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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1020 fasta sequence
[TCAGGCATCACAATTCACAAACTAACTCGTAGCGATCGATCTCTATTTTGTTGGAGTTTTTGCTGCTTCCACTCAAATTGTTCAGAGACGTTTCGATCGATCAAGATCAACTTGATCGGGATCGCGGCAGCTCGATCAGCTAACTAGAGAACGTCTTGGACTCTTGGATTTCTCCGCGCTCTCGCAGTATTCTAGGAGACATTTCTTGATCGATATCACTAGCTATATATCGGTCGTTTGATCATGTCGTCCACCGGGCTTTCCCGCGGCCGCCGGTGCACCATCGCGTCGCGGCTAAACGCGTCGGCTGAGGCGGCGGTTGCGGCCACCAGCAGCAGCAGGGGGGAGAAGCAGAAGGCGGCGGTGGCGAGACGGGTGGAGTACTACGACGAGGAGGATGCGCGGGGGGAGGCGCGCTACGACGTTTTCATCAACCACAGGGGCGTGGACACCAAGAGGACGGTGGCGCGGCTTTTCTACGACCGCCTCGTCGCCGCGGGCGTCCGCGCCTTCCTGGACAACCAGTCAATGCGCCCCGGCGATCGCCTCGACGAGCGGATCAGCGAGGCCATCAGCCAGTGCGGCGTCGCGGTGGCCATCTTCTCGCCGCACTACTGCGACTCCGAGTATTGCCTCCGCGAGCTCGCCCTCCTCGTCGAGTCACGGAAAAAGATCATCCCGGTGTTTTACAACATCAAACCCTCGGATCTCGTCCTCCCGCAGGCCGTCGTCGAGTCCGTCGCTCACCATCCCCGCGACATTGAACGCTTCAAATTCGCGCTACGCGAGGTCAAGAACACAGTCGGCCTCACCTACGACACAGCCACAGGGTAGGTTTAAAATGCTGCAGCCATTTGGCGCCATTATATTCTCATACTTAGTAGCTAAGCTCGGTTAGCTTCTCGTTTGATCGCAACTGACGCATTTGTAATGGTGATCTGCCTCTACAGAGATCTTGCAGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACAAGCATGAGGTCACG]
[+] EMBL AK108970 [TCAGGCATCACAATTCACAAACTAACTCGTAGCGATCGATCTCTATTTTGTTGGAGTTTTTGCTGCTTCCACTCAAATTGTTCAGAGACGTTTCGATCGATCAAGATCAACTTGATCGGGATCGCGGCAGCTCGATCAGCTAACTAGAGAACGTCTTGGACTCTTGGATTTCTCCGCGCTCTCGCAGTATTCTAGGAGACATTTCTTGATCGATATCACTAGCTATATATCGGTCGTTTGATCATGTCGTCCACCGGGCTTTCCCGCGGCCGCCGGTGCACCATCGCGTCGCGGCTAAACGCGTCGGCTGAGGCGGCGGTTGCGGCCACCAGCAGCAGCAGGGGGGAGAAGCAGAAGGCGGCGGTGGCGAGACGGGTGGAGTACTACGACGAGGAGGATGCGCGGGGGGAGGCGCGCTACGACGTTTTCATCAACCACAGGGGCGTGGACACCAAGAGGACGGTGGCGCGGCTTTTCTACGACCGCCTCGTCGCCGCGGGCGTCCGCGCCTTCCTGGACAACCAGTCAATGCGCCCCGGCGATCGCCTCGACGAGCGGATCAGCGAGGCCATCAGCCAGTGCGGCGTCGCGGTGGCCATCTTCTCGCCGCACTACTGCGACTCCGAGTATTGCCTCCGCGAGCTCGCCCTCCTCGTCGAGTCACGGAAAAAGATCATCCCGGTGTTTTACAACATCAAACCCTCGGATCTCGTCCTCCCGCAGGCCGTCGTCGAGTCCGTCGCTCACCATCCCCGCGACATTGAACGCTTCAAATTCGCGCTACGCGAGGTCAAGAACACAGTCGGCCTCACCTACGACACAGCCACAGGGTAGGTTTAAAATGCTGCAGCCATTTGGCGCCATTATATTCTCATACTTAGTAGCTAAGCTCGGTTAGCTTCTCGTTTGATCGCAACTGACGCATTTGTAATGGTGATCTGCCTCTACAGAGATCTTGCAGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACAAGCATGAGGTCACG]
consensusID : consensus_3110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence
