTATGGAGCTGAAAACAGGACCTCATATCATAGATCAGTTAAGACAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAACTCAAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATCTGGTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTACAAAACAACACCCAAATACTCACATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAGGAGCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACATGATATGCACCGTGCATAGCAAAATANGGGGAAATTGCAGGGGGCAAAGGAGGGGATCTGAAAAGAGATGAAAGANAAATTCCTGGACAACAAATATTAGCCAGTCCATCTAGCAGCATCATGGTATGTAATTCGNCTTCCCTGCATGAGAATNAAT]

[+] EMBL CA765829             [AGTTGAAGACTGAGAAGTTGTCACTGAATATCGAGTCATAGCTCTTCTCTTTAATCTGTCAATATAGCACACCCAAAATACAGCAGGACCAATTGTTTCTTTTACTACACCACAGCACAAACTTACATGAAGAGGCAAAAATTAATCTACATGGTAGGTGTACACAGTGTATAAAGTGGCATACTTGTGATGCGTCGTGCACAACAAAATAGAGAGGAATAGAGGAGCAAAAACCTTGCAAGGAATCCAATACAATTTCTTGCACAACATTTAGCATCATCATGTTCTGTAATCCATCTTCTCTACAATGAGAATAAATGTTAGAAAATAATGGTATGGAGCTGAAAACAGGACCTCATATCATAGATCAGTTAAGACAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAACTCAAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATCTGGTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTACAAAACAACACCCAAATACTCACATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAGGAGCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACATGATATGCACCGTGCATAGCAAAATANGGGGAAATTGCAGGGGGCAAAGGAGGGGATCTGAAAAGAGATGAAAGANAAATTCCTGGACAACAAATATTAGCCAGTCCATCTAGCAGCATCATGGTATGTAATTCGNCTTCCCTGCATGAGAATNAAT]




>consensus_311#0
AGTTGAAGACTGAGAAGTTGTCACTGAATATCGAGTCATAGCTCTTCTCTTTAATCTGTC
AATATAGCACACCCAAAATACAGCAGGACCAATTGTTTCTTTTACTACACCACAGCACAA
ACTTACATGAAGAGGCAAAAATTAATCTACATGGTAGGTGTACACAGTGTATAAAGTGGC
ATACTTGTGATGCGTCGTGCACAACAAAATAGAGAGGAATAGAGGAGCAAAAACCTTGCA
AGGAATCCAATACAATTTCTTGCACAACATTTAGCATCATCATGTTCTGTAATCCATCTT
CTCTACAATGAGAATAAATGTTAGAAAATAATGGTATGGAGCTGAAAACAGGACCTCATA
TCATAGATCAGTTAAGACAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAACTC
AAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATCTG
GTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTACAAAACAACACCCAAATACTCA
CATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAGGA
GCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACATGATATGCACCGTGC
ATAGCAAAATANGGGGAAATTGCAGGGGGCAAAGGAGGGGATCTGAAAAGAGATGAAAGA
NAAATTCCTGGACAACAAATATTAGCCAGTCCATCTAGCAGCATCATGGTATGTAATTCG
NCTTCCCTGCATGAGAATNAAT

consensusID : consensus_311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [TTGAGCGTCGCGACAGGGTGATAAAGGCGCACCCCTCGGGGTGGGTGGGCCACGCGGAAATAAAGAGCAAGAGAGGAGCAAAAAGCCGCCAAGCAAAGCAATACAATTGCTTGCCGACCATGAGGATGCATCATCTTCCGTAATCCATGTTCTCGCCAATGACGATCAATGTTAGAAAATAATGGTATGGAGCTGAAACCAGGGCCTCATATCATAGATCAGTTAAGGCAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAACTCAAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATCTGGTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTGCAAAACAACACCCAAATACTCACATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAGGAGCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACCTGATATGCCCCGTGCATAGCAAAATAGGGGGAATTGCAGGGGGCAAAGGAGGGAATCTGAAAAGAGATGAAAGATAAATTCCTGGGCAACAAATATTAGCCAGTCAATCTAGCAGCATCATGTTATGTAATTCGTCTTCCCTGCAATGAGAATAAATCTTCAAAAAAAAAAAAA]

[-] EMBL CA760463             [TTGAGCGTCGCGACAGGGTGATAAAGGCGCACCCCTCGGGGTGGGTGGGCCACGCGGAAATAAAGAGCAAGAGAGGAGCAAAAAGCCGCCAAGCAAAGCAATACAATTGCTTGCCGACCATGAGGATGCATCATCTTCCGTAATCCATGTTCTCGCCAATGACGATCAATGTTAGAAAATAATGGTATGGAGCTGAAACCAGGGCCTCATATCATAGATCAGTTAAGGCAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAACTCAAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATCTGGTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTGCAAAACAACACCCAAATACTCACATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAGGAGCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACCTGATATGCCCCGTGCATAGCAAAATAGGGGGAATTGCAGGGGGCAAAGGAGGGAATCTGAAAAGAGATGAAAGATAAATTCCTGGGCAACAAATATTAGCCAGTCAATCTAGCAGCATCATGTTATGTAATTCGTCTTCCCTGCAATGAGAATAAATCTTCAAAAAAAAAAAAA]




