cluster # 3128

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Oryza sativa
cluster # 3128 cluster # 3128 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3128#0 length = 1259 sequences # 1

consensus_3128#1 length = 553 sequences # 1

consensusID : consensus_3128#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1259
fasta sequence

                              [CCCCGCCTTTACGCGAGAATAACCCTCCCGAAACCCTCCTTCCCCGATCGATGCCGCCGCCGCCGCCTCCTCCGCCGGAGTGGGCCGACCTCCCGGTGGACGCGGTCCTGGCGGTGTTCGAGCGGCTGGGCGCGGCGGAAGTGCTGATGGGCGCCGGGGTGGTGTGCCGCAGCTGGCTCCGCGCGGCCACCCGCGAGCCGCGGCTCTGGCGCCGGGTGGACCTCACCGCCTGCTTCGACCCCACCGTCGACATGGAGGCCATGGCGCGCGCGGCCGTCGACCGCGCCGGCGGACGCCTCGAGCACTTCGCCGCCGAGCGCTTCGTCACCGATGAGCTCCTCCTCTACGTCGCCAAGAGAACTAGCTGCTTGAAAAGTCTTCGGCTACGTGATTGCATAAAAATCTCAGAGAAAGGCTTGGTTGCTGTTGGCAAGACATCTCCCTGTCTTGAGGAACTTGAGCTCACTACCTGCACCATCAGTATTTTGCTGAAGGCTGTTGGCGAAGCATTTCCGAACCTGAAGTGTCTGCGACTGAACCATCGTTGGTTTGATGTTCAGTTTGATGAGTTCAGAGATAACTTCCATGCCCTTGGAATAGCCTGCAGCATGCACAGGCTACGCCATCTTCAGATCTTTGCCAATCGGCTCCGCAACAATGCACTTGCTGCCATCCTTGACAACTGCCCGCACCTTGAGTCCCTTGACTTGCGTCAGTGCTTCAACGTCGATGTGGATGCAGAAGTGAGAGCAAAGTGTGCAAGGCTGAAGGATGTGAGGTTCCCAAACGACTCAACCAAGGACTATGAGTATGAGACTTTTATTGAGACACCATCACTAGATTCGCTCCCACTTCCATTTCCCGCAGCAGTTCCTCAATGGCCCTTCCATGGGAATGACGAGGATGACGACAATGATGGTGATCAGGACGATGACGATGATGGTGATCAGGACGATGATGACTTGGGCGGTCACAGGGTGACAGAGTATGGTTTTATCATCGGTGACTACCATGTCCGCGGTCGGATCATCCACCATGAGTAACTCGACATCTACATGCCGTAATTAGCAGGTTTTGATGTCCCAGCGTCTGAGTCTCAGGAAATGGAAGGTAGGTGTTCAGAAGTAAGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGGCGCATTTAGAACGGTTCTGTATCCAACTGCAAGTCTGCAACCGGTCTAGTGACCTCATGTGTAGTGGTAAAA]

[+] EMBL AK102355             [CCCCGCCTTTACGCGAGAATAACCCTCCCGAAACCCTCCTTCCCCGATCGATGCCGCCGCCGCCGCCTCCTCCGCCGGAGTGGGCCGACCTCCCGGTGGACGCGGTCCTGGCGGTGTTCGAGCGGCTGGGCGCGGCGGAAGTGCTGATGGGCGCCGGGGTGGTGTGCCGCAGCTGGCTCCGCGCGGCCACCCGCGAGCCGCGGCTCTGGCGCCGGGTGGACCTCACCGCCTGCTTCGACCCCACCGTCGACATGGAGGCCATGGCGCGCGCGGCCGTCGACCGCGCCGGCGGACGCCTCGAGCACTTCGCCGCCGAGCGCTTCGTCACCGATGAGCTCCTCCTCTACGTCGCCAAGAGAACTAGCTGCTTGAAAAGTCTTCGGCTACGTGATTGCATAAAAATCTCAGAGAAAGGCTTGGTTGCTGTTGGCAAGACATCTCCCTGTCTTGAGGAACTTGAGCTCACTACCTGCACCATCAGTATTTTGCTGAAGGCTGTTGGCGAAGCATTTCCGAACCTGAAGTGTCTGCGACTGAACCATCGTTGGTTTGATGTTCAGTTTGATGAGTTCAGAGATAACTTCCATGCCCTTGGAATAGCCTGCAGCATGCACAGGCTACGCCATCTTCAGATCTTTGCCAATCGGCTCCGCAACAATGCACTTGCTGCCATCCTTGACAACTGCCCGCACCTTGAGTCCCTTGACTTGCGTCAGTGCTTCAACGTCGATGTGGATGCAGAAGTGAGAGCAAAGTGTGCAAGGCTGAAGGATGTGAGGTTCCCAAACGACTCAACCAAGGACTATGAGTATGAGACTTTTATTGAGACACCATCACTAGATTCGCTCCCACTTCCATTTCCCGCAGCAGTTCCTCAATGGCCCTTCCATGGGAATGACGAGGATGACGACAATGATGGTGATCAGGACGATGACGATGATGGTGATCAGGACGATGATGACTTGGGCGGTCACAGGGTGACAGAGTATGGTTTTATCATCGGTGACTACCATGTCCGCGGTCGGATCATCCACCATGAGTAACTCGACATCTACATGCCGTAATTAGCAGGTTTTGATGTCCCAGCGTCTGAGTCTCAGGAAATGGAAGGTAGGTGTTCAGAAGTAAGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGGCGCATTTAGAACGGTTCTGTATCCAACTGCAAGTCTGCAACCGGTCTAGTGACCTCATGTGTAGTGGTAAAA]