[TCCGGGNNTTGNCTCCGCGAGCTCGCCCTCCTCGTCGAGTCACGGNAAAAGATCATCCCGGNGTTTTACAACATCAAACCCTCGGNTCTCGTCCTCCCGCAGGCCGTCGTCGAGTCCGTCGCTCACCATCCCCGNGACATTGAACGCTTCAAATTCGCGCTANGCGAGGTCAAGAACACAGTCGGCCTCACCTACGACCCAGCCACAGGAGATCTTGCNGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACAAGCATGAGGTCACGCAAGGAAGACATATGATCATGTCCAGGCTGTAATTTGAATGGTTCATCGCGGCTTCACCATGNACAGNTCAGAGGACGAGACTAAGAAAAACCGGGGGCAATTTAACAAATAACATTTAACTTGGGATGGATTCATTCATTTTTTTTCTAGGTAGGTATTTTTTGGGTAAATAAATTAATCTGCAGGATTGAATTGGAACTATACGTAAAAATAAGCAATGCATGCAGCACTGAGTGACTAGCTAGCTAGGCAGTCCATGCCGACATGNGCATGAGAATAGGGGGTTTGCAAATAATTTATGGGCATATGGGNATATGGATTTACCCTGATTACNCCAATAAATTAAAAATACAGGGCNTTTTTTAACAGGGCTGCCNCTCTTTTGCATGGGNGGACTGGNTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGNGGGNCNCCCCCGGGGGGGGNGCTCCACCTTTTTGGTNCCCTTTAAGGNNGGGTNAATTGNCCCCTTGGGGGAANCNTGGGCATAGCTGGTTNCCTNGGGGGAANTGGGTTTCC]
[+] EMBL CA765462 [TCCGGGNNTTGNCTCCGCGAGCTCGCCCTCCTCGTCGAGTCACGGNAAAAGATCATCCCGGNGTTTTACAACATCAAACCCTCGGNTCTCGTCCTCCCGCAGGCCGTCGTCGAGTCCGTCGCTCACCATCCCCGNGACATTGAACGCTTCAAATTCGCGCTANGCGAGGTCAAGAACACAGTCGGCCTCACCTACGACCCAGCCACAGGAGATCTTGCNGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACAAGCATGAGGTCACGCAAGGAAGACATATGATCATGTCCAGGCTGTAATTTGAATGGTTCATCGCGGCTTCACCATGNACAGNTCAGAGGACGAGACTAAGAAAAACCGGGGGCAATTTAACAAATAACATTTAACTTGGGATGGATTCATTCATTTTTTTTCTAGGTAGGTATTTTTTGGGTAAATAAATTAATCTGCAGGATTGAATTGGAACTATACGTAAAAATAAGCAATGCATGCAGCACTGAGTGACTAGCTAGCTAGGCAGTCCATGCCGACATGNGCATGAGAATAGGGGGTTTGCAAATAATTTATGGGCATATGGGNATATGGATTTACCCTGATTACNCCAATAAATTAAAAATACAGGGCNTTTTTTAACAGGGCTGCCNCTCTTTTGCATGGGNGGACTGGNTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGNGGGNCNCCCCCGGGGGGGGNGCTCCACCTTTTTGGTNCCCTTTAAGGNNGGGTNAATTGNCCCCTTGGGGGAANCNTGGGCATAGCTGGTTNCCTNGGGGGAANTGGGTTTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3110#0 TCAGGCATCACAATTCACAAACTAACTCGTAGCGATCGATCTCTATTTTGTTGGAGTTTT 60
consensus_3110#1 ------------------------------------------------------------
consensus_3110#0 TGCTGCTTCCACTCAAATTGTTCAGAGACGTTTCGATCGATCAAGATCAACTTGATCG-- 118
consensus_3110#1 --------------------TCCGG----GNNTTGNCTCCGCGAGCTCGCCCTCCTCGTC 36
* * * * * * * ** ** * * ***
consensus_3110#0 GGATCGCGGCAGCTCGATCAGCTAACTAGAGAACGTC-TTGGACTCTTGGATTTCTCCGC 177
consensus_3110#1 GAGTCACGGNAAAA-GATCATCCCGGNGTTTTACAACATCAAACCCTCGGNTCTCGTC-- 93
* ** *** * ***** * ** * * ** ** ** * ** *
consensus_3110#0 GCTCTCGCAGTATTCTAGGAGACATTTCTTGATCGATATCACTAGCTATATATCGGTCGT 237
consensus_3110#1 -CTCCCGCAG-GCCGTCGTCGA-GTCCGTCGCTCACCATCCCCGNG---ACATTGAACGC 147
*** ***** * * ** * * * ** *** * * ** * **
consensus_3110#0 TTGATCATGTCGTCCACCGGGCTTTCCCGCGGCCGCCGGTGCACCATCGCGTCGCGGCTA 297
consensus_3110#1 TTCAAATTCGCGCTANGCGAGGTCAAGAACA-CAGTCGGC-CTCACCTACGACCCAGCCA 205