>consensus_311#1
TTGAGCGTCGCGACAGGGTGATAAAGGCGCACCCCTCGGGGTGGGTGGGCCACGCGGAAA
TAAAGAGCAAGAGAGGAGCAAAAAGCCGCCAAGCAAAGCAATACAATTGCTTGCCGACCA
TGAGGATGCATCATCTTCCGTAATCCATGTTCTCGCCAATGACGATCAATGTTAGAAAAT
AATGGTATGGAGCTGAAACCAGGGCCTCATATCATAGATCAGTTAAGGCAACAAAAGGGT
AAAAAGCTTTGAGAAAAAAGATAAGAAACTCAAGGCAGGCCATGACAAACCATGTATTAC
GAATATGCAATCCTCTACATAAGATAATCTGGTTGGTAGGCATTCAGTTTCCCCCCATAA
CTGAAGCTGCAAAACAACACCCAAATACTCACATTCAGTCAAGGTTAATTAACTAATATG
GTAATAAAGTAGCAAAAGTAAAACAATAGGAGCAATAATGAACAAAGAAGCTGCGCAGCA
ACAATAGTTTGTCACCTGATATGCCCCGTGCATAGCAAAATAGGGGGAATTGCAGGGGGC
AAAGGAGGGAATCTGAAAAGAGATGAAAGATAAATTCCTGGGCAACAAATATTAGCCAGT
CAATCTAGCAGCATCATGTTATGTAATTCGTCTTCCCTGCAATGAGAATAAATCTTCAAA
AAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_311#0      AGTTGAAGACTGAGAAGTTGTCACTGAATATCGAGTCATAGCTCTTCTCTTTAATCTGTC 60
consensus_311#1      ------------------------------------------------------------
                                                                                 

consensus_311#0      AATATAGCACACCCAAAATACAGCAGGACCAATTGTTTCTTTTACTACACCACAGCACAA 120
consensus_311#1      ------------------------------------------------------------
                                                                                 

consensus_311#0      ACTTACATGAAGAGGCAAAAATTAATCTACATGGTAGGTGTACACAGTGT-ATAAAGTGG 179
consensus_311#1      -------------------------------TTGAGCGTCGCGACAGGGTGATAAAGGCG 29
                                                    * *   **    **** ** ******  *

consensus_311#0      CATACTT-GTGATGCGTCGTGCACAACAAAATAGAGAGGAATAGAGGAGCAAAAACCTTG 238
consensus_311#1      CACCCCTCGGGGTGGGTGGGCCACGCGGAAATAAAGAGCAAGAGAGGAGCAAAAAGCCGC 89
                     **  * * * * ** ** *  ***    ***** **** ** ************* *   

consensus_311#0      CAAGGAATCCAATACAATTTCTTGCACAACATTTAGCATCATCATGTTCTGTAATCCATC 298
consensus_311#1      CAAGCAAAGCAATACAATTGCTTGCCGACCATGAGGATGCATCATCTTCCGTAATCCATG 149
                     **** **  ********** *****  * ***   *   ****** *** ********* 

consensus_311#0      TTCTCTACAATGAGAATAAATGTTAGAAAATAATGGTATGGAGCTGAAAACAGGACCTCA 358
consensus_311#1      TTCTCGCCAATGACGATCAATGTTAGAAAATAATGGTATGGAGCTGAAACCAGGGCCTCA 209
                     *****  ******  ** ******************************* **** *****

consensus_311#0      TATCATAGATCAGTTAAGACAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAAC 418
consensus_311#1      TATCATAGATCAGTTAAGGCAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAAC 269
                     ****************** *****************************************

consensus_311#0      TCAAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATC 478
consensus_311#1      TCAAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATC 329
                     ************************************************************

consensus_311#0      TGGTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTACAAAACAACACCCAAATACT 538
consensus_311#1      TGGTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTGCAAAACAACACCCAAATACT 389
                     *************************************** ********************

consensus_311#0      CACATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAG 598
consensus_311#1      CACATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAG 449
                     ************************************************************

consensus_311#0      GAGCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACATGATATGCACCGT 658
consensus_311#1      GAGCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACCTGATATGCCCCGT 509
                     ********************************************** ******** ****

consensus_311#0      GCATAGCAAAATANGGGGAAATTGCAGGGGGCAAAGGAGGGGATCTGAAAAGAGATGAAA 718
consensus_311#1      GCATAGCAAAATAGGGGGAA-TTGCAGGGGGCAAAGGAGGGAATCTGAAAAGAGATGAAA 568
                     ************* ****** ******************** ******************

consensus_311#0      GANAAATTCCTGGACAACAAATATTAGCCAGTCCATCTAGCAGCATCATGGTATGTAATT 778
consensus_311#1      GATAAATTCCTGGGCAACAAATATTAGCCAGTCAATCTAGCAGCATCATGTTATGTAATT 628
                     ** ********** ******************* **************** *********

consensus_311#0      CGNCTTCCCTGCA-TGAGAATNAAT----------------- 802
consensus_311#1      CGTCTTCCCTGCAATGAGAATAAATCTTCAAAAAAAAAAAAA 670
                     ** ********** ******* ***