>consensus_3128#0
CCCCGCCTTTACGCGAGAATAACCCTCCCGAAACCCTCCTTCCCCGATCGATGCCGCCGC
CGCCGCCTCCTCCGCCGGAGTGGGCCGACCTCCCGGTGGACGCGGTCCTGGCGGTGTTCG
AGCGGCTGGGCGCGGCGGAAGTGCTGATGGGCGCCGGGGTGGTGTGCCGCAGCTGGCTCC
GCGCGGCCACCCGCGAGCCGCGGCTCTGGCGCCGGGTGGACCTCACCGCCTGCTTCGACC
CCACCGTCGACATGGAGGCCATGGCGCGCGCGGCCGTCGACCGCGCCGGCGGACGCCTCG
AGCACTTCGCCGCCGAGCGCTTCGTCACCGATGAGCTCCTCCTCTACGTCGCCAAGAGAA
CTAGCTGCTTGAAAAGTCTTCGGCTACGTGATTGCATAAAAATCTCAGAGAAAGGCTTGG
TTGCTGTTGGCAAGACATCTCCCTGTCTTGAGGAACTTGAGCTCACTACCTGCACCATCA
GTATTTTGCTGAAGGCTGTTGGCGAAGCATTTCCGAACCTGAAGTGTCTGCGACTGAACC
ATCGTTGGTTTGATGTTCAGTTTGATGAGTTCAGAGATAACTTCCATGCCCTTGGAATAG
CCTGCAGCATGCACAGGCTACGCCATCTTCAGATCTTTGCCAATCGGCTCCGCAACAATG
CACTTGCTGCCATCCTTGACAACTGCCCGCACCTTGAGTCCCTTGACTTGCGTCAGTGCT
TCAACGTCGATGTGGATGCAGAAGTGAGAGCAAAGTGTGCAAGGCTGAAGGATGTGAGGT
TCCCAAACGACTCAACCAAGGACTATGAGTATGAGACTTTTATTGAGACACCATCACTAG
ATTCGCTCCCACTTCCATTTCCCGCAGCAGTTCCTCAATGGCCCTTCCATGGGAATGACG
AGGATGACGACAATGATGGTGATCAGGACGATGACGATGATGGTGATCAGGACGATGATG
ACTTGGGCGGTCACAGGGTGACAGAGTATGGTTTTATCATCGGTGACTACCATGTCCGCG
GTCGGATCATCCACCATGAGTAACTCGACATCTACATGCCGTAATTAGCAGGTTTTGATG
TCCCAGCGTCTGAGTCTCAGGAAATGGAAGGTAGGTGTTCAGAAGTAAGGTAATTCGCTG
AGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGGCGCATTTAGAACG
GTTCTGTATCCAACTGCAAGTCTGCAACCGGTCTAGTGACCTCATGTGTAGTGGTAAAA

consensusID : consensus_3128#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [AATNTCAAGGNAAGGAAGGGTTTCCAANAAATTCANCAGGGATNGGTTGGGAATTTNTGGGAAACCCCTNAAGGGTTGTTTCNAAATTCCATTTCCGCNGCAGTTTCTTAAAGGNCCNTTCCAGGGGGGAAGNNGGGGGGGGGAACATGGTGGGAATTCNGGNCGGAGGCGGNGNTGGTAAATCAGGGACGATGATNAATNGGGCGTTCAACAGGGGGACAGGAGTAGGGTTTTNTTCATTCGGGGANTAACNATTTCCGCGGTCGGGATCATCCACCATGGAGTAAATTCGAAATTNAACATGCCGTAATTAGCAGGTTTTGATGTCCCAGCGTCTGAGTNTCAGGAAATGGAAGGTAGGTGTTCAGAAGTAAGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGGCGCATTTAGAACGGTTNTGTATCCAACTGCAAGTNTGCAACCGGTCTAGTGACCTCATGTGTAGTGGTAAAACCTTTGTTCCTATTCTGCGTGTTGCCATAGCGCTTGTGGAAGTTTCTT]