** * * ** ** * * * * * *** * * ** * * ** *
consensus_3110#0 AACGCG--TCGGCTGAGGCGGCGGTTGCGGCCACCAGCAGCAGCAGGGGGGAGAAGCAGA 355
consensus_3110#1 CAGGAGATCTTGCNGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACA 265
* * * ** *** * **** * * * ** * * * * *
consensus_3110#0 AGGCGGCGGTGGCGAGACGGGTGGAGTACTACGACGAGGAGGATGCGCGGGGGGAGGCGC 415
consensus_3110#1 AGCATGAGGTCACGCAA-GGAAGACATATGATCATGTCCAGGCTGTAATTTGAATGGTTC 324
** * *** ** * ** * ** * * * *** ** * ** *
consensus_3110#0 GCTACGACGTTTTCATCAACCACAGGGGCGTGGACACCAAGAGGACGGTGGCGCGGCTTT 475
consensus_3110#1 ATCGCGGCTTCACCATGNACAGNTCAGAGGACGAGACTAAGAAAAACCGGGGGCAATTTA 384
** * * *** ** * * ** ** **** * ** ** **
consensus_3110#0 TCTACGACCGCCTCGTCGCCGCGGGCGTCCGCGCCTTCCTGGACAACCAGTCAATGCGCC 535
consensus_3110#1 ACAAATAACATTTAACT-TGGGATGGATTCATTCATTTTTTTTCTA--GGTAGGTATTTT 441
* * * * * * * * * * ** * * * ** *
consensus_3110#0 CCGGCGATCGCCTCGACGAGCGGATCAGCGAGGCCATCAGCCAGTGCGGCGTCGCGGTGG 595
consensus_3110#1 TTGGGTA-------AATAAATTAATCTGCAGGATTG--AATTGGAACTATA-CGTAAAAA 491
** * * * *** ** * * * * **
consensus_3110#0 CCATCTTCTCGCCGCACTACTGCGACTCCGAGTATTGCCTCCGCGAGCTCGCCCTCCTCG 655
consensus_3110#1 TAAGC-----AATGCA----TGCAGCACTGAGTGACTAGCTAGCTAG---GCAGTCCATG 539
* * *** *** * * **** ** ** ** *** *
consensus_3110#0 TCGAGTCACGGAAAAAGATCATCCCGGTGTTTTACAACATCAAACCCTCGGATCTCGTCC 715
consensus_3110#1 CCGACATGNGCATGAGAATA-----GGGGGTTTGCAA----ATAATTTATGGGCATATGG 590
*** * * * ** ** * *** *** * * * * * *
consensus_3110#0 TCCCGCAGGCCGTCGTCGAGTCCGTCGCTCACCATCCCCGCGACATTGAACGCTTCAAAT 775
consensus_3110#1 GNATATGGATTTACCCTGATTACNCC----AATAAATTAAAAATACAGGGCNTTTTTTAA 646
* * ** * * * * * * * * * ** *
consensus_3110#0 TCGCGCTACGCGAGGTCAAGAACACAGTCGGCCTCACCTACGACACAGCCACAGGGTAGG 835
consensus_3110#1 CAGGGCTGCC---NCTCTTTTGCATGGGNGGACTGGNTTTCAAAAAAAAAAAAAAAAAAA 703
* *** * ** ** * ** ** * * * * * * * *
consensus_3110#0 TTTAAAATGCTGCAGCCATTTGGCGCCATTATATTCTCATACTTAGTAGCT----AAGCT 891
consensus_3110#1 AAAAAAAAAGNGGGNCNCCCCCGGGGGGGGNGCTCCACCTTTTTGGTNCCCTTTAAGGNN 763
**** * * * * * * * * ** ** * * *
consensus_3110#0 CGGTTAGCTTCTCGTTTGATCGCAACTGACGCATTTGTAATGGTGATCTGCCTCTACAGA 951
consensus_3110#1 GGGTNAATTGNCCCCTTGGGGGAANCNTGGGCAT---AGCTGGTTNCCTNGGGGGAANTG 820
*** * * * *** * * * **** **** ** *
consensus_3110#0 GATCTTGCAGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACAAGCAT 1011
consensus_3110#1 GGTTTCC----------------------------------------------------- 827
* * *
consensus_3110#0 GAGGTCACG 1020
consensus_3110#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||