These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [TGATGTCGAGGATNCACCCTGGCGAGGANCCGGTCGTCGTCGTCGTCGGCGGCGACGGCGGCGNCGGCGGCGGCGGACGTGCCGAGGGGGCATTTCGCGGTGTACGTCGGCGNGAGGCGGAAGCGGTTCGTGATCCCGACGGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTGGAGGAGGAATTCGGCTTCGACTGCCACCGCTGCGGTGGCCTCACCATCCCCTGCGCCACCGAGGGCGACTTCGCCTCCTTCGTCGCCGAAGCCATCGCCTCCGACGACCACCACCACCACTAGCTCGCTGTTAATTAGTTAATTAGTAGCTTCTAGTTAATTAGCTAGCTATGACGGCTCGGATTTTTGTGTTCTCTTTTCTTGTTGCTGAGGATTAATTGGAATCCTTCTTGCTGATGAGATCGTTCGTTGTACTACTTGTATGATAACATCATTTGATGGAAAGTTGTTGCCAAAAAAAA] [+] EMBL AU083558 [TGATGTCGAGGATNCACCCTGGCGAGGANCCGGTCGTCGTCGTCGTCGGCGGCGACGGCGGCGNCGGCGGCGGCGGACGTGCCGAGGGGGCATTTCGCGGTGTACGTCGGCGNGAGGCGGAAGCGGTTCGTGATCCCGACGGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTGGAGGAGGAATTCGGCTTCGACTGCCACCGCTGCGGTGGCCTCACCATCCCCTGCGCCACCGAGGGCGACTTCGCCTCCTTCGTCGCCGAAGCCATCGCCTCCGACGACCACCACCACCACTAGCTCGCTGTTAATTAGTTAATTAGTAGCTTCTAGTTAATTAGCTAGCTATGACGGCTCGGATTTTTGTGTTCTCTTTTCTTGTTGCTGAGGATTAATTGGAATCCTTCTTGCTGATGAGATCGTTCGTTGTACTACTTGTATGATAACATCATTTGATGGAAAGTTGTTGCCAAAAAAAA] consensusID : consensus_3119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [ACAAACACATACAGCAGCATCACCAGCTCAGTTAATTGCAAGCAAGAATAAACAAGCTCGATCGATCACTGTGATAATATGGCGGGGAAGCTGTACCAGCTGATGTCGAGGATGCACCTGGCGAGGAGCCGGTNGTCGTCGTCGTCGGCGGCGACGGCGGCGGCGGCGGCGGCGGACGTNCCGAGGGGGCATTTCGCGGTGTACGTCGGCGAGAGGCGGAAGCGGTTCGTGATCCCGACGGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTNGAGGAGGAATTCGGCTTTCGACTGCCACCGCTGCGGTGNCCTTCANCATCCCCTGCGGCAACGAGGGGCGAATTTGGCTTCTTTCGTCGCCGAAGCCATTGNCTTCCAAGGGCC] [+] EMBL OSS14558A [ACAAACACATACAGCAGCATCACCAGCTCAGTTAATTGCAAGCAAGAATAAACAAGCTCGATCGATCACTGTGATAATATGGCGGGGAAGCTGTACCAGCTGATGTCGAGGATGCACCTGGCGAGGAGCCGGTNGTCGTCGTCGTCGGCGGCGACGGCGGCGGCGGCGGCGGCGGACGTNCCGAGGGGGCATTTCGCGGTGTACGTCGGCGAGAGGCGGAAGCGGTTCGTGATCCCGACGGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTNGAGGAGGAATTCGGCTTTCGACTGCCACCGCTGCGGTGNCCTTCANCATCCCCTGCGGCAACGAGGGGCGAATTTGGCTTCTTTCGTCGCCGAAGCCATTGNCTTCCAAGGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3119#0 ------------------------------------------------------------ consensus_3119#1 ACAAACACATACAGCAGCATCACCAGCTCAGTTAATTGCAAGCAAGAATAAACAAGCTCG 60 consensus_3119#0 ----------------------------------------TGATGTCGAGGATNCACCCT 20 consensus_3119#1 ATCGATCACTGTGATAATATGGCGGGGAAGCTGTACCAGCTGATGTCGAGGATGCACC-T 119 ************* **** * consensus_3119#0 GGCGAGGANCCGGTCGTCGTCGTCGTCGGCGGCGACGGCGGCGNCGGCGGCGGCGGACGT 80 consensus_3119#1 GGCGAGGAGCCGGTNGTCGTCGTCGTCGGCGGCGACGGCGGCGGCGGCGGCGGCGGACGT 179 ******** ***** **************************** **************** consensus_3119#0 GCCGAGGGGGCATTTCGCGGTGTACGTCGGCGNGAGGCGGAAGCGGTTCGTGATCCCGAC 140 consensus_3119#1 NCCGAGGGGGCATTTCGCGGTGTACGTCGGCGAGAGGCGGAAGCGGTTCGTGATCCCGAC 239 ******************************* *************************** consensus_3119#0 GGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTGGAGGAGGAATTCGG 200 consensus_3119#1 GGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTNGAGGAGGAATTCGG 299 ********************************************* ************** consensus_3119#0 CTT-CGACTGCCACCGCTGCGGTGGCCT-CACCATCCCCTGCGCCACCGAGGGC--GACT 256 consensus_3119#1 CTTTCGACTGCCACCGCTGCGGTGNCCTTCANCATCCCCTGCGGCAACGAGGGGCGAATT 359 *** ******************** *** ** *********** ** ****** * * consensus_3119#0 TCGCCTCCTTCGTCGCCGAAGCCATCGCCT-CCGACGACCACCACCACCACTAGCTCGCT 315 consensus_3119#1 TGGCTTCTTTCGTCGCCGAAGCCATTGNCTTCCAAGGGCC-------------------- 399 * ** ** ***************** * ** ** * * ** consensus_3119#0 GTTAATTAGTTAATTAGTAGCTTCTAGTTAATTAGCTAGCTATGACGGCTCGGATTTTTG 375 consensus_3119#1 ------------------------------------------------------------ consensus_3119#0 TGTTCTCTTTTCTTGTTGCTGAGGATTAATTGGAATCCTTCTTGCTGATGAGATCGTTCG 435 consensus_3119#1 ------------------------------------------------------------ consensus_3119#0 TTGTACTACTTGTATGATAACATCATTTGATGGAAAGTTGTTGCCAAAAAAAA 488 consensus_3119#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||