[-] EMBL BE229146             [AATNTCAAGGNAAGGAAGGGTTTCCAANAAATTCANCAGGGATNGGTTGGGAATTTNTGGGAAACCCCTNAAGGGTTGTTTCNAAATTCCATTTCCGCNGCAGTTTCTTAAAGGNCCNTTCCAGGGGGGAAGNNGGGGGGGGGAACATGGTGGGAATTCNGGNCGGAGGCGGNGNTGGTAAATCAGGGACGATGATNAATNGGGCGTTCAACAGGGGGACAGGAGTAGGGTTTTNTTCATTCGGGGANTAACNATTTCCGCGGTCGGGATCATCCACCATGGAGTAAATTCGAAATTNAACATGCCGTAATTAGCAGGTTTTGATGTCCCAGCGTCTGAGTNTCAGGAAATGGAAGGTAGGTGTTCAGAAGTAAGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGGCGCATTTAGAACGGTTNTGTATCCAACTGCAAGTNTGCAACCGGTCTAGTGACCTCATGTGTAGTGGTAAAACCTTTGTTCCTATTCTGCGTGTTGCCATAGCGCTTGTGGAAGTTTCTT]




>consensus_3128#1
AATNTCAAGGNAAGGAAGGGTTTCCAANAAATTCANCAGGGATNGGTTGGGAATTTNTGG
GAAACCCCTNAAGGGTTGTTTCNAAATTCCATTTCCGCNGCAGTTTCTTAAAGGNCCNTT
CCAGGGGGGAAGNNGGGGGGGGGAACATGGTGGGAATTCNGGNCGGAGGCGGNGNTGGTA
AATCAGGGACGATGATNAATNGGGCGTTCAACAGGGGGACAGGAGTAGGGTTTTNTTCAT
TCGGGGANTAACNATTTCCGCGGTCGGGATCATCCACCATGGAGTAAATTCGAAATTNAA
CATGCCGTAATTAGCAGGTTTTGATGTCCCAGCGTCTGAGTNTCAGGAAATGGAAGGTAG
GTGTTCAGAAGTAAGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTAC
TACAACAGAAGGGCGCATTTAGAACGGTTNTGTATCCAACTGCAAGTNTGCAACCGGTCT
AGTGACCTCATGTGTAGTGGTAAAACCTTTGTTCCTATTCTGCGTGTTGCCATAGCGCTT
GTGGAAGTTTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3128#0      CCCCGCCTTTACGCGAGAATAACCCTCCCGAAACCCTCCTTCCCCGATCGATGCCGCCGC 60
consensus_3128#1      ------------------------------------------------------------
                                                                                  

consensus_3128#0      CGCCGCCTCCTCCGCCGGAGTGGGCCGACCTCCCGGTGGACGCGGTCCTGGCGGTGTTCG 120
consensus_3128#1      ------------------------------------------------------------
                                                                                  

consensus_3128#0      AGCGGCTGGGCGCGGCGGAAGTGCTGATGGGCGCCGGGGTGGTGTGCCGCAGCTGGCTCC 180
consensus_3128#1      ------------------------------------------------------------
                                                                                  

consensus_3128#0      GCGCGGCCACCCGCGAGCCGCGGCTCTGGCGCCGGGTGGACCTCACCGCCTGCTTCGACC 240
consensus_3128#1      ------------------------------------------------------------
                                                                                  

consensus_3128#0      CCACCGTCGACATGGAGGCCATGGCGCGCGCGGCCGTCGACCGCGCCGGCGGACGCCTCG 300
consensus_3128#1      ------------------------------------------------------------
                                                                                  

consensus_3128#0      AGCACTTCGCCGCCGAGCGCTTCGTCACCGATGAGCTCCTCCTCTACGTCGCCAAGAGAA 360
consensus_3128#1      ------------------------------------------------------------
                                                                                  

consensus_3128#0      CTAGCTGCTTGAAAAGTCTTCGGCTACGTGATTGCATAAAAATCTCAGAGAAAGGCTTGG 420
consensus_3128#1      ------------------------------------------------------------
                                                                                  

consensus_3128#0      TTGCTGTTGGCAAGACATCTCCCTGTCTTGAGGAACTTGAGCTCACTACCTGCACCATCA 480
consensus_3128#1      ------------------------------------------------------------
                                                                                  

consensus_3128#0      GTATTTTGCTGAAGGCTGTTGGCGAAGCATTTCCGAACCTGAAGTGTCTGCGACTGAACC 540
consensus_3128#1      ------------------------------------------------------------
                                                                                  

consensus_3128#0      ATCGTTGGTTTGATGTTCAGTTTGATGAGTTCAGAGATAACTTCCATGCCCTTGGAATAG 600
consensus_3128#1      ------------------------------------------------------------
                                                                                  

consensus_3128#0      CCTGCAGCATGCACAGGCTACGCCATCTTCAGATCTTTGCCAATCGGCTCCGCAACAATG 660
consensus_3128#1      ------------------------------------------------------------
                                                                                  

consensus_3128#0      CACTTGCTGCCATCCTTGACAACTGCCCGCACCTTGAGTCCCTTGACTTGCGTCAGTGCT 720
consensus_3128#1      ------------------------------------------------------------
                                                                                  

consensus_3128#0      TCAACGTCGATGTGGATGCAGAAGTGAGAGCAAAGTGTGCAAGGCTGAAGGATGTGAGGT 780
consensus_3128#1      ----------------------------------------AATNTCAAGGNAAGGAAGGG 20
                                                              **     * * * *  *** 

consensus_3128#0      TCCCAAACGACTCAACCAAGGACTATGAGTATGAGACTTTTATTGAGACACCATCACTAG 840
consensus_3128#1      TTTCCAANAAATTCANCAGGGA---TNGGT-TGGGAATTT--NTGGGAAACCCCTNAAGG 74
                      *  * **  * *  * ** ***   *  ** ** ** ***   ** ** ***       *

consensus_3128#0      ATTCGCTCCCACTTCCATTTCCCGCAGCAGTTCCTCAATGGCCCTT-CCATGGGAATGAC 899
consensus_3128#1      GTTGTTTCNAAATTCCATTTCC-GCNGCAGTTTCTTAAAGGNCCNTTCCAGGGGGGAAGN 133
                       **   **  * ********** ** ****** ** ** ** ** * *** ***      

consensus_3128#0      GAGGATGACGACAATGATGGTGAT-CAGGACGATGACGATGATGGTGA-TCAGG-ACGAT 956
consensus_3128#1      NGGGGGGGGGAACATGGTGGGAATTCNGGNCGGAGGCGGNGNTGGTAAATCAGGGACGAT 193
                        **  *  **  *** ***  ** * ** **  * **  * **** * ***** *****

consensus_3128#0      GATGACTTGGGCGGTCA-CAGGGTGACAG-AGTATGGTTTTATCA--TCGGTGACTA-CC 1011
consensus_3128#1      GATNAATNGGGCGTTCAACAGGGGGACAGGAGTAGGGTTTTNTTCATTCGGGGANTAACN 253
                      *** * * ***** *** ***** ***** **** ****** *    **** ** ** * 

consensus_3128#0      ATGTCCGCGGTCGG-ATCATCCACCATG-AGTAA-CTCGACATCTA-CATGCCGTAATTA 1067
consensus_3128#1      ATTTCCGCGGTCGGGATCATCCACCATGGAGTAAATTCGAAATTNAACATGCCGTAATTA 313
                      ** *********** ************* *****  **** **  * *************

consensus_3128#0      GCAGGTTTTGATGTCCCAGCGTCTGAGTCTCAGGAAATGGAAGGTAGGTGTTCAGAAGTA 1127
consensus_3128#1      GCAGGTTTTGATGTCCCAGCGTCTGAGTNTCAGGAAATGGAAGGTAGGTGTTCAGAAGTA 373
                      **************************** *******************************

consensus_3128#0      AGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGG 1187
consensus_3128#1      AGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGG 433
                      ************************************************************

consensus_3128#0      CGCATTTAGAACGGTTCTGTATCCAACTGCAAGTCTGCAACCGGTCTAGTGACCTCATGT 1247
consensus_3128#1      CGCATTTAGAACGGTTNTGTATCCAACTGCAAGTNTGCAACCGGTCTAGTGACCTCATGT 493
                      **************** ***************** *************************

consensus_3128#0      GTAGTGGTAAAA------------------------------------------------ 1259
consensus_3128#1      GTAGTGGTAAAACCTTTGTTCCTATTCTGCGTGTTGCCATAGCGCTTGTGGAAGTTTCTT 553
                      ************